pycom16g04800

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012004
Physical Location & Seq
Forward (+)
3080341 .. 3083100
2760 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1008 bp
ATGAGAACCACCGCGAAAGGCAACCAGGAGGAGGACGAGTACGACGACGAGGAGTTTGGCTCCCGGAAAGAGGGCCCTTCTTCCAATTCCAACAGCAAAGATGCCAAGAACAATGATAAGGCTAGTGTTATACGATCGAAACATTCCGTCACGGAACAGAGGAGGAGGAGCAAGATCAATGAGAGATTCCAGATATTGAGAGATCTAATACCCCATAGTGATCAGAAAAGAGATACAGCATCATTCCTGCTAGAGGTACGTTCGATCGAGTATGTCCAGTACTTACAGGAAAAAGTACAAAAATATGAGGGTTCATACCAGGGTTGGAGTCCTGAGCCGACAAAATTAATGCCATGGAGAAATAGTCACTGGCGTGTTCAGAGTTTTGTTGGAAATCCTCAGGCCATAAAGAGCGACGCTGCACCAGTGTCACCATTTCCTGGAAAATTTGATGACAATAACATCTCTATCAATCCGAACATGCTGCCAAACAGCACACCGAATCCAGTAGAATCTGACCCTAGCAGGGATGTTGCCTCCAAAATAGTGGATCGGCAACCTGAGATAGTGAACAAGGGGATTCCTCTGCCTATGCCTCTACCAATGACTCCCCCGGTCAGAAGTGATGGTGTGCTTGCCCATCCTCTCCAGGGACAAATTTCTGATGCTCAATCAACTCAGTGCCCCACCACTAGCGCTAGCGATGTGCTGAGCCAACAGGAGGAGCTGACAATTGAAGGTGGAACAATAAGCATCTCAAGCGTATACTCACAAGGGTTATTAAACTCTCTGAGCCAAGCGCTACAGAGTGCAGGTGTTGATCTGTCGCAGGCTAGTATCTCACTGCAGATCGATCTTGGGAATCGTGCAAACCGAGGGCTGTCCTCTGGAACACCTGCCTCAAAGGATAATGATAATCCCCACTCAAGCAATCAGACGATGGCGCATTTTAGGGATGCTGGCAGCGGAGAGGACTCCGATCATGCCCATAAGCGCCTCAAGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

336

Amino Acids

36.89

Weight (kDa)

5.8

Isoelectric Point (pI)

57.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 45 - 96 1.4e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69010
fragaria_vesca FvH4_4g29230 FvH4_4g29230
malus_domestica MD13G1056100.v1.1 MD16G1055100.v1.1
prunus_persica Prupe.1G294200_v2.0.a1 Prupe.1G294200_v2.0.a1
pyrus_communis pycom13g04970 pycom16g04800
rosa_chinensis RchiOBHm_Chr4g0437281
rosa_laevigata RLG00000006450
rosa_multiflora Rmu_sc0004339.1_g000031
rosa_roxburghii Rroxscaffold_5G00378420
rosa_rugosa Rorug04G0299200
rosa_samantha Rh4AG354000 Rh4BG363900 Rh4CG378200 Rh4DG357900
rosa_wichuraiana Rw4G031050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 803, 904
Acc36I ACCTGC 2 cut(s) 803, 904
AccB7I CCANNNNNTGG 1 cut(s) 440
AccI GTMKAC 1 cut(s) 765
AccII CGCG 1 cut(s) 14
AciI CCGC 2 cut(s) 12, 966
AclWI GGATC 1 cut(s) 558
AcsI RAATTY 2 cut(s) 446, 657
AfaI GTAC 4 cut(s) 41, 258, 281, 297
AfeI AGCGCT 2 cut(s) 697, 801
AfiI CCNNNNNNNGG 7 cut(s) 31, 70, 253, 440, 526, 650, 721
AgsI TTSAA 1 cut(s) 737
AjnI CCWGG 4 cut(s) 24, 318, 439, 648
AleI CACNNNNGTG 1 cut(s) 372
AluBI AGCT 1 cut(s) 727
AluI AGCT 1 cut(s) 727
AlwI GGATC 1 cut(s) 558
Aor51HI AGCGCT 2 cut(s) 697, 801
AoxI GGCC 2 cut(s) 73, 402
ApaI GGGCCC 1 cut(s) 77
ApeKI GCWGC 3 cut(s) 419, 484, 963
ApoI RAATTY 2 cut(s) 446, 657
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AseI ATTAAT 1 cut(s) 347
AspLEI GCGC 4 cut(s) 698, 802, 946, 996
AspS9I GGNCC 2 cut(s) 73, 74
AsuC2I CCSGG 2 cut(s) 64, 614
AsuHPI GGTGA 1 cut(s) 423
AsuNHI GCTAGC 1 cut(s) 698
AxyI CCTNAGG 1 cut(s) 399
BaeGI GKGCMC 2 cut(s) 77, 686
BanII GRGCYC 1 cut(s) 77
BbvI GCAGC 3 cut(s) 406, 471, 975
BccI CCATC 3 cut(s) 620, 648, 934
BcgI CGANNNNNNTGC 2 cut(s) 466, 500
BciT130I CCWGG 4 cut(s) 26, 320, 441, 650
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 2 cut(s) 64, 614
BfaI CTAG 6 cut(s) 123, 251, 522, 693, 699, 834
BfmI CTRYAG 2 cut(s) 803, 845
BfoI RGCGCY 3 cut(s) 699, 803, 997
BfuAI ACCTGC 2 cut(s) 803, 904
BglII AGATCT 1 cut(s) 202
BisI GCNGC 3 cut(s) 420, 485, 964
BlpI GCTNAGC 1 cut(s) 710
BlsI GCNGC 3 cut(s) 421, 486, 965
BmcAI AGTACT 1 cut(s) 281
Bme1390I CCNGG 6 cut(s) 26, 64, 320, 441, 614, 650
BmgT120I GGNCC 2 cut(s) 73, 74
BmiI GGNNCC 2 cut(s) 61, 75
BmrFI CCNGG 6 cut(s) 26, 64, 320, 441, 614, 650
BmsI GCATC 5 cut(s) 91, 248, 655, 762, 946
BmtI GCTAGC 1 cut(s) 702
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BpmI CTGGAG 1 cut(s) 632
Bpu10I CCTNAGC 1 cut(s) 333
Bpu1102I GCTNAGC 1 cut(s) 710
BpuEI CTTGAG 3 cut(s) 742, 910, 983
BpuMI CCSGG 2 cut(s) 64, 614
Bsa29I ATCGAT 1 cut(s) 852
BsaJI CCNNGG 5 cut(s) 319, 353, 612, 649, 874
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 349, 379
Bsc4I CCNNNNNNNGG 7 cut(s) 31, 70, 253, 440, 526, 650, 721
Bse1I ACTGG 4 cut(s) 277, 374, 425, 506
Bse21I CCTNAGG 1 cut(s) 399
BseBI CCWGG 4 cut(s) 26, 320, 441, 650
BseCI ATCGAT 1 cut(s) 852
BseDI CCNNGG 5 cut(s) 319, 353, 612, 649, 874
BseGI GGATG 3 cut(s) 535, 640, 961
BseLI CCNNNNNNNGG 7 cut(s) 31, 70, 253, 440, 526, 650, 721
BseMII CTCAG 6 cut(s) 324, 413, 552, 692, 701, 782
BseNI ACTGG 4 cut(s) 277, 374, 425, 506
BseRI GAGGAG 6 cut(s) 44, 65, 175, 178, 181, 737
BseSI GKGCMC 2 cut(s) 77, 686
BseXI GCAGC 3 cut(s) 406, 471, 975
BsgI GTGCAG 2 cut(s) 405, 831
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 2 cut(s) 137, 267
BshFI GGCC 2 cut(s) 75, 404
BshVI ATCGAT 1 cut(s) 852
BsiEI CGRYCG 2 cut(s) 137, 267
BsiSI CCGG 2 cut(s) 64, 614
BslFI GGGAC 1 cut(s) 666
BslI CCNNNNNNNGG 7 cut(s) 31, 70, 253, 440, 526, 650, 721
BsmFI GGGAC 1 cut(s) 666
BsnI GGCC 2 cut(s) 75, 404
Bsp120I GGGCCC 1 cut(s) 73
Bsp1286I GDGCHC 2 cut(s) 77, 686
Bsp1720I GCTNAGC 1 cut(s) 710
Bsp19I CCATGG 1 cut(s) 353
BspACI CCGC 2 cut(s) 12, 966
BspANI GGCC 2 cut(s) 75, 404
BspCNI CTCAG 6 cut(s) 325, 412, 553, 691, 702, 783
BspDI ATCGAT 1 cut(s) 852
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 61, 75
BspMAI CTGCAG 1 cut(s) 849
BspMI ACCTGC 2 cut(s) 803, 904
BspOI GCTAGC 1 cut(s) 702
BspPI GGATC 1 cut(s) 558
BsrI ACTGG 4 cut(s) 277, 374, 425, 506
BssECI CCNNGG 5 cut(s) 319, 353, 612, 649, 874
BssNAI GTATAC 1 cut(s) 766
BssT1I CCWWGG 1 cut(s) 353
Bst1107I GTATAC 1 cut(s) 766
Bst2UI CCWGG 4 cut(s) 26, 320, 441, 650
BstC8I GCNNGC 4 cut(s) 636, 700, 831, 961
BstDEI CTNAG 6 cut(s) 333, 399, 561, 678, 710, 791
BstDSI CCRYGG 1 cut(s) 353
BstENI CCTNNNNNAGG 1 cut(s) 251
BstF5I GGATG 3 cut(s) 535, 640, 961
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 3 cut(s) 699, 803, 997
BstHHI GCGC 4 cut(s) 698, 802, 946, 996
BstMCI CGRYCG 2 cut(s) 137, 267
BstMWI GCNNNNNNNGC 1 cut(s) 759
BstNI CCWGG 4 cut(s) 26, 320, 441, 650
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 6 cut(s) 24, 62, 318, 439, 612, 648
BstSFI CTRYAG 2 cut(s) 803, 845
BstSLI GKGCMC 2 cut(s) 77, 686
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 3 cut(s) 406, 471, 975
BstX2I RGATCY 1 cut(s) 202
BstXI CCANNNNNNTGG 1 cut(s) 547
BstYI RGATCY 1 cut(s) 202
BstZ17I GTATAC 1 cut(s) 766
Bsu15I ATCGAT 1 cut(s) 852
Bsu36I CCTNAGG 1 cut(s) 399
BsuRI GGCC 2 cut(s) 75, 404
BsuTUI ATCGAT 1 cut(s) 852
BtgI CCRYGG 1 cut(s) 353
BtgZI GCGATG 1 cut(s) 717
BtsCI GGATG 3 cut(s) 535, 640, 961
BtsI GCAGTG 1 cut(s) 842
BtsIMutI CAGTG 4 cut(s) 367, 432, 686, 842
BveI ACCTGC 2 cut(s) 803, 904
Cac8I GCNNGC 4 cut(s) 636, 700, 831, 961
CfoI GCGC 4 cut(s) 698, 802, 946, 996
Cfr13I GGNCC 2 cut(s) 73, 74
ClaI ATCGAT 1 cut(s) 852
CseI GACGC 1 cut(s) 425
Csp6I GTAC 4 cut(s) 40, 257, 280, 296
CviAII CATG 3 cut(s) 354, 481, 983
CviQI GTAC 4 cut(s) 40, 257, 280, 296
DdeI CTNAG 6 cut(s) 333, 399, 561, 678, 710, 791
Eco130I CCWWGG 1 cut(s) 353
Eco24I GRGCYC 1 cut(s) 77
Eco47III AGCGCT 2 cut(s) 697, 801
Eco81I CCTNAGG 1 cut(s) 399
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoO109I RGGNCCY 2 cut(s) 73, 74
EcoRII CCWGG 4 cut(s) 24, 318, 439, 648
EcoT14I CCWWGG 1 cut(s) 353
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 3 cut(s) 357, 484, 986
FaqI GGGAC 1 cut(s) 666
FatI CATG 3 cut(s) 353, 480, 982
FbaI TGATCA 1 cut(s) 220
FblI GTMKAC 1 cut(s) 765
Fnu4HI GCNGC 3 cut(s) 420, 485, 964
FokI GGATG 3 cut(s) 542, 627, 968
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 3 cut(s) 420, 485, 964
FspBI CTAG 6 cut(s) 123, 251, 522, 693, 699, 834
GlaI GCGC 4 cut(s) 697, 801, 945, 995
GluI GCNGC 3 cut(s) 420, 485, 964
GsuI CTGGAG 1 cut(s) 632
HaeII RGCGCY 3 cut(s) 699, 803, 997
HaeIII GGCC 2 cut(s) 75, 404
HapII CCGG 2 cut(s) 64, 614
HgaI GACGC 1 cut(s) 425
HhaI GCGC 4 cut(s) 698, 802, 946, 996
Hin1II CATG 3 cut(s) 357, 484, 986
Hin6I GCGC 4 cut(s) 696, 800, 944, 994
HinP1I GCGC 4 cut(s) 696, 800, 944, 994
HinfI GANTC 8 cut(s) 186, 328, 502, 512, 580, 607, 862, 974
HpaII CCGG 2 cut(s) 64, 614
HphI GGTGA 1 cut(s) 423
Hpy166II GTNNAC 2 cut(s) 571, 766
Hpy188I TCNGA 9 cut(s) 225, 381, 477, 517, 620, 664, 792, 936, 979
Hpy188III TCNNGA 4 cut(s) 190, 332, 888, 1000
Hpy8I GTNNAC 2 cut(s) 571, 766
Hpy99I CGWCG 3 cut(s) 47, 50, 419
HpyAV CCTTC 2 cut(s) 87, 731
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 4 cut(s) 422, 812, 847, 869
HpyF10VI GCNNNNNNNGC 1 cut(s) 759
HpyF3I CTNAG 6 cut(s) 333, 399, 561, 678, 710, 791
HpySE526I ACGT 1 cut(s) 259
Hsp92II CATG 3 cut(s) 357, 484, 986
HspAI GCGC 4 cut(s) 696, 800, 944, 994
Ksp22I TGATCA 1 cut(s) 220
LmnI GCTCC 3 cut(s) 65, 168, 724
Lsp1109I GCAGC 3 cut(s) 406, 471, 975
LweI GCATC 5 cut(s) 91, 248, 655, 762, 946
MaeI CTAG 6 cut(s) 123, 251, 522, 693, 699, 834
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 3 cut(s) 148, 365, 429
MboII GAAGA 1 cut(s) 72
MfeI CAATTG 1 cut(s) 732
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 2 cut(s) 77, 686
MluCI AATT 5 cut(s) 85, 344, 446, 657, 732
MlyI GAGTC 3 cut(s) 337, 601, 968
MmeI TCCRAC 3 cut(s) 114, 305, 370
MseI TTAA 2 cut(s) 347, 782
MslI CAYNNNNRTG 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 966
MspI CCGG 2 cut(s) 64, 614
MspR9I CCNGG 6 cut(s) 26, 64, 320, 441, 614, 650
MunI CAATTG 1 cut(s) 732
MvaI CCWGG 4 cut(s) 26, 320, 441, 650
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 759
NciI CCSGG 2 cut(s) 64, 614
NcoI CCATGG 1 cut(s) 353
NheI GCTAGC 1 cut(s) 698
NlaIII CATG 3 cut(s) 357, 484, 986
NlaIV GGNNCC 2 cut(s) 61, 75
NmuCI GTSAC 3 cut(s) 148, 365, 429
NspI RCATGY 1 cut(s) 484
OliI CACNNNNGTG 1 cut(s) 372
PaqCI CACCTGC 2 cut(s) 803, 904
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 871
PfeI GAWTC 5 cut(s) 186, 502, 512, 580, 862
PflMI CCANNNNNTGG 1 cut(s) 440
PfoI TCCNGGA 2 cut(s) 62, 439
PkrI GCNGC 3 cut(s) 421, 486, 965
Ple19I CGATCG 2 cut(s) 137, 267
PleI GAGTC 3 cut(s) 336, 601, 968
PpsI GAGTC 3 cut(s) 336, 601, 968
PshBI ATTAAT 1 cut(s) 347
Psp6I CCWGG 4 cut(s) 24, 318, 439, 648
PspGI CCWGG 4 cut(s) 24, 318, 439, 648
PspN4I GGNNCC 2 cut(s) 61, 75
PspOMI GGGCCC 1 cut(s) 73
PspPI GGNCC 2 cut(s) 73, 74
PstI CTGCAG 1 cut(s) 849
PsuI RGATCY 1 cut(s) 202
PvuI CGATCG 2 cut(s) 137, 267
RsaI GTAC 4 cut(s) 41, 258, 281, 297
RsaNI GTAC 4 cut(s) 40, 257, 280, 296
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 2 cut(s) 347, 782
SatI GCNGC 3 cut(s) 420, 485, 964
Sau96I GGNCC 2 cut(s) 73, 74
ScaI AGTACT 1 cut(s) 281
SchI GAGTC 3 cut(s) 337, 601, 968
ScrFI CCNGG 6 cut(s) 26, 64, 320, 441, 614, 650
SduI GDGCHC 2 cut(s) 77, 686
SetI ASST 7 cut(s) 258, 262, 562, 729, 742, 817, 898
SfaNI GCATC 5 cut(s) 91, 248, 655, 762, 946
SfcI CTRYAG 2 cut(s) 803, 845
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 3 cut(s) 757, 925, 998
SmoI CTYRAG 3 cut(s) 757, 925, 998
Sse9I AATT 5 cut(s) 85, 344, 446, 657, 732
SsiI CCGC 2 cut(s) 12, 966
SspMI CTAG 6 cut(s) 123, 251, 522, 693, 699, 834
StyD4I CCNGG 6 cut(s) 24, 62, 318, 439, 612, 648
StyI CCWWGG 1 cut(s) 353
TaiI ACGT 1 cut(s) 262
TaqI TCGA 4 cut(s) 137, 263, 267, 852
TasI AATT 5 cut(s) 85, 344, 446, 657, 732
TatI WGTACW 2 cut(s) 279, 295
TfiI GAWTC 5 cut(s) 186, 502, 512, 580, 862
Tru1I TTAA 2 cut(s) 347, 782
Tru9I TTAA 2 cut(s) 347, 782
TscAI CASTG 4 cut(s) 374, 432, 686, 849
TseFI GTSAC 3 cut(s) 148, 365, 429
TseI GCWGC 3 cut(s) 419, 484, 963
Tsp45I GTSAC 3 cut(s) 148, 365, 429
TspDTI ATGAA 1 cut(s) 303
TspGWI ACGGA 2 cut(s) 136, 167
TspRI CASTG 4 cut(s) 374, 432, 686, 849
Van91I CCANNNNNTGG 1 cut(s) 440
VspI ATTAAT 1 cut(s) 347
XagI CCTNNNNNAGG 1 cut(s) 251
XapI RAATTY 2 cut(s) 446, 657
XceI RCATGY 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 765
XspI CTAG 6 cut(s) 123, 251, 522, 693, 699, 834
ZrmI AGTACT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.