pycom16g06490

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0010826
Physical Location & Seq
Forward (+)
4166237 .. 4166931
695 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ATGACAATCTTCGAGCTCACATTCGCCAAAGTCCTTGAATGCCTTCCTGTATGGACTTATGCCAAGTTGATATTCACATGTTGGTTGGTGCTGCCACAATTCAATGGAGCTGCATATGTTTATCGACGATTCATCAGACCATACTATATGAACCCACAAACTGCTCATCAGATGTGGTATTTCCCAAGAAAGAAGGGCGCCGGCCTCTTCAGCAAGCCGGATGACGTTTTAACCGCTGCCGAAAAATACATGGAAGAGAATGGGACTGATGCATTTGAAAGGCTCATAAGCAAGGTTGATCGAGAAAGAACCAGCAGGAAGAGCAACAATTACATGATCTTTGATGATGATTATATGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

121

Amino Acids

14.39

Weight (kDa)

8.5

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 1 - 48 2.8e-14 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69700
fragaria_vesca FvH4_4g31530 FvH4_4g31530
malus_domestica MD13G1073600.v1.1 MD16G1074900.v1.1
prunus_persica Prupe.1G272400_v2.0.a1
pyrus_communis pycom16g06490
rosa_chinensis RchiOBHm_Chr4g0440041
rosa_laevigata RLG00000006213
rosa_multiflora Rmu_sc0001685.1_g000002 Rmu_sc0022520.1_g000002
rosa_roxburghii Rroxscaffold_5G00380980
rosa_rugosa Rorug04G0323400 Rorug04G0323500 Rorug04G0323600
rosa_samantha Rh4AG374400 Rh4BG386700 Rh4CG401200 Rh4DG381000
rosa_wichuraiana Rw4G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AciI CCGC 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 193
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 359
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 3 cut(s) 38, 103, 278
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 2 cut(s) 16, 110
AluI AGCT 2 cut(s) 16, 110
Alw21I GWGCWC 1 cut(s) 18
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 3 cut(s) 91, 110, 236
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 200
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 3 cut(s) 78, 97, 223
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 3 cut(s) 92, 111, 237
BlsI GCNGC 3 cut(s) 93, 112, 238
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 198
Bse118I RCCGGY 1 cut(s) 200
BseGI GGATG 1 cut(s) 226
BseXI GCAGC 3 cut(s) 78, 97, 223
BshFI GGCC 1 cut(s) 204
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 2 cut(s) 201, 218
BslFI GGGAC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 44
BsnI GGCC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 298, 336
BspACI CCGC 1 cut(s) 234
BspANI GGCC 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 199
BspQI GCTCTTC 1 cut(s) 314
BspT107I GGYRCC 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 200
BssMI GATC 2 cut(s) 298, 336
BssNI GRCGYC 1 cut(s) 198
Bst6I CTCTTC 3 cut(s) 212, 249, 314
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 2 cut(s) 202, 215
BstF5I GGATG 1 cut(s) 226
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 2 cut(s) 301, 339
BstMBI GATC 2 cut(s) 298, 336
BstMWI GCNNNNNNNGC 2 cut(s) 210, 321
BstNSI RCATGY 1 cut(s) 81
BstV1I GCAGC 3 cut(s) 78, 97, 223
BsuRI GGCC 1 cut(s) 204
BtsCI GGATG 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 202, 215
CfoI GCGC 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 200
Csp6I GTAC 1 cut(s) 358
CviAII CATG 3 cut(s) 78, 250, 334
CviJI RGCY 5 cut(s) 16, 110, 204, 217, 283
CviKI_1 RGCY 5 cut(s) 16, 110, 204, 217, 283
CviQI GTAC 1 cut(s) 358
DinI GGCGCC 1 cut(s) 199
DpnI GATC 2 cut(s) 300, 338
DpnII GATC 2 cut(s) 298, 336
Eam1104I CTCTTC 3 cut(s) 212, 249, 314
EarI CTCTTC 3 cut(s) 212, 249, 314
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 16
EcoT22I ATGCAT 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 18
EgeI GGCGCC 1 cut(s) 199
EheI GGCGCC 1 cut(s) 199
FaeI CATG 3 cut(s) 81, 253, 337
FaqI GGGAC 1 cut(s) 277
FatI CATG 3 cut(s) 77, 249, 333
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 92, 111, 237
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 3 cut(s) 92, 111, 237
GlaI GCGC 1 cut(s) 199
GluI GCNGC 3 cut(s) 92, 111, 237
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 1 cut(s) 204
HapII CCGG 2 cut(s) 201, 218
HhaI GCGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 3 cut(s) 81, 253, 337
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HinfI GANTC 1 cut(s) 129
HpaII CCGG 2 cut(s) 201, 218
Hpy188I TCNGA 2 cut(s) 137, 171
Hpy188III TCNNGA 1 cut(s) 302
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 2 cut(s) 53, 187
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 2 cut(s) 113, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 321
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 3 cut(s) 81, 253, 337
HspAI GCGC 1 cut(s) 198
KasI GGCGCC 1 cut(s) 197
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 2 cut(s) 298, 336
LguI GCTCTTC 1 cut(s) 314
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 5 cut(s) 60, 214, 231, 301, 325
Lsp1109I GCAGC 3 cut(s) 78, 97, 223
LweI GCATC 1 cut(s) 259
MaeII ACGT 1 cut(s) 225
MalI GATC 2 cut(s) 300, 338
MboI GATC 2 cut(s) 298, 336
MboII GAAGA 3 cut(s) 199, 266, 331
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 2 cut(s) 98, 328
Mly113I GGCGCC 1 cut(s) 198
MnlI CCTC 1 cut(s) 215
Mph1103I ATGCAT 1 cut(s) 274
MroNI GCCGGC 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 2 cut(s) 201, 218
Mva1269I GAATGC 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 210, 321
NaeI GCCGGC 1 cut(s) 202
NarI GGCGCC 1 cut(s) 198
NdeI CATATG 1 cut(s) 115
NdeII GATC 2 cut(s) 298, 336
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 3 cut(s) 81, 253, 337
NlaIV GGNNCC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 274
NspI RCATGY 1 cut(s) 81
PciI ACATGT 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 314
PctI GAATGC 1 cut(s) 44
PdiI GCCGGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 129
PkrI GCNGC 3 cut(s) 93, 112, 238
PluTI GGCGCC 1 cut(s) 201
PscI ACATGT 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 199
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SacI GAGCTC 1 cut(s) 18
SapI GCTCTTC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 3 cut(s) 92, 111, 237
Sau3AI GATC 2 cut(s) 298, 336
SduI GDGCHC 1 cut(s) 18
SetI ASST 4 cut(s) 18, 112, 228, 297
SfaNI GCATC 1 cut(s) 259
SfoI GGCGCC 1 cut(s) 199
Sse9I AATT 2 cut(s) 98, 328
SsiI CCGC 1 cut(s) 234
SspDI GGCGCC 1 cut(s) 197
SstI GAGCTC 1 cut(s) 18
TaiI ACGT 1 cut(s) 228
TaqI TCGA 3 cut(s) 12, 124, 301
TasI AATT 2 cut(s) 98, 328
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TseI GCWGC 3 cut(s) 91, 110, 236
TspDTI ATGAA 2 cut(s) 121, 164
XceI RCATGY 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.