pycom16g06820

Protein TWIN LOV

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
4418698 .. 4421446
2749 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1305 bp
ATGAGCTCACTTTCTCACAAAATATGTTCATCAAAGGTGCTATCCTTACATTTCATATGTCATAAAACTCACCCAGTAATCAATGGGCGACGCCAATTGATAAAATTCTTTGAATTTCTGCGTGCTCTGTTTTGTGGAAGTGATTGGAGAACAGGGACGATGGAATCGGAGCTGGGTTTAATTGAGCAGTCGTTCATCAGCCGCTACTCGCTCTGGGTCCAGGAAGCTCTGGGGGAATTGGCCGACAGCTTCACGATCACTGACCCTTGGATTTCCGGGCACCCAATCGTGTTCGCGAGCAAAGAGTTCCTGAAAATGTCGGGATATTCGATGAACGAGGTGGTCGGGAGGAACGGCAGAGTGTTTCAGGGTCCGGGGACTTGCAGGCGGTCGGTCATGAAGGTCCGGGAGGCCATCAGGGAGGAGCGACCTGTCCAGGTTAATTTGCTGAATTATCGGAAAGACGGTACGCCGTTTTGGATGCTGTTTCATATGTGTCCTGTTTTTGGGAAGGAGGACGGGAGGGTGATTCATTTCGTGGGAGTTCAGGTTCCGATTTTGAGGGAGCCGAGGCGGTCTGGTGGGAGAAATGGGGTTGGTTTGTGTGAGGAGGGGTCTAGGATGAGTGAGATTGTTTACGGATCGTGTAGAAAAGAGGTGTGCTTTGATTCTTTGGTTGATTTGGGTCGTGTTTTGTCATTGGAATCTGCATTGGATGATGCTGATAGCAGAGGATTCAACATTGAAGAATCGTGTGAGGCGAGTGATGTAGAGAAGACGAGAGCTGCAACTGCGATTAATAACATCTTGTCCAAGGTTTCATGCTTTCTGAAGATTGCTGATGATTGTACGTTTTGTTTGCTTCGATATGATTGTGTTGGTTTCAGAACTGATTCGCACTTACCAGATATGCCTATAGTTTATGCAAGTGATGCCTTCTTCAAATTGACAGGTTATGCTAGACATGAAGTCTTGGGGCGCAATTGTAGATTTTTGAGTGGGGCGGATACAGATCCCTCAATGATATGTCGGATAAAGGAAAGCATTCAAAACGAAACAGCATGCACAGTATGTATCTTGAATTACAGGAGGGATAAAAGTTCATTTTGGAATCTCCTTCACATATCACCTATTCGTAATGCTTCTGGCAAGATTGCGTACTTTGTGGGTGTTCAGATGGAAGAAGGGTGTAAGAACCAGGTCGAACATGGGCTAAGCCCTGAGATGAGGCAGCTTAGCGCTGTTGGTGCTGTCAGAATTGCAGTGCGGAGCTTAACAATGGGTGCCGGCCCTTCCAAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

435

Amino Acids

48.64

Weight (kDa)

8.37

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_9 PF13426 94 - 183 1.6e-15 PAS domain
PAS_9 PF13426 302 - 392 2.1e-17 PAS domain
PAS PF00989 306 - 392 2.1e-07 PAS fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 279, 1283
AccII CGCG 1 cut(s) 296
AciI CCGC 5 cut(s) 202, 388, 574, 1004, 1267
AclWI GGATC 2 cut(s) 649, 1007
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 2 cut(s) 104, 113
AcuI CTGAAG 1 cut(s) 851
AcyI GRCGYC 1 cut(s) 91
AfaI GTAC 3 cut(s) 469, 850, 1160
AfeI AGCGCT 1 cut(s) 1240
AfiI CCNNNNNNNGG 1 cut(s) 506
AgsI TTSAA 6 cut(s) 113, 739, 746, 943, 1049, 1081
AhdI GACNNNNNGTC 1 cut(s) 968
AjnI CCWGG 3 cut(s) 219, 435, 1197
AloI GAACNNNNNNTCC 2 cut(s) 534, 566
AluBI AGCT 7 cut(s) 6, 172, 227, 249, 785, 1234, 1272
AluI AGCT 7 cut(s) 6, 172, 227, 249, 785, 1234, 1272
Alw21I GWGCWC 2 cut(s) 8, 127
AlwI GGATC 2 cut(s) 649, 1007
Aor51HI AGCGCT 1 cut(s) 1240
AoxI GGCC 3 cut(s) 240, 411, 1288
ApeKI GCWGC 2 cut(s) 785, 1231
ApoI RAATTY 2 cut(s) 104, 113
AseI ATTAAT 1 cut(s) 798
Asp700I GAANNNNTTC 2 cut(s) 892, 1044
AspLEI GCGC 2 cut(s) 981, 1241
AspS9I GGNCC 4 cut(s) 217, 371, 403, 1289
AsuC2I CCSGG 3 cut(s) 277, 375, 407
AsuHPI GGTGA 3 cut(s) 62, 538, 1119
AvaII GGWCC 3 cut(s) 217, 371, 403
BaeGI GKGCMC 1 cut(s) 282
BanI GGYRCC 2 cut(s) 279, 1283
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 782
Bbv12I GWGCWC 2 cut(s) 8, 127
BbvI GCAGC 2 cut(s) 772, 1243
BccI CCATC 3 cut(s) 154, 422, 1171
BceAI ACGGC 2 cut(s) 370, 457
BciT130I CCWGG 3 cut(s) 221, 437, 1199
BciVI GTATCC 1 cut(s) 1000
BcnI CCSGG 3 cut(s) 277, 375, 407
BfaI CTAG 2 cut(s) 618, 960
BfmI CTRYAG 1 cut(s) 915
BfoI RGCGCY 1 cut(s) 1242
BfuI GTATCC 1 cut(s) 1000
BisI GCNGC 3 cut(s) 202, 786, 1232
BlpI GCTNAGC 2 cut(s) 1214, 1235
BlsI GCNGC 3 cut(s) 203, 787, 1233
Bme1390I CCNGG 6 cut(s) 221, 277, 375, 407, 437, 1199
Bme18I GGWCC 3 cut(s) 217, 371, 403
BmeRI GACNNNNNGTC 1 cut(s) 968
BmgT120I GGNCC 4 cut(s) 217, 371, 403, 1289
BmiI GGNNCC 6 cut(s) 218, 281, 372, 552, 567, 1285
BmrFI CCNGG 6 cut(s) 221, 277, 375, 407, 437, 1199
BmrI ACTGGG 1 cut(s) 68
BmsI GCATC 3 cut(s) 471, 709, 922
BmuI ACTGGG 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 782
Bpu1102I GCTNAGC 2 cut(s) 1214, 1235
BpuMI CCSGG 3 cut(s) 277, 375, 407
BsaBI GATNNNNATC 1 cut(s) 1011
BsaHI GRCGYC 1 cut(s) 91
BsaJI CCNNGG 4 cut(s) 266, 374, 569, 813
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse118I RCCGGY 1 cut(s) 1286
Bse1I ACTGG 1 cut(s) 74
Bse8I GATNNNNATC 1 cut(s) 1011
BseBI CCWGG 3 cut(s) 221, 437, 1199
BseDI CCNNGG 4 cut(s) 266, 374, 569, 813
BseGI GGATG 3 cut(s) 486, 627, 721
BseJI GATNNNNATC 1 cut(s) 1011
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMII CTCAG 1 cut(s) 1212
BseNI ACTGG 1 cut(s) 74
BseRI GAGGAG 2 cut(s) 437, 623
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 2 cut(s) 772, 1243
BseYI CCCAGC 1 cut(s) 172
Bsh1236I CGCG 1 cut(s) 296
Bsh1285I CGRYCG 1 cut(s) 392
BshFI GGCC 3 cut(s) 242, 413, 1290
BshNI GGYRCC 2 cut(s) 279, 1283
BsiEI CGRYCG 1 cut(s) 392
BsiHKAI GWGCWC 2 cut(s) 8, 127
BsiSI CCGG 4 cut(s) 276, 374, 406, 1287
BslFI GGGAC 2 cut(s) 169, 391
BslI CCNNNNNNNGG 1 cut(s) 506
BsmFI GGGAC 2 cut(s) 169, 391
BsmI GAATGC 1 cut(s) 1044
BsnI GGCC 3 cut(s) 242, 413, 1290
Bsp1286I GDGCHC 3 cut(s) 8, 127, 282
Bsp143I GATC 3 cut(s) 255, 641, 1012
Bsp1720I GCTNAGC 2 cut(s) 1214, 1235
Bsp68I TCGCGA 1 cut(s) 296
BspACI CCGC 5 cut(s) 202, 388, 574, 1004, 1267
BspANI GGCC 3 cut(s) 242, 413, 1290
BspCNI CTCAG 1 cut(s) 1213
BspFNI CGCG 1 cut(s) 296
BspHI TCATGA 1 cut(s) 396
BspLI GGNNCC 6 cut(s) 218, 281, 372, 552, 567, 1285
BspPI GGATC 2 cut(s) 649, 1007
BspT107I GGYRCC 2 cut(s) 279, 1283
BsrFI RCCGGY 1 cut(s) 1286
BsrI ACTGG 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 1286
BssECI CCNNGG 4 cut(s) 266, 374, 569, 813
BssMI GATC 3 cut(s) 255, 641, 1012
BssNI GRCGYC 1 cut(s) 91
BssT1I CCWWGG 2 cut(s) 266, 813
Bst2UI CCWGG 3 cut(s) 221, 437, 1199
Bst4CI ACNGT 2 cut(s) 467, 1069
BstACI GRCGYC 1 cut(s) 91
BstAPI GCANNNNNTGC 1 cut(s) 932
BstC8I GCNNGC 5 cut(s) 123, 298, 386, 1063, 1288
BstDEI CTNAG 3 cut(s) 1214, 1221, 1235
BstF5I GGATG 3 cut(s) 486, 627, 721
BstFNI CGCG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 1242
BstHHI GCGC 2 cut(s) 981, 1241
BstKTI GATC 3 cut(s) 258, 644, 1015
BstMBI GATC 3 cut(s) 255, 641, 1012
BstMCI CGRYCG 1 cut(s) 392
BstMWI GCNNNNNNNGC 3 cut(s) 791, 932, 1247
BstNI CCWGG 3 cut(s) 221, 437, 1199
BstNSI RCATGY 1 cut(s) 1065
BstSCI CCNGG 6 cut(s) 219, 275, 373, 405, 435, 1197
BstSFI CTRYAG 1 cut(s) 915
BstSLI GKGCMC 1 cut(s) 282
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 772, 1243
BstV2I GAAGAC 1 cut(s) 782
BstX2I RGATCY 1 cut(s) 1012
BstYI RGATCY 1 cut(s) 1012
BsuI GTATCC 1 cut(s) 1000
BsuRI GGCC 3 cut(s) 242, 413, 1290
BtsCI GGATG 3 cut(s) 486, 627, 721
BtsI GCAGTG 1 cut(s) 1269
BtsIMutI CAGTG 2 cut(s) 258, 1269
BtuMI TCGCGA 1 cut(s) 296
Cac8I GCNNGC 5 cut(s) 123, 298, 386, 1063, 1288
CciI TCATGA 1 cut(s) 396
CfoI GCGC 2 cut(s) 981, 1241
Cfr10I RCCGGY 1 cut(s) 1286
Cfr13I GGNCC 4 cut(s) 217, 371, 403, 1289
CseI GACGC 1 cut(s) 99
CsiI ACCWGGT 1 cut(s) 1197
Csp6I GTAC 3 cut(s) 468, 849, 1159
CviAII CATG 5 cut(s) 397, 822, 965, 1062, 1208
CviQI GTAC 3 cut(s) 468, 849, 1159
DdeI CTNAG 3 cut(s) 1214, 1221, 1235
DpnI GATC 3 cut(s) 257, 643, 1014
DpnII GATC 3 cut(s) 255, 641, 1012
DriI GACNNNNNGTC 1 cut(s) 968
EaeI YGGCCR 1 cut(s) 240
Eam1105I GACNNNNNGTC 1 cut(s) 968
EciI GGCGGA 1 cut(s) 1019
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 266, 813
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 3 cut(s) 217, 371, 403
Eco47III AGCGCT 1 cut(s) 1240
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 851
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 3 cut(s) 219, 435, 1197
EcoT14I CCWWGG 2 cut(s) 266, 813
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 266, 813
FaeI CATG 5 cut(s) 400, 825, 968, 1065, 1211
FaqI GGGAC 2 cut(s) 169, 391
FatI CATG 5 cut(s) 396, 821, 964, 1061, 1207
FauNDI CATATG 2 cut(s) 56, 492
Fnu4HI GCNGC 3 cut(s) 202, 786, 1232
FokI GGATG 3 cut(s) 493, 634, 728
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 202, 786, 1232
FspBI CTAG 2 cut(s) 618, 960
GlaI GCGC 2 cut(s) 980, 1240
GluI GCNGC 3 cut(s) 202, 786, 1232
GsaI CCCAGC 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 1242
HaeIII GGCC 3 cut(s) 242, 413, 1290
HapII CCGG 4 cut(s) 276, 374, 406, 1287
HgaI GACGC 1 cut(s) 99
HhaI GCGC 2 cut(s) 981, 1241
Hin1I GRCGYC 1 cut(s) 91
Hin1II CATG 5 cut(s) 400, 825, 968, 1065, 1211
Hin6I GCGC 2 cut(s) 979, 1239
HinP1I GCGC 2 cut(s) 979, 1239
HinfI GANTC 8 cut(s) 164, 529, 668, 704, 735, 749, 893, 1111
HpaII CCGG 4 cut(s) 276, 374, 406, 1287
HphI GGTGA 3 cut(s) 62, 538, 1119
Hpy166II GTNNAC 1 cut(s) 637
Hpy188I TCNGA 8 cut(s) 169, 459, 555, 831, 887, 1032, 1176, 1256
Hpy188III TCNNGA 7 cut(s) 253, 295, 310, 321, 346, 397, 1078
Hpy8I GTNNAC 1 cut(s) 637
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 6 cut(s) 394, 505, 946, 1127, 1178, 1302
HpyCH4III ACNGT 2 cut(s) 467, 1069
HpyCH4IV ACGT 1 cut(s) 851
HpyCH4V TGCA 6 cut(s) 384, 710, 788, 926, 1065, 1262
HpyF10VI GCNNNNNNNGC 3 cut(s) 791, 932, 1247
HpyF3I CTNAG 3 cut(s) 1214, 1221, 1235
HpySE526I ACGT 1 cut(s) 851
Hsp92I GRCGYC 1 cut(s) 91
Hsp92II CATG 5 cut(s) 400, 825, 968, 1065, 1211
HspAI GCGC 2 cut(s) 979, 1239
KroI GCCGGC 1 cut(s) 1286
KroNI GCCGGC 1 cut(s) 1288
Kzo9I GATC 3 cut(s) 255, 641, 1012
LmnI GCTCC 4 cut(s) 169, 424, 565, 1269
Lsp1109I GCAGC 2 cut(s) 772, 1243
LweI GCATC 3 cut(s) 471, 709, 922
MabI ACCWGGT 1 cut(s) 1197
MaeI CTAG 2 cut(s) 618, 960
MaeII ACGT 1 cut(s) 851
MalI GATC 3 cut(s) 257, 643, 1014
MboI GATC 3 cut(s) 255, 641, 1012
MboII GAAGA 5 cut(s) 758, 787, 844, 931, 1193
MfeI CAATTG 2 cut(s) 95, 982
MflI RGATCY 1 cut(s) 1012
MhlI GDGCHC 3 cut(s) 8, 127, 282
MmeI TCCRAC 1 cut(s) 1010
MroNI GCCGGC 1 cut(s) 1286
MroXI GAANNNNTTC 2 cut(s) 892, 1044
MseI TTAA 5 cut(s) 179, 441, 798, 1274, 1303
MspI CCGG 4 cut(s) 276, 374, 406, 1287
MspR9I CCNGG 6 cut(s) 221, 277, 375, 407, 437, 1199
MunI CAATTG 2 cut(s) 95, 982
Mva1269I GAATGC 1 cut(s) 1044
MvaI CCWGG 3 cut(s) 221, 437, 1199
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 3 cut(s) 791, 932, 1247
NaeI GCCGGC 1 cut(s) 1288
NciI CCSGG 3 cut(s) 277, 375, 407
NdeI CATATG 2 cut(s) 56, 492
NdeII GATC 3 cut(s) 255, 641, 1012
NgoMIV GCCGGC 1 cut(s) 1286
NlaIII CATG 5 cut(s) 400, 825, 968, 1065, 1211
NlaIV GGNNCC 6 cut(s) 218, 281, 372, 552, 567, 1285
NmeAIII GCCGAG 1 cut(s) 594
NruI TCGCGA 1 cut(s) 296
NspI RCATGY 1 cut(s) 1065
PaeI GCATGC 1 cut(s) 1065
PagI TCATGA 1 cut(s) 396
PcsI WCGNNNNNNNCGW 2 cut(s) 326, 758
PctI GAATGC 1 cut(s) 1044
PdiI GCCGGC 1 cut(s) 1288
PdmI GAANNNNTTC 2 cut(s) 892, 1044
PfeI GAWTC 8 cut(s) 164, 529, 668, 704, 735, 749, 893, 1111
PfoI TCCNGGA 2 cut(s) 219, 405
PkrI GCNGC 3 cut(s) 203, 787, 1233
PshBI ATTAAT 1 cut(s) 798
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 3 cut(s) 219, 435, 1197
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 3 cut(s) 219, 435, 1197
PspN4I GGNNCC 6 cut(s) 218, 281, 372, 552, 567, 1285
PspPI GGNCC 4 cut(s) 217, 371, 403, 1289
PsuI RGATCY 1 cut(s) 1012
RruI TCGCGA 1 cut(s) 296
RsaI GTAC 3 cut(s) 469, 850, 1160
RsaNI GTAC 3 cut(s) 468, 849, 1159
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 5 cut(s) 179, 441, 798, 1274, 1303
SatI GCNGC 3 cut(s) 202, 786, 1232
Sau3AI GATC 3 cut(s) 255, 641, 1012
Sau96I GGNCC 4 cut(s) 217, 371, 403, 1289
ScrFI CCNGG 6 cut(s) 221, 277, 375, 407, 437, 1199
SduI GDGCHC 3 cut(s) 8, 127, 282
SexAI ACCWGGT 1 cut(s) 1197
SfaNI GCATC 3 cut(s) 471, 709, 922
SfcI CTRYAG 1 cut(s) 915
SinI GGWCC 3 cut(s) 217, 371, 403
SphI GCATGC 1 cut(s) 1065
SsiI CCGC 5 cut(s) 202, 388, 574, 1004, 1267
SspMI CTAG 2 cut(s) 618, 960
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 6 cut(s) 219, 275, 373, 405, 435, 1197
StyI CCWWGG 2 cut(s) 266, 813
TaaI ACNGT 2 cut(s) 467, 1069
TaiI ACGT 1 cut(s) 854
TaqI TCGA 3 cut(s) 329, 865, 1203
TaqII GACCGA 1 cut(s) 382
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 8 cut(s) 164, 529, 668, 704, 735, 749, 893, 1111
Tru1I TTAA 5 cut(s) 179, 441, 798, 1274, 1303
Tru9I TTAA 5 cut(s) 179, 441, 798, 1274, 1303
TscAI CASTG 2 cut(s) 265, 1269
TseI GCWGC 2 cut(s) 785, 1231
TspGWI ACGGA 1 cut(s) 654
TspRI CASTG 2 cut(s) 265, 1269
VpaK11BI GGWCC 3 cut(s) 217, 371, 403
VspI ATTAAT 1 cut(s) 798
XapI RAATTY 2 cut(s) 104, 113
XceI RCATGY 1 cut(s) 1065
XcmI CCANNNNNNNNNTGG 1 cut(s) 1205
XmnI GAANNNNTTC 2 cut(s) 892, 1044
XspI CTAG 2 cut(s) 618, 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.