Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005286

Physical Location & Seq

Genomic Coordinates Reverse (-)

4556234 .. 4558480

Gene Structure 2247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2247 bp

ATGAAGAGGCGAGCCATCTTGTCAGTCTGTTGTTTTCAGATCTCCTATCATCGTCCTTGCTTAAATCTTGCTGTAAATTCTTCACTATTCATCTTTAGGAGATGTTTGAGTCATGGAATTTCCTTAGGAGCAACACATACAAGGCCTTTTCCTGACTATTCCCCCAAGAAACCGTCCATCAAAGATGCCGAACTTGTACATCACATCTCCACCACAATTAAGCTTCGCTGCTCTGAGCCTTTTTGCAGTATTCTGAAGCCTTATGAATCTCATTTCAGGTCTGACCATCTTATTTGGGTCCTCATGAATATTAAGAATGACTATAAACTAGTGTTGGATTTGTTTGACTGGGCATGCTTACGAAGGGACCCATCATTAGAAGCCCACTGTGTCGTTGTACAAATTGCTGCAGCATCAAAGGATCTTAAAACAGCGCATGAGCTTATTCATAATTTTTGGGCAAAACCCAAGTTAGATGTTAGTGTTTCATTCGCTCGCTTTTCTGATCGGTTGATATACACTTACAAGGATTGGGGTTCAGATCCCCATGTGTTTGATGTTTACTTCCAGATCCTTGTTGAAACTGGGATGCTCAATGAAGCAAGAAAGCTTTTTGATAAATTGTTGAGCTATGGGTTGGTTATCTCTGTTGATTCCTGTAATTTATTTCTTACTCGGCTATCAAGCACCTTTGATGGGATTGAGATGGCAATAAATTTTTTCAATGAATATCCTGAAGTGGGTTCTCACTGGAACACCATATCATACAATATTATCATTCATTGTCTTTGTCGATTAGGGAAAATAAAAGAAGCCCACCATTTACTCCTGCAAATGGAGTTGAGGGGTTGTATACCTGATGTTGTAAGTTATAGTACTTTAATCAGCAGATATTGTTATGTTGGAGAACTACAGAAGGTGTTGAAGCTCATCGAGGAAATGAAAATAAAAGGATTGATGCAAAATTCCTATACCTATAACAGCATAATACTCCTTCTATGTAAGACTGGTAAACTATCTGAAGCAGAAATGGTACTGAGGGAGATGATGGTTTTGGGAATACTTCCTGATAATGTTGTCTACACTACTCTAATTGATGGATTCTGTAAGTCGGGGAATGTTCCTGCTGCAAGTAGGCTATTTGACGAAATGCGGGGTAGGAAAGTTGTCCCCGATTATATAACATATACTGCCCTTATTCATGGATTTTGTCAAATAGGGAAGATGACAGAAGCAGATAAGCTCTTCAATGAAATGGTTAGCAGAGGATTAGAACCAGATGAAGTTACTTATACAGCACTTATTGATGGTTATTGCAAAGCAGGTGAGATGATAGAGGCGTTTTCTCTTCACAACCAGATGGTTAACATGGGGCTTACCCCAAATGTTGTCACTTATACGGCACTGGCTGATGGCCTTTGTAAAAGAGGGGAGGTAGATGTAGCAAATGAACTTCTTCATGAGGTGTGTAGGAAGGGCCTTCAGCTTAATGTCTGCACTTACAACTCAATTATTAACGGCCTTTGTAAGTCGGGAAAAATAGCGGAGGCAGAAAAATTGGTGGAACAAATGGAGGCTGCAGGGCCCTGTCCTGATACTATTACTTATACCACTTTGATGGATGCATATTGTAAGATGAGAGACATGACCAAGGCTCAGAAGGTCCTGCGTGAGATGCTTGATAGAGGGCTTCAACCTACAGTTGTCACATTCAATGTGCTGATGAATGGATTTTGTTTGTCAGGAATGGTGGAAGATGCTGAGAGGCTACTCAAGTGGATGTTGGAGAAGGGTATAGTGCCTAATGCCGCAACCTACAATTCTCTCATGAAGCAGTACTGCATTAGAAATAATATGCATACTACGACGGAAATTTATAGGAGCATGTGTGCTGGCGGGGTGATTCCTGATAGCAACACCTATAACATTTTGATAAAAGGGCATTGTAAGGCAAGGAATATGAAAGAGGCATGGTTTTTGCATAAAGAAATGGCAGGGAAGGGATTTATTCCCACGTCAAGTTGTTACAGTGCACTTATTAAGGGTTTTTTCAAGAGAAAGAAATTTGCAGAGGCAAGGGACCTATTCGAAGAAATGAGGAGACATGGTGTGGTTGCAGATAGAGAAACATACAACATTTTTGTTGATATGAACTATGAAGAAGGGAACATGGACATTACTCTTGATCTTTGCGACGAAATTATAGAGAATTGTCTTGTTGGCAAGCCCAAGAACGAAGACACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0012505 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

749

Amino Acids

85.13

Weight (kDa)

7.04

Isoelectric Point (pI)

30.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	252 - 280	4.9e-07	PPR repeat
PPR_2	PF13041	252 - 299	2.4e-14	PPR repeat family
PPR	PF01535	254 - 284	3.5e-06	PPR repeat
PPR_3	PF13812	275 - 331	1.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	282 - 315	2.2e-07	PPR repeat
PPR_2	PF13041	286 - 335	6.5e-13	PPR repeat family
PPR_long	PF17177	305 - 408	7e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	317 - 349	3.5e-07	PPR repeat
PPR_2	PF13041	322 - 370	8.6e-14	PPR repeat family
PPR	PF01535	324 - 354	4.8e-06	PPR repeat
PPR_3	PF13812	345 - 401	1.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	353 - 385	3.7e-12	PPR repeat
PPR_2	PF13041	356 - 405	9.6e-17	PPR repeat family
PPR	PF01535	359 - 388	1.4e-07	PPR repeat
PPR_1	PF12854	389 - 420	9.2e-10	PPR repeat
PPR_2	PF13041	391 - 440	1.5e-20	PPR repeat family
PPR	PF01535	394 - 424	3.3e-09	PPR repeat
PPR_long	PF17177	411 - 486	3.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	414 - 469	1.8e-09	Pentatricopeptide repeat domain
TPR_24	PF23276	421 - 520	7.4e-09	Fungal tetratrico peptide repeats
PPR_1	PF12854	422 - 455	9.9e-13	PPR repeat
PPR_2	PF13041	427 - 475	9.7e-18	PPR repeat family
PPR	PF01535	429 - 459	1.8e-09	PPR repeat
PPR_3	PF13812	450 - 506	1.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	457 - 488	1.6e-09	PPR repeat
PPR_2	PF13041	471 - 510	1e-09	PPR repeat family
PPR_3	PF13812	485 - 545	2.2e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	490 - 574	2.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	492 - 525	5.6e-14	PPR repeat
PPR_2	PF13041	497 - 545	1.9e-16	PPR repeat family
PPR	PF01535	500 - 528	2.3e-07	PPR repeat
PPR_3	PF13812	519 - 577	1.1e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	528 - 559	1e-09	PPR repeat
PPR_2	PF13041	531 - 579	1.1e-17	PPR repeat family
PPR	PF01535	534 - 564	6.8e-08	PPR repeat
PPR_1	PF12854	562 - 594	2.6e-10	PPR repeat
PPR_2	PF13041	566 - 614	6.2e-16	PPR repeat family
PPR	PF01535	569 - 599	7.4e-06	PPR repeat
PPR_2	PF13041	601 - 650	5.1e-13	PPR repeat family
PPR_1	PF12854	633 - 664	5e-08	PPR repeat
PPR_2	PF13041	636 - 685	4.7e-13	PPR repeat family
PPR	PF01535	640 - 669	8.7e-07	PPR repeat
PPR_2	PF13041	671 - 716	1.2e-10	PPR repeat family
PPR	PF01535	675 - 704	2.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05670 AT1G05670 AT1G05670
fragaria_vesca	FvH4_4g35550 FvH4_4g35550
malus_domestica	MD13G1082300.v1.1 MD16G1081400.v1.1
prunus_persica	Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1 Prupe.3G121700_v2.0.a1
pyrus_communis	pycom13g07090 pycom16g07020
rosa_chinensis	RchiOBHm_Chr4g0445191
rosa_laevigata	RLG00000005758
rosa_multiflora	Rmu_co8367507.1_g000001 Rmu_sc0000050.1_g000035
rosa_roxburghii	Rroxscaffold_5G00385710
rosa_rugosa	Rorug04G0359800 Rorug04G0359900
rosa_samantha	Rh4AG420700 Rh4BG432600 Rh4CG447200 Rh4DG428700
rosa_wichuraiana	Rw4G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1313
Acc36I	ACCTGC	1 cut(s)	1313
AccI	GTMKAC	2 cut(s)	853, 1080
AciI	CCGC	4 cut(s)	1153, 1544, 1809, 1896
AclWI	GGATC	3 cut(s)	429, 536, 565
AcsI	RAATTY	6 cut(s)	76, 117, 715, 964, 1872, 2063
AcuI	CTGAAG	4 cut(s)	275, 756, 1041, 1466
AfaI	GTAC	5 cut(s)	198, 399, 877, 1035, 1838
AfiI	CCNNNNNNNGG	3 cut(s)	696, 740, 835
AflIII	ACRYGT	1 cut(s)	2241
AgsI	TTSAA	7 cut(s)	581, 724, 925, 1249, 1694, 1714, 2053
AhlI	ACTAGT	1 cut(s)	328
AjiI	CACGTC	1 cut(s)	2016
AluBI	AGCT	7 cut(s)	223, 442, 610, 630, 928, 1243, 1486
AluI	AGCT	7 cut(s)	223, 442, 610, 630, 928, 1243, 1486
Alw21I	GWGCWC	1 cut(s)	2035
Alw26I	GTCTC	2 cut(s)	1635, 2095
Alw44I	GTGCAC	1 cut(s)	2031
AlwI	GGATC	3 cut(s)	429, 536, 565
AoxI	GGCC	5 cut(s)	143, 1414, 1477, 1519, 1583
ApaI	GGGCCC	1 cut(s)	1587
ApaLI	GTGCAC	1 cut(s)	2031
ApeKI	GCWGC	5 cut(s)	228, 407, 410, 1127, 1577
ApoI	RAATTY	6 cut(s)	76, 117, 715, 964, 1872, 2063
Asp700I	GAANNNNTTC	1 cut(s)	1455
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	7 cut(s)	298, 367, 1477, 1583, 1584, 1663, 2080
AsuHPI	GGTGA	2 cut(s)	1337, 1912
AsuII	TTCGAA	1 cut(s)	2088
AvaII	GGWCC	4 cut(s)	298, 367, 1663, 2080
AxyI	CCTNAGG	1 cut(s)	124
BaeGI	GKGCMC	2 cut(s)	1587, 2035
BanII	GRGCYC	1 cut(s)	1587
Bbv12I	GWGCWC	1 cut(s)	2035
BbvI	GCAGC	5 cut(s)	215, 394, 422, 1114, 1564
BceAI	ACGGC	2 cut(s)	1416, 1534
BcoDI	GTCTC	2 cut(s)	1635, 2095
BcuI	ACTAGT	1 cut(s)	328
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	4 cut(s)	408, 911, 1578, 1698
BfuAI	ACCTGC	1 cut(s)	1313
BglII	AGATCT	1 cut(s)	39
BisI	GCNGC	6 cut(s)	229, 408, 411, 1128, 1578, 1809
BlsI	GCNGC	6 cut(s)	230, 409, 412, 1129, 1579, 1810
BmcAI	AGTACT	2 cut(s)	877, 1838
Bme18I	GGWCC	4 cut(s)	298, 367, 1663, 2080
BmgBI	CACGTC	1 cut(s)	2016
BmgT120I	GGNCC	7 cut(s)	298, 367, 1477, 1583, 1584, 1663, 2080
BmiI	GGNNCC	5 cut(s)	299, 368, 369, 1585, 2081
BmrI	ACTGGG	2 cut(s)	358, 594
BmsI	GCATC	7 cut(s)	175, 422, 579, 948, 1612, 1665, 1747
BmuI	ACTGGG	2 cut(s)	358, 594
Bpu14I	TTCGAA	1 cut(s)	2088
BpuEI	CTTGAG	1 cut(s)	1757
BsaAI	YACGTR	1 cut(s)	2244
BsaJI	CCNNGG	1 cut(s)	1650
BsaXI	ACNNNNNCTCC	4 cut(s)	1873, 1903, 2092, 2122
Bsc4I	CCNNNNNNNGG	3 cut(s)	696, 740, 835
Bse1I	ACTGG	5 cut(s)	353, 589, 755, 1012, 1410
Bse21I	CCTNAGG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	1650
BseGI	GGATG	3 cut(s)	594, 1627, 1785
BseLI	CCNNNNNNNGG	3 cut(s)	696, 740, 835
BseMII	CTCAG	4 cut(s)	225, 1028, 1670, 1752
BseNI	ACTGG	5 cut(s)	353, 589, 755, 1012, 1410
BseRI	GAGGAG	1 cut(s)	2113
BseSI	GKGCMC	2 cut(s)	1587, 2035
BseXI	GCAGC	5 cut(s)	215, 394, 422, 1114, 1564
BsgI	GTGCAG	1 cut(s)	1480
BshFI	GGCC	5 cut(s)	145, 1416, 1479, 1521, 1585
BsiHKAI	GWGCWC	1 cut(s)	2035
BslFI	GGGAC	3 cut(s)	380, 1154, 2093
BslI	CCNNNNNNNGG	3 cut(s)	696, 740, 835
BsmAI	GTCTC	2 cut(s)	1635, 2095
BsmFI	GGGAC	3 cut(s)	380, 1154, 2093
BsnI	GGCC	5 cut(s)	145, 1416, 1479, 1521, 1585
Bsp119I	TTCGAA	1 cut(s)	2088
Bsp120I	GGGCCC	1 cut(s)	1583
Bsp1286I	GDGCHC	2 cut(s)	1587, 2035
Bsp1407I	TGTACA	2 cut(s)	196, 397
Bsp143I	GATC	6 cut(s)	39, 421, 505, 541, 570, 2185
BspACI	CCGC	4 cut(s)	1153, 1544, 1809, 1896
BspANI	GGCC	5 cut(s)	145, 1416, 1479, 1521, 1585
BspCNI	CTCAG	4 cut(s)	226, 1029, 1669, 1753
BspHI	TCATGA	3 cut(s)	303, 1459, 1827
BspLI	GGNNCC	5 cut(s)	299, 368, 369, 1585, 2081
BspMAI	CTGCAG	2 cut(s)	412, 1582
BspMI	ACCTGC	1 cut(s)	1313
BspPI	GGATC	3 cut(s)	429, 536, 565
BspQI	GCTCTTC	1 cut(s)	1250
BspT104I	TTCGAA	1 cut(s)	2088
BsrGI	TGTACA	2 cut(s)	196, 397
BsrI	ACTGG	5 cut(s)	353, 589, 755, 1012, 1410
BssECI	CCNNGG	1 cut(s)	1650
BssMI	GATC	6 cut(s)	39, 421, 505, 541, 570, 2185
BssNAI	GTATAC	1 cut(s)	854
BssT1I	CCWWGG	1 cut(s)	1650
Bst1107I	GTATAC	1 cut(s)	854
Bst4CI	ACNGT	4 cut(s)	174, 389, 1702, 2030
Bst6I	CTCTTC	2 cut(s)	1250, 1353
BstAUI	TGTACA	2 cut(s)	196, 397
BstBAI	YACGTR	1 cut(s)	2244
BstBI	TTCGAA	1 cut(s)	2088
BstC8I	GCNNGC	5 cut(s)	12, 355, 496, 1894, 2225
BstDEI	CTNAG	5 cut(s)	124, 234, 1037, 1656, 1761
BstF5I	GGATG	3 cut(s)	594, 1627, 1785
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	6 cut(s)	42, 424, 508, 544, 573, 2188
BstMAI	GTCTC	2 cut(s)	1635, 2095
BstMBI	GATC	6 cut(s)	39, 421, 505, 541, 570, 2185
BstMWI	GCNNNNNNNGC	1 cut(s)	1675
BstNSI	RCATGY	2 cut(s)	357, 1888
BstSFI	CTRYAG	4 cut(s)	408, 911, 1578, 1698
BstSLI	GKGCMC	2 cut(s)	1587, 2035
BstV1I	GCAGC	5 cut(s)	215, 394, 422, 1114, 1564
BstX2I	RGATCY	4 cut(s)	39, 421, 541, 570
BstXI	CCANNNNNNTGG	1 cut(s)	1618
BstYI	RGATCY	4 cut(s)	39, 421, 541, 570
BstZ17I	GTATAC	1 cut(s)	854
Bsu36I	CCTNAGG	1 cut(s)	124
BsuRI	GGCC	5 cut(s)	145, 1416, 1479, 1521, 1585
BtrI	CACGTC	1 cut(s)	2016
BtsCI	GGATG	3 cut(s)	594, 1627, 1785
BtsIMutI	CAGTG	4 cut(s)	385, 748, 1403, 2035
BveI	ACCTGC	1 cut(s)	1313
Cac8I	GCNNGC	5 cut(s)	12, 355, 496, 1894, 2225
CciI	TCATGA	3 cut(s)	303, 1459, 1827
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	7 cut(s)	298, 367, 1477, 1583, 1584, 1663, 2080
Csp6I	GTAC	5 cut(s)	197, 398, 876, 1034, 1837
CviQI	GTAC	5 cut(s)	197, 398, 876, 1034, 1837
DdeI	CTNAG	5 cut(s)	124, 234, 1037, 1656, 1761
DpnI	GATC	6 cut(s)	41, 423, 507, 543, 572, 2187
DpnII	GATC	6 cut(s)	39, 421, 505, 541, 570, 2185
Eam1104I	CTCTTC	2 cut(s)	1250, 1353
EarI	CTCTTC	2 cut(s)	1250, 1353
Eco130I	CCWWGG	1 cut(s)	1650
Eco147I	AGGCCT	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	1587
Eco47I	GGWCC	4 cut(s)	298, 367, 1663, 2080
Eco57I	CTGAAG	4 cut(s)	275, 756, 1041, 1466
Eco81I	CCTNAGG	1 cut(s)	124
EcoO109I	RGGNCCY	7 cut(s)	298, 367, 1477, 1583, 1584, 1663, 2080
EcoT14I	CCWWGG	1 cut(s)	1650
EcoT22I	ATGCAT	2 cut(s)	1627, 1860
EcoT38I	GRGCYC	1 cut(s)	1587
ErhI	CCWWGG	1 cut(s)	1650
FaqI	GGGAC	3 cut(s)	380, 1154, 2093
FauI	CCCGC	2 cut(s)	1146, 1889
FblI	GTMKAC	2 cut(s)	853, 1080
Fnu4HI	GCNGC	6 cut(s)	229, 408, 411, 1128, 1578, 1809
FokI	GGATG	3 cut(s)	601, 1634, 1792
FriOI	GRGCYC	1 cut(s)	1587
Fsp4HI	GCNGC	6 cut(s)	229, 408, 411, 1128, 1578, 1809
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	6 cut(s)	229, 408, 411, 1128, 1578, 1809
HaeIII	GGCC	5 cut(s)	145, 1416, 1479, 1521, 1585
HhaI	GCGC	1 cut(s)	436
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HincII	GTYRAC	1 cut(s)	1366
HindII	GTYRAC	1 cut(s)	1366
HindIII	AAGCTT	2 cut(s)	221, 608
HinfI	GANTC	5 cut(s)	109, 266, 653, 1101, 1903
HpaI	GTTAAC	1 cut(s)	1366
HphI	GGTGA	2 cut(s)	1337, 1912
Hpy166II	GTNNAC	6 cut(s)	562, 854, 1013, 1081, 1366, 2033
Hpy188I	TCNGA	8 cut(s)	39, 235, 255, 283, 505, 541, 1021, 1659
Hpy8I	GTNNAC	6 cut(s)	562, 854, 1013, 1081, 1366, 2033
Hpy99I	CGWCG	2 cut(s)	1870, 2198
HpyAV	CCTTC	9 cut(s)	357, 910, 1004, 1468, 1490, 1654, 1783, 1993, 2156
HpyCH4III	ACNGT	4 cut(s)	174, 389, 1702, 2030
HpyCH4IV	ACGT	2 cut(s)	2015, 2243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1675
HpyF3I	CTNAG	5 cut(s)	124, 234, 1037, 1656, 1761
HpySE526I	ACGT	2 cut(s)	2015, 2243
HspAI	GCGC	1 cut(s)	434
KflI	GGGWCCC	1 cut(s)	367
KspAI	GTTAAC	1 cut(s)	1366
Kzo9I	GATC	6 cut(s)	39, 421, 505, 541, 570, 2185
LguI	GCTCTTC	1 cut(s)	1250
LmnI	GCTCC	2 cut(s)	128, 1881
Lsp1109I	GCAGC	5 cut(s)	215, 394, 422, 1114, 1564
LweI	GCATC	7 cut(s)	175, 422, 579, 948, 1612, 1665, 1747
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	2 cut(s)	2015, 2243
MaeIII	GTNAC	4 cut(s)	1285, 1390, 1705, 2024
MalI	GATC	6 cut(s)	41, 423, 507, 543, 572, 2187
MboI	GATC	6 cut(s)	39, 421, 505, 541, 570, 2185
MboII	GAAGA	9 cut(s)	16, 72, 1234, 1237, 1340, 1448, 1766, 2102, 2171
MflI	RGATCY	4 cut(s)	39, 421, 541, 570
MhlI	GDGCHC	2 cut(s)	1587, 2035
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	3 cut(s)	315, 883, 1764
Mph1103I	ATGCAT	2 cut(s)	1627, 1860
MroXI	GAANNNNTTC	1 cut(s)	1455
MseI	TTAA	9 cut(s)	62, 219, 312, 426, 881, 1365, 1488, 1515, 2040
MslI	CAYNNNNRTG	1 cut(s)	1616
MwoI	GCNNNNNNNGC	1 cut(s)	1675
NdeII	GATC	6 cut(s)	39, 421, 505, 541, 570, 2185
NlaIV	GGNNCC	5 cut(s)	299, 368, 369, 1585, 2081
NmeAIII	GCCGAG	1 cut(s)	655
NmuCI	GTSAC	2 cut(s)	1390, 1705
NsiI	ATGCAT	2 cut(s)	1627, 1860
NspI	RCATGY	2 cut(s)	357, 1888
NspV	TTCGAA	1 cut(s)	2088
PaeI	GCATGC	1 cut(s)	357
PagI	TCATGA	3 cut(s)	303, 1459, 1827
PaqCI	CACCTGC	1 cut(s)	1313
PceI	AGGCCT	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	1250
PdmI	GAANNNNTTC	1 cut(s)	1455
PfeI	GAWTC	4 cut(s)	266, 653, 1101, 1903
PkrI	GCNGC	6 cut(s)	230, 409, 412, 1129, 1579, 1810
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
Ppu21I	YACGTR	1 cut(s)	2244
PpuMI	RGGWCCY	4 cut(s)	298, 367, 1663, 2080
Psp5II	RGGWCCY	4 cut(s)	298, 367, 1663, 2080
PspN4I	GGNNCC	5 cut(s)	299, 368, 369, 1585, 2081
PspOMI	GGGCCC	1 cut(s)	1583
PspPI	GGNCC	7 cut(s)	298, 367, 1477, 1583, 1584, 1663, 2080
PspPPI	RGGWCCY	4 cut(s)	298, 367, 1663, 2080
PstI	CTGCAG	2 cut(s)	412, 1582
PsuI	RGATCY	4 cut(s)	39, 421, 541, 570
RsaI	GTAC	5 cut(s)	198, 399, 877, 1035, 1838
RsaNI	GTAC	5 cut(s)	197, 398, 876, 1034, 1837
RseI	CAYNNNNRTG	1 cut(s)	1616
SapI	GCTCTTC	1 cut(s)	1250
SaqAI	TTAA	9 cut(s)	62, 219, 312, 426, 881, 1365, 1488, 1515, 2040
SatI	GCNGC	6 cut(s)	229, 408, 411, 1128, 1578, 1809
Sau3AI	GATC	6 cut(s)	39, 421, 505, 541, 570, 2185
Sau96I	GGNCC	7 cut(s)	298, 367, 1477, 1583, 1584, 1663, 2080
ScaI	AGTACT	2 cut(s)	877, 1838
SchI	GAGTC	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	1587, 2035
SfaNI	GCATC	7 cut(s)	175, 422, 579, 948, 1612, 1665, 1747
SfcI	CTRYAG	4 cut(s)	408, 911, 1578, 1698
SfuI	TTCGAA	1 cut(s)	2088
SinI	GGWCC	4 cut(s)	298, 367, 1663, 2080
SmiMI	CAYNNNNRTG	1 cut(s)	1616
SmlI	CTYRAG	1 cut(s)	1772
SmoI	CTYRAG	1 cut(s)	1772
SpeI	ACTAGT	1 cut(s)	328
SphI	GCATGC	1 cut(s)	357
SseBI	AGGCCT	1 cut(s)	145
SsiI	CCGC	4 cut(s)	1153, 1544, 1809, 1896
SspI	AATATT	2 cut(s)	310, 772
SspMI	CTAG	1 cut(s)	329
StuI	AGGCCT	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	1650
TaaI	ACNGT	4 cut(s)	174, 389, 1702, 2030
TaiI	ACGT	2 cut(s)	2018, 2246
TaqI	TCGA	3 cut(s)	793, 933, 2088
TatI	WGTACW	4 cut(s)	196, 397, 875, 1836
TauI	GCSGC	1 cut(s)	1811
TfiI	GAWTC	4 cut(s)	266, 653, 1101, 1903
Tru1I	TTAA	9 cut(s)	62, 219, 312, 426, 881, 1365, 1488, 1515, 2040
Tru9I	TTAA	9 cut(s)	62, 219, 312, 426, 881, 1365, 1488, 1515, 2040
TscAI	CASTG	4 cut(s)	392, 755, 1410, 2035
TseFI	GTSAC	2 cut(s)	1390, 1705
TseI	GCWGC	5 cut(s)	228, 407, 410, 1127, 1577
Tsp45I	GTSAC	2 cut(s)	1390, 1705
TspGWI	ACGGA	1 cut(s)	1883
TspRI	CASTG	4 cut(s)	392, 755, 1410, 2035
VneI	GTGCAC	1 cut(s)	2031
VpaK11BI	GGWCC	4 cut(s)	298, 367, 1663, 2080
XapI	RAATTY	6 cut(s)	76, 117, 715, 964, 1872, 2063
XceI	RCATGY	2 cut(s)	357, 1888
XmiI	GTMKAC	2 cut(s)	853, 1080
XmnI	GAANNNNTTC	1 cut(s)	1455
XspI	CTAG	1 cut(s)	329
ZrmI	AGTACT	2 cut(s)	877, 1838
Zsp2I	ATGCAT	2 cut(s)	1627, 1860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.