Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011823

Physical Location & Seq

Genomic Coordinates Reverse (-)

4791788 .. 4793096

Gene Structure 1309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTGGATTTGAGGATCTCAGCAGAAACCCCCACACTCCGTGACGCAGACAGAAAACTTTCACCTCGCCATTTCTCTCCACCATTTGTCCACTGTATAAAACTTCAGCCACAGAAAGCAGAGCAACCCTTGTTTTTAACTTCTCCGATTCCAATCCGGAAGATGGCGAGGAACGGTGTCGCTTCGTGGCGGAGGAAGTCGGAGAAGCTCGATCTCTCGCCGCCGTTGGTTTCGGAGGAAGCTCACGTTCTCGCCGTCGACGACAGCCTCGTCGATCGCAAGGTCATCGAGCGATTGCTCAAAATTTCCTCCTGCAAAGTGACGACTGTTGACAGCGGAAGAAGAGCTCTGCAGTTCCTCGGCCTGGACGAGGAGAAGAGCTCCACCGCCGGATTCGACGGCTTGAAGGTGGACCTGATCATAACGGATTACTGTATGCCTGGGATGACCGGCTACGAATTGCTCAAGAAAATCAAAGAATCTTCCACATTCAAAGCAACTCCCGTCGTGATTATGTCATCCGAGAACGTTTTGGCGCGCATAGACCGGTGTTTGGAAGAAGGTGCGGAGGACTTCATAGTTAAACCGGTGAAGTTGGCTGACGTCAAGAGGCTGAAGGATTACATGACGACGGCGAGGGATGTCGGAGTGGAAGAGAGCGGTGGAGGAATGAACAAGAGAAAGCTACGCGAGCCGTGTGATCCGACGATGCCTTCATCACCGCCGTCCCTTTTTCCGTCGTCGCCGTCGTCGTCCTCATCGTCTCCGTCTAAATCCCCGTCGCCTCCTTTGTCATCGTCGTTCTCGGCTCCGGCGTCGCCCTCGTCGCCCTCGTCGCTTGGTTCTCCGATCCGACGGTTGAAAATGACCAACGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000156 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010017 GO:0010033 GO:0010114 GO:0010154 GO:0010161 GO:0010468 GO:0010556 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048316 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

294

Amino Acids

32.01

Weight (kDa)

9.13

Isoelectric Point (pI)

76.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	83 - 202	1.5e-21	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59940 AT1G59940
fragaria_vesca	FvH4_4g35230
malus_domestica	MD13G1085200.v1.1 MD16G1084400.v1.1
prunus_persica	Prupe.1G261500_v2.0.a1
pyrus_communis	pycom13g07370 pycom16g07330
rosa_chinensis	RchiOBHm_Chr4g0444831
rosa_laevigata	RLG00000005797
rosa_multiflora	Rmu_sc0000096.1_g000023
rosa_roxburghii	Rroxscaffold_5G00385320
rosa_rugosa	Rorug04G0355400 Rorug04G0355500
rosa_samantha	Rh4AG416800 Rh4BG428700 Rh4CG443400 Rh4DG424500
rosa_wichuraiana	Rw4G035730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AatII	GACGTC	1 cut(s)	606
AccBSI	CCGCTC	1 cut(s)	660
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	2 cut(s)	538, 690
AccIII	TCCGGA	1 cut(s)	156
AciI	CCGC	7 cut(s)	190, 221, 336, 387, 566, 660, 722
AclI	AACGTT	1 cut(s)	528
AclWI	GGATC	3 cut(s)	23, 695, 844
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	2 cut(s)	89, 635
AcyI	GRCGYC	2 cut(s)	603, 815
AdeI	CACNNNGTG	1 cut(s)	41
AfiI	CCNNNNNNNGG	4 cut(s)	163, 364, 370, 553
AgeI	ACCGGT	2 cut(s)	546, 586
AgsI	TTSAA	3 cut(s)	406, 493, 862
AjnI	CCWGG	2 cut(s)	363, 439
AluBI	AGCT	5 cut(s)	208, 242, 347, 381, 685
AluI	AGCT	5 cut(s)	208, 242, 347, 381, 685
Alw21I	GWGCWC	2 cut(s)	349, 383
Alw26I	GTCTC	1 cut(s)	768
AlwI	GGATC	3 cut(s)	23, 695, 844
Aor13HI	TCCGGA	1 cut(s)	156
AoxI	GGCC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	303
AsiGI	ACCGGT	2 cut(s)	546, 586
Asp700I	GAANNNNTTC	1 cut(s)	58
AspLEI	GCGC	2 cut(s)	538, 540
AspS9I	GGNCC	1 cut(s)	412
AsuHPI	GGTGA	3 cut(s)	54, 601, 711
AvaII	GGWCC	1 cut(s)	412
BanII	GRGCYC	2 cut(s)	349, 383
Bbv12I	GWGCWC	2 cut(s)	349, 383
BccI	CCATC	1 cut(s)	157
BceAI	ACGGC	7 cut(s)	208, 239, 415, 648, 679, 709, 730
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	2 cut(s)	365, 441
BclI	TGATCA	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	768
BfmI	CTRYAG	1 cut(s)	350
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme1390I	CCNGG	2 cut(s)	365, 441
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	1 cut(s)	810
BmrFI	CCNGG	2 cut(s)	365, 441
BmsI	GCATC	1 cut(s)	699
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpuEI	CTTGAG	1 cut(s)	449
BsaBI	GATNNNNATC	1 cut(s)	152
BsaHI	GRCGYC	2 cut(s)	603, 815
BsaJI	CCNNGG	2 cut(s)	358, 440
BsaWI	WCCGGW	3 cut(s)	156, 546, 586
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 364, 370, 553
Bse118I	RCCGGY	3 cut(s)	449, 546, 586
Bse8I	GATNNNNATC	1 cut(s)	152
BseAI	TCCGGA	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	365, 441
BseDI	CCNNGG	2 cut(s)	358, 440
BseGI	GGATG	3 cut(s)	450, 518, 646
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	4 cut(s)	163, 364, 370, 553
BseMII	CTCAG	1 cut(s)	33
BsePI	GCGCGC	1 cut(s)	536
BseRI	GAGGAG	1 cut(s)	386
Bsh1236I	CGCG	2 cut(s)	538, 690
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	363
BshTI	ACCGGT	2 cut(s)	546, 586
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	349, 383
BsiSI	CCGG	6 cut(s)	157, 390, 450, 547, 587, 812
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	4 cut(s)	163, 364, 370, 553
BsmAI	GTCTC	1 cut(s)	768
BsmBI	CGTCTC	1 cut(s)	768
BsmFI	GGGAC	1 cut(s)	712
BsnI	GGCC	1 cut(s)	363
Bsp1286I	GDGCHC	2 cut(s)	349, 383
Bsp13I	TCCGGA	1 cut(s)	156
Bsp143I	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
BspACI	CCGC	7 cut(s)	190, 221, 336, 387, 566, 660, 722
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	1 cut(s)	32
BspEI	TCCGGA	1 cut(s)	156
BspFNI	CGCG	2 cut(s)	538, 690
BspLI	GGNNCC	1 cut(s)	810
BspMAI	CTGCAG	1 cut(s)	354
BspPI	GGATC	3 cut(s)	23, 695, 844
BspQI	GCTCTTC	2 cut(s)	337, 371
BsrBI	CCGCTC	1 cut(s)	660
BsrFI	RCCGGY	3 cut(s)	449, 546, 586
BssAI	RCCGGY	3 cut(s)	449, 546, 586
BssECI	CCNNGG	2 cut(s)	358, 440
BssHII	GCGCGC	1 cut(s)	536
BssMI	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
BssNI	GRCGYC	2 cut(s)	603, 815
Bst2UI	CCWGG	2 cut(s)	365, 441
Bst4CI	ACNGT	5 cut(s)	95, 176, 328, 434, 858
Bst6I	CTCTTC	3 cut(s)	337, 371, 648
BstACI	GRCGYC	2 cut(s)	603, 815
BstC8I	GCNNGC	2 cut(s)	538, 692
BstDEI	CTNAG	1 cut(s)	19
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	3 cut(s)	450, 518, 646
BstFNI	CGCG	2 cut(s)	538, 690
BstHHI	GCGC	2 cut(s)	538, 540
BstKTI	GATC	6 cut(s)	18, 214, 277, 420, 703, 852
BstMAI	GTCTC	1 cut(s)	768
BstMBI	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	3 cut(s)	691, 826, 835
BstNI	CCWGG	2 cut(s)	365, 441
BstSCI	CCNGG	2 cut(s)	363, 439
BstSFI	CTRYAG	1 cut(s)	350
BstUI	CGCG	2 cut(s)	538, 690
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	363
BtsCI	GGATG	3 cut(s)	450, 518, 646
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	2 cut(s)	538, 692
CfoI	GCGC	2 cut(s)	538, 540
Cfr10I	RCCGGY	3 cut(s)	449, 546, 586
Cfr13I	GGNCC	1 cut(s)	412
CseI	GACGC	2 cut(s)	53, 804
CspAI	ACCGGT	2 cut(s)	546, 586
CviAII	CATG	1 cut(s)	625
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	6 cut(s)	17, 213, 276, 419, 702, 851
DpnII	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
DraIII	CACNNNGTG	1 cut(s)	41
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
Eam1104I	CTCTTC	3 cut(s)	337, 371, 648
EarI	CTCTTC	3 cut(s)	337, 371, 648
EciI	GGCGGA	1 cut(s)	205
Ecl136II	GAGCTC	2 cut(s)	347, 381
Eco24I	GRGCYC	2 cut(s)	349, 383
Eco47I	GGWCC	1 cut(s)	412
Eco53kI	GAGCTC	2 cut(s)	347, 381
Eco57I	CTGAAG	2 cut(s)	89, 635
EcoICRI	GAGCTC	2 cut(s)	347, 381
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	363, 439
EcoT38I	GRGCYC	2 cut(s)	349, 383
Esp3I	CGTCTC	1 cut(s)	768
FaeI	CATG	1 cut(s)	628
FaiI	YATR	7 cut(s)	98, 422, 437, 515, 542, 578, 626
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	1 cut(s)	624
FbaI	TGATCA	1 cut(s)	417
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	3 cut(s)	457, 505, 653
FriOI	GRGCYC	2 cut(s)	349, 383
Fsp4HI	GCNGC	1 cut(s)	221
GlaI	GCGC	2 cut(s)	537, 539
GluI	GCNGC	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	6 cut(s)	157, 390, 450, 547, 587, 812
HgaI	GACGC	2 cut(s)	53, 804
HhaI	GCGC	2 cut(s)	538, 540
Hin1I	GRCGYC	2 cut(s)	603, 815
Hin1II	CATG	1 cut(s)	628
Hin6I	GCGC	2 cut(s)	536, 538
HinP1I	GCGC	2 cut(s)	536, 538
HincII	GTYRAC	2 cut(s)	259, 331
HindII	GTYRAC	2 cut(s)	259, 331
HinfI	GANTC	3 cut(s)	148, 393, 479
HpaII	CCGG	6 cut(s)	157, 390, 450, 547, 587, 812
HphI	GGTGA	3 cut(s)	54, 601, 711
Hpy166II	GTNNAC	4 cut(s)	91, 259, 331, 412
Hpy188I	TCNGA	8 cut(s)	147, 202, 235, 523, 647, 705, 849, 854
Hpy188III	TCNNGA	4 cut(s)	157, 466, 508, 607
Hpy8I	GTNNAC	4 cut(s)	91, 259, 331, 412
HpyAV	CCTTC	4 cut(s)	400, 554, 610, 723
HpyCH4III	ACNGT	5 cut(s)	95, 176, 328, 434, 858
HpyCH4IV	ACGT	3 cut(s)	246, 528, 603
HpyCH4V	TGCA	2 cut(s)	315, 352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	691, 826, 835
HpyF3I	CTNAG	1 cut(s)	19
HpySE526I	ACGT	3 cut(s)	246, 528, 603
Hsp92I	GRCGYC	2 cut(s)	603, 815
Hsp92II	CATG	1 cut(s)	628
HspAI	GCGC	2 cut(s)	536, 538
Kpn2I	TCCGGA	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
LguI	GCTCTTC	2 cut(s)	337, 371
LmnI	GCTCC	2 cut(s)	386, 814
LweI	GCATC	1 cut(s)	699
MaeII	ACGT	3 cut(s)	246, 528, 603
MaeIII	GTNAC	2 cut(s)	41, 319
MalI	GATC	6 cut(s)	17, 213, 276, 419, 702, 851
MbiI	CCGCTC	1 cut(s)	660
MboI	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
MboII	GAAGA	7 cut(s)	172, 351, 354, 388, 474, 569, 665
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	2 cut(s)	349, 383
MluCI	AATT	2 cut(s)	303, 458
MmeI	TCCRAC	4 cut(s)	180, 625, 728, 877
MroI	TCCGGA	1 cut(s)	156
MroXI	GAANNNNTTC	1 cut(s)	58
MseI	TTAA	2 cut(s)	137, 582
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	6 cut(s)	157, 390, 450, 547, 587, 812
MspR9I	CCNGG	2 cut(s)	365, 441
MvaI	CCWGG	2 cut(s)	365, 441
MvnI	CGCG	2 cut(s)	538, 690
MwoI	GCNNNNNNNGC	3 cut(s)	691, 826, 835
NdeII	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
NlaIII	CATG	1 cut(s)	628
NlaIV	GGNNCC	1 cut(s)	810
NmeAIII	GCCGAG	2 cut(s)	339, 785
NmuCI	GTSAC	2 cut(s)	41, 319
PauI	GCGCGC	1 cut(s)	536
PciSI	GCTCTTC	2 cut(s)	337, 371
PcsI	WCGNNNNNNNCGW	9 cut(s)	252, 258, 267, 366, 746, 749, 758, 812, 830
PdmI	GAANNNNTTC	1 cut(s)	58
PfeI	GAWTC	3 cut(s)	148, 393, 479
PinAI	ACCGGT	2 cut(s)	546, 586
PkrI	GCNGC	1 cut(s)	222
Ple19I	CGATCG	1 cut(s)	277
Psp124BI	GAGCTC	2 cut(s)	349, 383
Psp1406I	AACGTT	1 cut(s)	528
Psp6I	CCWGG	2 cut(s)	363, 439
PspGI	CCWGG	2 cut(s)	363, 439
PspN4I	GGNNCC	1 cut(s)	810
PspPI	GGNCC	1 cut(s)	412
PstI	CTGCAG	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	15
PteI	GCGCGC	1 cut(s)	536
PvuI	CGATCG	1 cut(s)	277
SacI	GAGCTC	2 cut(s)	349, 383
SalI	GTCGAC	1 cut(s)	257
SapI	GCTCTTC	2 cut(s)	337, 371
SaqAI	TTAA	2 cut(s)	137, 582
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
Sau96I	GGNCC	1 cut(s)	412
ScrFI	CCNGG	2 cut(s)	365, 441
SduI	GDGCHC	2 cut(s)	349, 383
SfaNI	GCATC	1 cut(s)	699
SfcI	CTRYAG	1 cut(s)	350
SgrDI	CGTCGACG	1 cut(s)	257
SinI	GGWCC	1 cut(s)	412
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	2 cut(s)	303, 458
SsiI	CCGC	7 cut(s)	190, 221, 336, 387, 566, 660, 722
SstI	GAGCTC	2 cut(s)	349, 383
StyD4I	CCNGG	2 cut(s)	363, 439
TaaI	ACNGT	5 cut(s)	95, 176, 328, 434, 858
TaiI	ACGT	3 cut(s)	249, 531, 606
TaqI	TCGA	5 cut(s)	210, 258, 273, 288, 396
TasI	AATT	2 cut(s)	303, 458
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	3 cut(s)	148, 393, 479
Tru1I	TTAA	2 cut(s)	137, 582
Tru9I	TTAA	2 cut(s)	137, 582
TscAI	CASTG	1 cut(s)	98
TseFI	GTSAC	2 cut(s)	41, 319
Tsp45I	GTSAC	2 cut(s)	41, 319
TspDTI	ATGAA	3 cut(s)	565, 686, 705
TspGWI	ACGGA	4 cut(s)	29, 440, 726, 756
TspRI	CASTG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	412
XagI	CCTNNNNNAGG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	58
ZraI	GACGTC	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.