pycom16g08210

negative regulation of protein maturation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012297
Physical Location & Seq
Forward (+)
5417438 .. 5418781
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 786 bp
ATGTTGGGAGGCAACAGTGGTAACCCCATGCTTCCTGTTTTCGTGGATGAAAATCGTTACCCATATCCGACAAATGCTTCAAGTCAACTACAGCTGTTTGGAAATGTACAAGCTGGATGTAACGTTGATCCTGTAAATTATTTTGGAACTGAGCATATTACTCCCATGCTTCGGCCTAATAAACGAAACAGGGAAATGGAAGATATCTCAAGACAGCAGAAGCTTCAGATTTCTTTGAACTATAATGTCTGTCCGGATGAAGTTGATCATTCAGCTAGCATTCCAAACCCAAATGCTGTATCAACGGGGTTAAGGCTATCATATGATGACGATGAGCGCAACTCATCAGTTACTTCGGCTAGTGGAAGTATGACAGTAGCACCTTCGATGATCCTATCCCTAGGTGACAATATTAGGACTGAGCTGGATCGACAGAAGGAAGAGTTTGATCAATACATCAAAATTCAGGAGGAACACTTGGCAAAGGGAGTTAGGGACATGAAGCAGAGACATATGTCTTCTTTCCTTGCTGCCATAGAGAAAGGTGTCAGCAAAAAGATGATCGAGAAAGACTTGGAAATTGAGAACATGAACCGGAAGAATCGAGAATTGGTGGATAGAATAAAACAGGTGGCTGTGGAAGGCCAAAACTGGCACTACAGAGCGAAGTACAATGAGTCCGTGGTAAATGTCCTGAAGAGCAACTTACAGCAAGCAATTTCACAAGGTGCCGATCAAGGGAAGGAAGGATTTGGAGACAGCGAAGTTGACGATGCTGCCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001817 GO:0001959 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004842 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007166 GO:0007249 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010466 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010803 GO:0010939 GO:0010941 GO:0010951 GO:0010955 GO:0012501 GO:0016567 GO:0016579 GO:0016740 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023056 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0031325 GO:0031347 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0033209 GO:0034097 GO:0034121 GO:0034612 GO:0035556 GO:0036211 GO:0038061 GO:0039531 GO:0039535 GO:0042221 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043122 GO:0043123 GO:0043154 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043281 GO:0043412 GO:0043900 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045861 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050688 GO:0050727 GO:0050776 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060544 GO:0060546 GO:0060547 GO:0060548 GO:0060759 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070013 GO:0070424 GO:0070613 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071356 GO:0071704 GO:0080090 GO:0080134 GO:0097340 GO:0097341 GO:0098772 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903317 GO:1903318 GO:1903320 GO:1903322 GO:1990001 GO:2000116 GO:2000117
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

262

Amino Acids

29.31

Weight (kDa)

5.25

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10650 AT1G10650
fragaria_vesca FvH4_4g32940
malus_domestica MD13G1095100.v1.1 MD16G1096200.v1.1
prunus_persica Prupe.1G250200_v2.0.a1
pyrus_communis pycom13g08290 pycom16g08210
rosa_chinensis RchiOBHm_Chr4g0441971
rosa_laevigata RLG00000006054
rosa_multiflora Rmu_sc0002501.1_g000024 Rmu_sc0011990.1_g000003
rosa_roxburghii Rroxscaffold_5G00382840
rosa_rugosa Rorug04G0337400
rosa_samantha Rh4AG389400 Rh4BG402800 Rh4CG418000 Rh4DG395900
rosa_wichuraiana Rw4G033620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 728
AccIII TCCGGA 1 cut(s) 253
AclI AACGTT 1 cut(s) 123
AclWI GGATC 3 cut(s) 122, 385, 435
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 2 cut(s) 209, 716
AdeI CACNNNGTG 1 cut(s) 728
AfaI GTAC 2 cut(s) 108, 671
AfiI CCNNNNNNNGG 2 cut(s) 171, 738
AgsI TTSAA 2 cut(s) 81, 238
AjuI GAANNNNNNNTTGG 2 cut(s) 593, 625
AluBI AGCT 5 cut(s) 94, 113, 223, 275, 424
AluI AGCT 5 cut(s) 94, 113, 223, 275, 424
Alw26I GTCTC 2 cut(s) 502, 750
AlwI GGATC 3 cut(s) 122, 385, 435
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 2 cut(s) 173, 643
ApeKI GCWGC 2 cut(s) 530, 776
ApoI RAATTY 1 cut(s) 462
AspA2I CCTAGG 1 cut(s) 400
AspLEI GCGC 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 416
AsuNHI GCTAGC 1 cut(s) 275
AvrII CCTAGG 1 cut(s) 400
BanI GGYRCC 1 cut(s) 728
BbsI GAAGAC 1 cut(s) 510
BbvI GCAGC 2 cut(s) 517, 763
BclI TGATCA 2 cut(s) 265, 448
BcoDI GTCTC 2 cut(s) 502, 750
BfaI CTAG 3 cut(s) 276, 360, 401
BfmI CTRYAG 2 cut(s) 89, 658
BisI GCNGC 2 cut(s) 531, 777
BlnI CCTAGG 1 cut(s) 400
BlsI GCNGC 2 cut(s) 532, 778
BmiI GGNNCC 1 cut(s) 730
BmsI GCATC 1 cut(s) 763
BmtI GCTAGC 1 cut(s) 279
BoxI GACNNNNGTC 1 cut(s) 514
BpiI GAAGAC 1 cut(s) 510
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpuEI CTTGAG 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 400, 681
BsaWI WCCGGW 2 cut(s) 253, 594
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 738
Bse1I ACTGG 1 cut(s) 656
Bse8I GATNNNNATC 1 cut(s) 51
BseAI TCCGGA 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 400, 681
BseGI GGATG 3 cut(s) 52, 122, 262
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 2 cut(s) 171, 738
BseMII CTCAG 2 cut(s) 141, 411
BseNI ACTGG 1 cut(s) 656
BseXI GCAGC 2 cut(s) 517, 763
BshFI GGCC 2 cut(s) 175, 645
BshNI GGYRCC 1 cut(s) 728
BsiSI CCGG 2 cut(s) 254, 595
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 2 cut(s) 171, 738
BsmAI GTCTC 2 cut(s) 502, 750
BsmFI GGGAC 1 cut(s) 509
BsmI GAATGC 1 cut(s) 279
BsnI GGCC 2 cut(s) 175, 645
Bsp13I TCCGGA 1 cut(s) 253
Bsp1407I TGTACA 1 cut(s) 106
Bsp143I GATC 7 cut(s) 127, 265, 390, 427, 448, 561, 733
BspANI GGCC 2 cut(s) 175, 645
BspCNI CTCAG 2 cut(s) 142, 412
BspEI TCCGGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 730
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 3 cut(s) 122, 385, 435
BspQI GCTCTTC 1 cut(s) 692
BspT107I GGYRCC 1 cut(s) 728
BsrGI TGTACA 1 cut(s) 106
BsrI ACTGG 1 cut(s) 656
BssECI CCNNGG 2 cut(s) 400, 681
BssMI GATC 7 cut(s) 127, 265, 390, 427, 448, 561, 733
BssT1I CCWWGG 1 cut(s) 400
Bst4CI ACNGT 2 cut(s) 17, 376
Bst6I CTCTTC 2 cut(s) 435, 692
BstAUI TGTACA 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 277, 714
BstDEI CTNAG 2 cut(s) 150, 420
BstDSI CCRYGG 1 cut(s) 681
BstEII GGTNACC 1 cut(s) 20
BstF5I GGATG 3 cut(s) 52, 122, 262
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 7 cut(s) 130, 268, 393, 430, 451, 564, 736
BstMAI GTCTC 2 cut(s) 502, 750
BstMBI GATC 7 cut(s) 127, 265, 390, 427, 448, 561, 733
BstPAI GACNNNNGTC 1 cut(s) 514
BstPI GGTNACC 1 cut(s) 20
BstSFI CTRYAG 2 cut(s) 89, 658
BstV1I GCAGC 2 cut(s) 517, 763
BstV2I GAAGAC 1 cut(s) 510
BsuRI GGCC 2 cut(s) 175, 645
BtgI CCRYGG 1 cut(s) 681
BtsCI GGATG 3 cut(s) 52, 122, 262
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 277, 714
CfoI GCGC 1 cut(s) 339
Csp6I GTAC 2 cut(s) 107, 670
CviAII CATG 4 cut(s) 28, 166, 499, 589
CviQI GTAC 2 cut(s) 107, 670
DdeI CTNAG 2 cut(s) 150, 420
DpnI GATC 7 cut(s) 129, 267, 392, 429, 450, 563, 735
DpnII GATC 7 cut(s) 127, 265, 390, 427, 448, 561, 733
DraIII CACNNNGTG 1 cut(s) 728
Eam1104I CTCTTC 2 cut(s) 435, 692
EarI CTCTTC 2 cut(s) 435, 692
Eco130I CCWWGG 1 cut(s) 400
Eco32I GATATC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 209, 716
Eco91I GGTNACC 1 cut(s) 20
EcoO65I GGTNACC 1 cut(s) 20
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 4 cut(s) 31, 169, 502, 592
FalI AAGNNNNNCTT 2 cut(s) 689, 721
FaqI GGGAC 1 cut(s) 509
FatI CATG 4 cut(s) 27, 165, 498, 588
FauNDI CATATG 2 cut(s) 322, 513
FbaI TGATCA 2 cut(s) 265, 448
Fnu4HI GCNGC 2 cut(s) 531, 777
FokI GGATG 3 cut(s) 59, 129, 269
Fsp4HI GCNGC 2 cut(s) 531, 777
FspBI CTAG 3 cut(s) 276, 360, 401
GlaI GCGC 1 cut(s) 338
GluI GCNGC 2 cut(s) 531, 777
HaeIII GGCC 2 cut(s) 175, 645
HapII CCGG 2 cut(s) 254, 595
HhaI GCGC 1 cut(s) 339
Hin1II CATG 4 cut(s) 31, 169, 502, 592
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HincII GTYRAC 2 cut(s) 86, 769
HindII GTYRAC 2 cut(s) 86, 769
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 2 cut(s) 601, 677
HpaII CCGG 2 cut(s) 254, 595
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 2 cut(s) 86, 769
Hpy188I TCNGA 2 cut(s) 69, 228
Hpy188III TCNNGA 6 cut(s) 210, 254, 467, 565, 605, 694
Hpy8I GTNNAC 2 cut(s) 86, 769
HpyAV CCTTC 5 cut(s) 393, 430, 635, 736, 740
HpyCH4III ACNGT 2 cut(s) 17, 376
HpyCH4IV ACGT 1 cut(s) 123
HpyF3I CTNAG 2 cut(s) 150, 420
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 4 cut(s) 31, 169, 502, 592
HspAI GCGC 1 cut(s) 337
Kpn2I TCCGGA 1 cut(s) 253
Ksp22I TGATCA 2 cut(s) 265, 448
Kzo9I GATC 7 cut(s) 127, 265, 390, 427, 448, 561, 733
LguI GCTCTTC 1 cut(s) 692
Lsp1109I GCAGC 2 cut(s) 517, 763
LweI GCATC 1 cut(s) 763
MaeI CTAG 3 cut(s) 276, 360, 401
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 5 cut(s) 20, 56, 119, 349, 404
MalI GATC 7 cut(s) 129, 267, 392, 429, 450, 563, 735
MboI GATC 7 cut(s) 127, 265, 390, 427, 448, 561, 733
MboII GAAGA 5 cut(s) 212, 452, 510, 610, 709
MluCI AATT 5 cut(s) 136, 462, 579, 608, 717
MlyI GAGTC 1 cut(s) 686
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 1 cut(s) 463
MroI TCCGGA 1 cut(s) 253
MseI TTAA 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 2 cut(s) 254, 595
Mva1269I GAATGC 1 cut(s) 279
NdeI CATATG 2 cut(s) 322, 513
NdeII GATC 7 cut(s) 127, 265, 390, 427, 448, 561, 733
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 4 cut(s) 31, 169, 502, 592
NlaIV GGNNCC 1 cut(s) 730
NmuCI GTSAC 1 cut(s) 404
PciSI GCTCTTC 1 cut(s) 692
PctI GAATGC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 601
PkrI GCNGC 2 cut(s) 532, 778
PleI GAGTC 1 cut(s) 685
PpsI GAGTC 1 cut(s) 685
PshAI GACNNNNGTC 1 cut(s) 514
Psp1406I AACGTT 1 cut(s) 123
PspEI GGTNACC 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 730
PvuII CAGCTG 1 cut(s) 94
RsaI GTAC 2 cut(s) 108, 671
RsaNI GTAC 2 cut(s) 107, 670
SapI GCTCTTC 1 cut(s) 692
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 2 cut(s) 531, 777
Sau3AI GATC 7 cut(s) 127, 265, 390, 427, 448, 561, 733
SchI GAGTC 1 cut(s) 686
SfaNI GCATC 1 cut(s) 763
SfcI CTRYAG 2 cut(s) 89, 658
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 5 cut(s) 136, 462, 579, 608, 717
SspI AATATT 1 cut(s) 412
SspMI CTAG 3 cut(s) 276, 360, 401
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 2 cut(s) 17, 376
TaiI ACGT 1 cut(s) 126
TaqI TCGA 4 cut(s) 386, 430, 564, 604
TasI AATT 5 cut(s) 136, 462, 579, 608, 717
TatI WGTACW 2 cut(s) 106, 669
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 2 cut(s) 530, 776
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 4 cut(s) 63, 273, 515, 605
TspGWI ACGGA 1 cut(s) 670
TspRI CASTG 1 cut(s) 22
XapI RAATTY 1 cut(s) 462
XmaJI CCTAGG 1 cut(s) 400
XspI CTAG 3 cut(s) 276, 360, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.