pycom16g08770

Glutamate--glyoxylate aminotransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
5862688 .. 5866776
4089 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1446 bp
ATGCCCCTTAAGGCATTGGACTATGAGTCACTGAATGAGAACGTGAAGAAGGTTCAGTACGCTGTTAGAGGCGAGCTGTATCTTCGAGCTTCTGAGCTTCAGAAGGAAGGAAAGAAGATTGTTTTCACAAATGTTGGGAATCCTCATGCTCTAGGACAGAAGCCACTGACTTTCCCTCGCCAGGTGGTTGCTTTATGCCAAGCTCCATTCCTGTTAGATGACCCTAATGTAGGGTTGCTCTTTCCTGCTGATGCAATTTCAAGAGCTAAACATTATCTTTCAATTACTTCGGGTGGTCTAGGTGCTTATAGTGATTCCCGAGGTATTCCAGGGGTTAGGAAGGAAGTGGCAGAGTTCATCGAGAAACGTGATGGATATCCAAGTGACCCGGAGCTCATATATCTCACCGATGGTGCCAGCAAGGGTGTGATGCAGATCTTGAATGCTATCATCCGTGGTGAAGGGGATGGGATTCTGGTTCCAGTCCCACAATACCCACTCTATTCGGCTGCGATATCTCTGTTTGGCGGTTCTCTTGTTCCTTATTACCTAGAGGAAACAGCAAATTGGGGTCTTGATGTTAATAATCTTCGCCAGTCAGTTGCACAGGCTCGTGCAAATGGAATCACTGTAAGAGCAATGGTGATTATAAACCCTGGAAATCCTACTGGTCAGTGTCTTAGTGAAGCTAATTTAAGAGAAATATTGAACTTCTGTTACCATGAAAGCCTAGTCTTGCTTGGGGATGAAGTTTATCAGCAAAATATATACCAGGATGAGCGCCCCTTTATTAGTTCTAGAAAGGTATTGATGGGTATGGGGCTACCTATAAGCAAGGAAGTCCAGCTTGTTTCTTTCCACACCGTCTCCAAAGGATACTGGGGTGAATGTGGACAGCGGGGTGGATACTTTGAGATGACAAACATCCCTCCAAAGACAGTTGACGAGATATATAAGATTGCATCAATAGCACTCAGTCCAAATGTTCCTGCACAAATATTTATGGGGCTGATGGTCAACCCTCCCAAACCTGGAGATATTTCATATGAGCAGTTTATTAGGGAAAGCAAAGGGATCCTTGAATCTCTGAGGAGAAGAGCCAGGATAATGACTGATGGATTTAACAGCTGCAGAAATGTTGTTTGTAATTTCACGGAAGGTGCAATGTATTCATTCCCACAAATACGCTTGCCACCAAGAGCGATAGAGGCTGCTCAACAGGCTGGAAAAGTTGCCGATGTTTTCTACTGTCTCAAGCTCTTGGAAGCCACTGGCATTTCCACCGTCCCTGGATCAGGGTTCGGACAGAAAGAAGGGGTGTTCCACTTGAGGACAACCATCTTACCGGCTGAGGAAGACATGCCAGCCATCATGGATAGCTTCAAGAAGTTCAACAACGAGTTCATGGATCAATACGAAGATCAGAGGGGATATTCGAGGATGTAA

Protein Analysis

482

Amino Acids

53.34

Weight (kDa)

6.08

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 88 - 449 7.2e-35 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 650
AccB1I GGYRCC 1 cut(s) 413
AciI CCGC 2 cut(s) 528, 898
AclWI GGATC 4 cut(s) 1069, 1082, 1300, 1416
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 4 cut(s) 181, 230, 1031, 1295
AflII CTTAAG 1 cut(s) 8
AgsI TTSAA 7 cut(s) 261, 282, 442, 709, 1082, 1384, 1393
AhdI GACNNNNNGTC 1 cut(s) 25
AjnI CCWGG 7 cut(s) 180, 328, 655, 771, 1030, 1100, 1288
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 2 cut(s) 871, 1256
AlwI GGATC 4 cut(s) 1069, 1082, 1300, 1416
Ama87I CYCGRG 1 cut(s) 318
ApeKI GCWGC 3 cut(s) 509, 1128, 1211
AspLEI GCGC 1 cut(s) 783
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 4 cut(s) 397, 470, 655, 896
AvaI CYCGRG 1 cut(s) 318
BaeI ACNNNNGTAYC 2 cut(s) 868, 901
BamHI GGATCC 1 cut(s) 1074
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 396
BarI GAAGNNNNNNTAC 2 cut(s) 41, 73
BauI CACGAG 1 cut(s) 612
BbsI GAAGAC 1 cut(s) 1362
Bbv12I GWGCWC 1 cut(s) 396
BbvCI CCTCAGC 1 cut(s) 1350
BbvI GCAGC 3 cut(s) 496, 1115, 1198
BccI CCATC 8 cut(s) 365, 404, 461, 805, 1006, 1109, 1346, 1376
BciT130I CCWGG 7 cut(s) 182, 330, 657, 773, 1032, 1102, 1290
BciVI GTATCC 2 cut(s) 869, 899
BcnI CCSGG 1 cut(s) 389
BcoDI GTCTC 2 cut(s) 871, 1256
BfaI CTAG 5 cut(s) 152, 299, 551, 731, 798
BfmI CTRYAG 1 cut(s) 1129
BfoI RGCGCY 1 cut(s) 784
BfrI CTTAAG 1 cut(s) 8
BfuI GTATCC 2 cut(s) 869, 899
BglII AGATCT 1 cut(s) 435
BisI GCNGC 3 cut(s) 510, 1129, 1212
BlsI GCNGC 3 cut(s) 511, 1130, 1213
Bme1390I CCNGG 8 cut(s) 182, 330, 389, 657, 773, 1032, 1102, 1290
BmeRI GACNNNNNGTC 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 318
BmiI GGNNCC 3 cut(s) 415, 480, 1076
BmrFI CCNGG 8 cut(s) 182, 330, 389, 657, 773, 1032, 1102, 1290
BmrI ACTGGG 1 cut(s) 889
BmsI GCATC 3 cut(s) 241, 420, 971
BmuI ACTGGG 1 cut(s) 889
BpiI GAAGAC 1 cut(s) 1362
BpmI CTGGAG 1 cut(s) 1053
Bpu10I CCTNAGC 1 cut(s) 1350
BpuEI CTTGAG 2 cut(s) 1238, 1348
BpuMI CCSGG 1 cut(s) 389
BsaBI GATNNNNATC 2 cut(s) 375, 434
BsaJI CCNNGG 5 cut(s) 319, 329, 454, 655, 1288
BsaXI ACNNNNNCTCC 2 cut(s) 851, 881
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 230, 1031, 1295
Bse118I RCCGGY 1 cut(s) 1345
Bse1I ACTGG 5 cut(s) 482, 595, 673, 884, 1276
Bse3DI GCAATG 2 cut(s) 645, 1170
Bse8I GATNNNNATC 2 cut(s) 375, 434
BseBI CCWGG 7 cut(s) 182, 330, 657, 773, 1032, 1102, 1290
BseDI CCNNGG 5 cut(s) 319, 329, 454, 655, 1288
BseGI GGATG 6 cut(s) 450, 472, 751, 781, 924, 1446
BseJI GATNNNNATC 2 cut(s) 375, 434
BseLI CCNNNNNNNGG 4 cut(s) 181, 230, 1031, 1295
BseMI GCAATG 2 cut(s) 645, 1170
BseMII CTCAG 4 cut(s) 84, 988, 1079, 1341
BseNI ACTGG 5 cut(s) 482, 595, 673, 884, 1276
BseRI GAGGAG 1 cut(s) 1105
BseXI GCAGC 3 cut(s) 496, 1115, 1198
BsgI GTGCAG 1 cut(s) 975
BshNI GGYRCC 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 396
BsiHKCI CYCGRG 1 cut(s) 318
BsiSI CCGG 2 cut(s) 389, 1346
BslFI GGGAC 2 cut(s) 470, 1271
BslI CCNNNNNNNGG 4 cut(s) 181, 230, 1031, 1295
BsmAI GTCTC 2 cut(s) 871, 1256
BsmBI CGTCTC 1 cut(s) 871
BsmFI GGGAC 2 cut(s) 470, 1271
BsmI GAATGC 1 cut(s) 448
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
BspACI CCGC 2 cut(s) 528, 898
BspCNI CTCAG 4 cut(s) 85, 987, 1080, 1342
BspLI GGNNCC 3 cut(s) 415, 480, 1076
BspMAI CTGCAG 1 cut(s) 1133
BspPI GGATC 4 cut(s) 1069, 1082, 1300, 1416
BspQI GCTCTTC 1 cut(s) 1090
BspT107I GGYRCC 1 cut(s) 413
BspTI CTTAAG 1 cut(s) 8
BsrDI GCAATG 2 cut(s) 645, 1170
BsrFI RCCGGY 1 cut(s) 1345
BsrI ACTGG 5 cut(s) 482, 595, 673, 884, 1276
BssAI RCCGGY 1 cut(s) 1345
BssECI CCNNGG 5 cut(s) 319, 329, 454, 655, 1288
BssMI GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
BssSI CACGAG 1 cut(s) 612
Bst2BI CACGAG 1 cut(s) 612
Bst2UI CCWGG 7 cut(s) 182, 330, 657, 773, 1032, 1102, 1290
Bst4CI ACNGT 5 cut(s) 631, 865, 940, 1250, 1285
Bst6I CTCTTC 1 cut(s) 1090
BstAFI CTTAAG 1 cut(s) 8
BstC8I GCNNGC 4 cut(s) 74, 418, 1190, 1365
BstDEI CTNAG 5 cut(s) 93, 680, 974, 1088, 1350
BstDSI CCRYGG 1 cut(s) 454
BstENI CCTNNNNNAGG 2 cut(s) 228, 1293
BstF5I GGATG 6 cut(s) 450, 472, 751, 781, 924, 1446
BstH2I RGCGCY 1 cut(s) 784
BstHHI GCGC 1 cut(s) 783
BstKTI GATC 5 cut(s) 438, 1077, 1295, 1411, 1423
BstMAI GTCTC 2 cut(s) 871, 1256
BstMBI GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
BstMWI GCNNNNNNNGC 3 cut(s) 968, 1208, 1220
BstNI CCWGG 7 cut(s) 182, 330, 657, 773, 1032, 1102, 1290
BstNSI RCATGY 1 cut(s) 1363
BstSCI CCNGG 8 cut(s) 180, 328, 387, 655, 771, 1030, 1100, 1288
BstSFI CTRYAG 1 cut(s) 1129
BstV1I GCAGC 3 cut(s) 496, 1115, 1198
BstV2I GAAGAC 1 cut(s) 1362
BstX2I RGATCY 2 cut(s) 435, 1074
BstYI RGATCY 2 cut(s) 435, 1074
BsuI GTATCC 2 cut(s) 869, 899
BtgI CCRYGG 1 cut(s) 454
BtsCI GGATG 6 cut(s) 450, 472, 751, 781, 924, 1446
BtsIMutI CAGTG 5 cut(s) 29, 164, 627, 680, 1269
Cac8I GCNNGC 4 cut(s) 74, 418, 1190, 1365
CfoI GCGC 1 cut(s) 783
Cfr10I RCCGGY 1 cut(s) 1345
Csp6I GTAC 1 cut(s) 58
CviAII CATG 5 cut(s) 146, 722, 1360, 1372, 1405
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 5 cut(s) 93, 680, 974, 1088, 1350
DpnI GATC 5 cut(s) 437, 1076, 1294, 1410, 1422
DpnII GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
DriI GACNNNNNGTC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 1090
Eam1105I GACNNNNNGTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 1090
Ecl136II GAGCTC 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 396
Eco32I GATATC 2 cut(s) 377, 516
Eco53kI GAGCTC 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 394
EcoNI CCTNNNNNAGG 2 cut(s) 228, 1293
EcoRII CCWGG 7 cut(s) 180, 328, 655, 771, 1030, 1100, 1288
EcoRV GATATC 2 cut(s) 377, 516
EcoT38I GRGCYC 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 871
FaeI CATG 5 cut(s) 149, 725, 1363, 1375, 1408
FalI AAGNNNNNCTT 4 cut(s) 831, 863, 1062, 1094
FaqI GGGAC 2 cut(s) 470, 1271
FatI CATG 5 cut(s) 145, 721, 1359, 1371, 1404
FauI CCCGC 1 cut(s) 891
FauNDI CATATG 1 cut(s) 1045
Fnu4HI GCNGC 3 cut(s) 510, 1129, 1212
FokI GGATG 5 cut(s) 437, 479, 758, 788, 911
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 3 cut(s) 510, 1129, 1212
FspBI CTAG 5 cut(s) 152, 299, 551, 731, 798
GlaI GCGC 1 cut(s) 782
GluI GCNGC 3 cut(s) 510, 1129, 1212
GsuI CTGGAG 1 cut(s) 1053
HaeII RGCGCY 1 cut(s) 784
HapII CCGG 2 cut(s) 389, 1346
HhaI GCGC 1 cut(s) 783
Hin1II CATG 5 cut(s) 149, 725, 1363, 1375, 1408
Hin6I GCGC 1 cut(s) 781
HinP1I GCGC 1 cut(s) 781
HincII GTYRAC 2 cut(s) 943, 1018
HindII GTYRAC 2 cut(s) 943, 1018
HinfI GANTC 6 cut(s) 26, 139, 314, 472, 624, 1082
HpaII CCGG 2 cut(s) 389, 1346
HphI GGTGA 4 cut(s) 397, 470, 655, 896
Hpy166II GTNNAC 3 cut(s) 893, 943, 1018
Hpy188I TCNGA 5 cut(s) 94, 102, 1089, 1304, 1425
Hpy188III TCNNGA 7 cut(s) 261, 318, 361, 439, 575, 798, 1384
Hpy8I GTNNAC 3 cut(s) 893, 943, 1018
HpyAV CCTTC 7 cut(s) 43, 97, 101, 334, 455, 1151, 1307
HpyCH4III ACNGT 5 cut(s) 631, 865, 940, 1250, 1285
HpyCH4IV ACGT 2 cut(s) 42, 367
HpyCH4V TGCA 8 cut(s) 254, 433, 605, 617, 962, 992, 1131, 1163
HpyF10VI GCNNNNNNNGC 3 cut(s) 968, 1208, 1220
HpyF3I CTNAG 5 cut(s) 93, 680, 974, 1088, 1350
HpySE526I ACGT 2 cut(s) 42, 367
Hsp92II CATG 5 cut(s) 149, 725, 1363, 1375, 1408
HspAI GCGC 1 cut(s) 781
Kzo9I GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
LguI GCTCTTC 1 cut(s) 1090
LmnI GCTCC 2 cut(s) 208, 391
Lsp1109I GCAGC 3 cut(s) 496, 1115, 1198
LweI GCATC 3 cut(s) 241, 420, 971
MaeI CTAG 5 cut(s) 152, 299, 551, 731, 798
MaeII ACGT 2 cut(s) 42, 367
MaeIII GTNAC 3 cut(s) 27, 383, 716
MalI GATC 5 cut(s) 437, 1076, 1294, 1410, 1422
MboI GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
MboII GAAGA 7 cut(s) 58, 74, 127, 581, 1107, 1367, 1430
MflI RGATCY 2 cut(s) 435, 1074
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 5 cut(s) 255, 282, 565, 691, 1147
MlyI GAGTC 1 cut(s) 35
MseI TTAA 4 cut(s) 9, 582, 695, 1122
MspA1I CMGCKG 2 cut(s) 898, 1128
MspCI CTTAAG 1 cut(s) 8
MspI CCGG 2 cut(s) 389, 1346
MspR9I CCNGG 8 cut(s) 182, 330, 389, 657, 773, 1032, 1102, 1290
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 7 cut(s) 182, 330, 657, 773, 1032, 1102, 1290
MwoI GCNNNNNNNGC 3 cut(s) 968, 1208, 1220
NciI CCSGG 1 cut(s) 389
NdeI CATATG 1 cut(s) 1045
NdeII GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
NlaIII CATG 5 cut(s) 149, 725, 1363, 1375, 1408
NlaIV GGNNCC 3 cut(s) 415, 480, 1076
NmuCI GTSAC 2 cut(s) 27, 383
NspI RCATGY 1 cut(s) 1363
PciSI GCTCTTC 1 cut(s) 1090
PctI GAATGC 1 cut(s) 448
PfeI GAWTC 5 cut(s) 139, 314, 472, 624, 1082
PkrI GCNGC 3 cut(s) 511, 1130, 1213
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PsiI TTATAA 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 396
Psp6I CCWGG 7 cut(s) 180, 328, 655, 771, 1030, 1100, 1288
PspGI CCWGG 7 cut(s) 180, 328, 655, 771, 1030, 1100, 1288
PspN4I GGNNCC 3 cut(s) 415, 480, 1076
PsrI GAACNNNNNNTAC 2 cut(s) 701, 733
PstI CTGCAG 1 cut(s) 1133
PsuI RGATCY 2 cut(s) 435, 1074
PvuII CAGCTG 1 cut(s) 1128
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SacI GAGCTC 1 cut(s) 396
SapI GCTCTTC 1 cut(s) 1090
SaqAI TTAA 4 cut(s) 9, 582, 695, 1122
SatI GCNGC 3 cut(s) 510, 1129, 1212
Sau3AI GATC 5 cut(s) 435, 1074, 1292, 1408, 1420
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 8 cut(s) 182, 330, 389, 657, 773, 1032, 1102, 1290
SduI GDGCHC 1 cut(s) 396
SfaNI GCATC 3 cut(s) 241, 420, 971
SfcI CTRYAG 1 cut(s) 1129
SmlI CTYRAG 3 cut(s) 8, 1253, 1327
SmoI CTYRAG 3 cut(s) 8, 1253, 1327
Sse9I AATT 5 cut(s) 255, 282, 565, 691, 1147
SsiI CCGC 2 cut(s) 528, 898
SspI AATATT 2 cut(s) 705, 999
SspMI CTAG 5 cut(s) 152, 299, 551, 731, 798
SstI GAGCTC 1 cut(s) 396
StyD4I CCNGG 8 cut(s) 180, 328, 387, 655, 771, 1030, 1100, 1288
TaaI ACNGT 5 cut(s) 631, 865, 940, 1250, 1285
TaiI ACGT 2 cut(s) 45, 370
TaqI TCGA 3 cut(s) 85, 360, 1436
TasI AATT 5 cut(s) 255, 282, 565, 691, 1147
TfiI GAWTC 5 cut(s) 139, 314, 472, 624, 1082
Tru1I TTAA 4 cut(s) 9, 582, 695, 1122
Tru9I TTAA 4 cut(s) 9, 582, 695, 1122
TscAI CASTG 5 cut(s) 36, 171, 634, 680, 1276
TseFI GTSAC 2 cut(s) 27, 383
TseI GCWGC 3 cut(s) 509, 1128, 1211
Tsp45I GTSAC 2 cut(s) 27, 383
TspDTI ATGAA 6 cut(s) 346, 738, 762, 1032, 1161, 1393
TspGWI ACGGA 2 cut(s) 443, 1169
TspRI CASTG 5 cut(s) 36, 171, 634, 680, 1276
Vha464I CTTAAG 1 cut(s) 8
XagI CCTNNNNNAGG 2 cut(s) 228, 1293
XbaI TCTAGA 1 cut(s) 797
XceI RCATGY 1 cut(s) 1363
XspI CTAG 5 cut(s) 152, 299, 551, 731, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.