Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009146

Physical Location & Seq

Genomic Coordinates Reverse (-)

6164982 .. 6166552

Gene Structure 1571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGATTTATTACCAGCCGTCTTACCAGGAGTCCTTGAGTGCTTTAGAAGCAGATATACAGCATGCAAATTCTCTAGCTGCTGCAATTCCGAGAGGCAAAGGCGGTGCCCGGTTTCAGATGAAATTGGTGTACAATCACTTGGCTCCCCTCTTTCTGTTTTTGTTGCAATGGTTTGATTGCTCATGCACTTGCCTGCTCCCAAGATACCTATATTTCTTCCATATACTTGTCTACAAGGTATACACAGATGGCAGGCCTAGCATTTCAACTCATGGAAGGAAGGCTTCTATAAGGGACTTCTATTCCGTTATCTTACCGTCTCTTCAGCGGCTGCACGGGGATTTGGGGGAGTTAGATGATTCTAAAGATGGACATCCTAGGGTTCCCAGCATGGAAAGCTCTGGAAAGAAGATGATTAAGGGAGATGGTAGCCTTGTCAATGCTGAAGGGGAGAGAGAAGAGGAGTGTGGGATATGTTTAGAGCCTTGCACCAAAGTGGTCTTGCCTAATTGCTGTCACGCAATGTGCATCAAATGCTACCGCAACTGGAGTAGAAAGTCGGAGTCTTGCCCATTTTGCCGTGGTAATATAAAGAGAGTTAAGTCTCAAGACTTATGGGTGCTCACTTGCAACGAAGATGTGGTAGACACCGAAACGGTTTCAAAAGAGGACTTGTTGCGTTTCTACCTCTATATCAACAGCCTGCCGAAAGATTACCCGGACGCCCTCTTCTTGGTGTACTACGAGTATTCTAATTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

255

Amino Acids

29.14

Weight (kDa)

6.65

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	153 - 200	9.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	155 - 194	3.8e-07	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13195 AT1G13195 AT1G24440 AT1G24440
fragaria_vesca	FvH4_4g24910 FvH4_4g24910
malus_domestica	MD13G1107900.v1.1 MD16G1107800.v1.1
prunus_persica	Prupe.1G238500_v2.0.a1 Prupe.1G238500_v2.0.a1
pyrus_communis	pycom13g09330 pycom16g09200
rosa_chinensis	RchiOBHm_Chr4g0431971
rosa_laevigata	RLG00000006870
rosa_multiflora	Rmu_sc0004965.1_g000015
rosa_roxburghii	Rroxscaffold_5G00373410
rosa_rugosa	Rorug04G0253800
rosa_samantha	Rh4AG310900 Rh4BG318000 Rh4CG333400 Rh4DG313000
rosa_wichuraiana	Rw4G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AccI	GTMKAC	3 cut(s)	231, 240, 645
AciI	CCGC	3 cut(s)	102, 328, 541
AcsI	RAATTY	1 cut(s)	67
AcuI	CTGAAG	2 cut(s)	308, 465
AcyI	GRCGYC	1 cut(s)	723
AfaI	GTAC	2 cut(s)	131, 740
AfiI	CCNNNNNNNGG	1 cut(s)	733
AgsI	TTSAA	2 cut(s)	267, 663
AjnI	CCWGG	1 cut(s)	24
AleI	CACNNNNGTG	1 cut(s)	494
AluBI	AGCT	2 cut(s)	77, 399
AluI	AGCT	2 cut(s)	77, 399
Alw21I	GWGCWC	1 cut(s)	624
Alw26I	GTCTC	2 cut(s)	324, 609
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	3 cut(s)	77, 80, 331
ApoI	RAATTY	1 cut(s)	67
AspA2I	CCTAGG	1 cut(s)	377
AsuC2I	CCSGG	2 cut(s)	109, 719
AvrII	CCTAGG	1 cut(s)	377
BaeGI	GKGCMC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	104
BarI	GAAGNNNNNNTAC	2 cut(s)	39, 71
Bbv12I	GWGCWC	1 cut(s)	624
BbvI	GCAGC	3 cut(s)	64, 67, 318
BccI	CCATC	3 cut(s)	242, 362, 419
BceAI	ACGGC	1 cut(s)	564
BciT130I	CCWGG	1 cut(s)	26
BcnI	CCSGG	2 cut(s)	109, 719
BcoDI	GTCTC	2 cut(s)	324, 609
BfaI	CTAG	3 cut(s)	74, 258, 378
BisI	GCNGC	4 cut(s)	78, 81, 329, 332
BlnI	CCTAGG	1 cut(s)	377
BlsI	GCNGC	4 cut(s)	79, 82, 330, 333
Bme1390I	CCNGG	3 cut(s)	26, 109, 719
BmiI	GGNNCC	3 cut(s)	106, 144, 384
BmrFI	CCNGG	3 cut(s)	26, 109, 719
BmsI	GCATC	1 cut(s)	537
BpmI	CTGGAG	1 cut(s)	568
BpuEI	CTTGAG	2 cut(s)	55, 591
BpuMI	CCSGG	2 cut(s)	109, 719
BsaBI	GATNNNNATC	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	723
BsaJI	CCNNGG	2 cut(s)	377, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	733
Bse1I	ACTGG	1 cut(s)	551
Bse3DI	GCAATG	2 cut(s)	173, 528
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	377, 580
BseGI	GGATG	1 cut(s)	373
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	733
BseMI	GCAATG	2 cut(s)	173, 528
BseNI	ACTGG	1 cut(s)	551
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	3 cut(s)	64, 67, 318
BseYI	CCCAGC	1 cut(s)	386
BsgI	GTGCAG	1 cut(s)	317
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	624
BsiSI	CCGG	2 cut(s)	109, 719
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	733
BsmAI	GTCTC	2 cut(s)	324, 609
BsmBI	CGTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	109, 624
Bsp1407I	TGTACA	1 cut(s)	129
BspACI	CCGC	3 cut(s)	102, 328, 541
BspANI	GGCC	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	106, 144, 384
BspT107I	GGYRCC	1 cut(s)	104
BsrDI	GCAATG	2 cut(s)	173, 528
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	2 cut(s)	377, 580
BssNAI	GTATAC	1 cut(s)	241
BssNI	GRCGYC	1 cut(s)	723
BssT1I	CCWWGG	1 cut(s)	377
Bst1107I	GTATAC	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	2 cut(s)	318, 658
Bst6I	CTCTTC	3 cut(s)	327, 453, 734
BstACI	GRCGYC	1 cut(s)	723
BstAPI	GCANNNNNTGC	1 cut(s)	534
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	4 cut(s)	63, 194, 254, 704
BstDSI	CCRYGG	1 cut(s)	580
BstF5I	GGATG	1 cut(s)	373
BstMAI	GTCTC	2 cut(s)	324, 609
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 258, 396, 534, 576
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	3 cut(s)	24, 107, 717
BstSLI	GKGCMC	1 cut(s)	109
BstV1I	GCAGC	3 cut(s)	64, 67, 318
BstZ17I	GTATAC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	256
BtgI	CCRYGG	1 cut(s)	580
BtsCI	GGATG	1 cut(s)	373
Cac8I	GCNNGC	4 cut(s)	63, 194, 254, 704
CaiI	CAGNNNCTG	1 cut(s)	331
CseI	GACGC	1 cut(s)	731
Csp6I	GTAC	2 cut(s)	130, 739
CviAII	CATG	4 cut(s)	62, 183, 272, 391
CviQI	GTAC	2 cut(s)	130, 739
Eam1104I	CTCTTC	3 cut(s)	327, 453, 734
EarI	CTCTTC	3 cut(s)	327, 453, 734
Eco130I	CCWWGG	1 cut(s)	377
Eco147I	AGGCCT	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	308, 465
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	377
Esp3I	CGTCTC	1 cut(s)	324
FaeI	CATG	4 cut(s)	65, 186, 275, 394
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	4 cut(s)	61, 182, 271, 390
FblI	GTMKAC	3 cut(s)	231, 240, 645
Fnu4HI	GCNGC	4 cut(s)	78, 81, 329, 332
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	4 cut(s)	78, 81, 329, 332
FspBI	CTAG	3 cut(s)	74, 258, 378
GluI	GCNGC	4 cut(s)	78, 81, 329, 332
GsaI	CCCAGC	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	568
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	2 cut(s)	109, 719
HgaI	GACGC	1 cut(s)	731
Hin1I	GRCGYC	1 cut(s)	723
Hin1II	CATG	4 cut(s)	65, 186, 275, 394
HinfI	GANTC	3 cut(s)	29, 359, 563
HpaII	CCGG	2 cut(s)	109, 719
Hpy166II	GTNNAC	5 cut(s)	130, 232, 241, 646, 739
Hpy188I	TCNGA	3 cut(s)	90, 117, 562
Hpy188III	TCNNGA	2 cut(s)	402, 608
Hpy8I	GTNNAC	5 cut(s)	130, 232, 241, 646, 739
HpyAV	CCTTC	3 cut(s)	270, 274, 440
HpyCH4III	ACNGT	2 cut(s)	318, 658
HpyCH4V	TGCA	8 cut(s)	65, 83, 166, 186, 334, 489, 528, 630
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 258, 396, 534, 576
Hsp92I	GRCGYC	1 cut(s)	723
Hsp92II	CATG	4 cut(s)	65, 186, 275, 394
LmnI	GCTCC	2 cut(s)	148, 201
Lsp1109I	GCAGC	3 cut(s)	64, 67, 318
LweI	GCATC	1 cut(s)	537
MaeI	CTAG	3 cut(s)	74, 258, 378
MaeIII	GTNAC	1 cut(s)	515
MboII	GAAGA	6 cut(s)	208, 314, 421, 470, 647, 721
MhlI	GDGCHC	2 cut(s)	109, 624
MluCI	AATT	5 cut(s)	67, 84, 122, 508, 754
MlyI	GAGTC	2 cut(s)	38, 572
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	6 cut(s)	86, 158, 454, 661, 698, 737
MseI	TTAA	3 cut(s)	417, 600, 763
MslI	CAYNNNNRTG	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	2 cut(s)	109, 719
MspR9I	CCNGG	3 cut(s)	26, 109, 719
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	5 cut(s)	47, 258, 396, 534, 576
NciI	CCSGG	2 cut(s)	109, 719
NlaIII	CATG	4 cut(s)	65, 186, 275, 394
NlaIV	GGNNCC	3 cut(s)	106, 144, 384
NmuCI	GTSAC	1 cut(s)	515
NspI	RCATGY	1 cut(s)	65
OliI	CACNNNNGTG	1 cut(s)	494
PaeI	GCATGC	1 cut(s)	65
PceI	AGGCCT	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	4 cut(s)	79, 82, 330, 333
PleI	GAGTC	2 cut(s)	37, 571
PpsI	GAGTC	2 cut(s)	37, 571
Psp6I	CCWGG	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	3 cut(s)	106, 144, 384
PstNI	CAGNNNCTG	1 cut(s)	331
RsaI	GTAC	2 cut(s)	131, 740
RsaNI	GTAC	2 cut(s)	130, 739
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	3 cut(s)	417, 600, 763
SatI	GCNGC	4 cut(s)	78, 81, 329, 332
SchI	GAGTC	2 cut(s)	38, 572
ScrFI	CCNGG	3 cut(s)	26, 109, 719
SduI	GDGCHC	2 cut(s)	109, 624
SetI	ASST	5 cut(s)	79, 210, 240, 401, 690
SfaNI	GCATC	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	2 cut(s)	34, 606
SmoI	CTYRAG	2 cut(s)	34, 606
SphI	GCATGC	1 cut(s)	65
Sse9I	AATT	5 cut(s)	67, 84, 122, 508, 754
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	3 cut(s)	102, 328, 541
SspMI	CTAG	3 cut(s)	74, 258, 378
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	3 cut(s)	24, 107, 717
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	2 cut(s)	318, 658
TasI	AATT	5 cut(s)	67, 84, 122, 508, 754
TatI	WGTACW	2 cut(s)	129, 738
TauI	GCSGC	1 cut(s)	331
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	3 cut(s)	417, 600, 763
Tru9I	TTAA	3 cut(s)	417, 600, 763
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	3 cut(s)	77, 80, 331
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	295
XapI	RAATTY	1 cut(s)	67
XceI	RCATGY	1 cut(s)	65
XmaJI	CCTAGG	1 cut(s)	377
XmiI	GTMKAC	3 cut(s)	231, 240, 645
XspI	CTAG	3 cut(s)	74, 258, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.