Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011332

Physical Location & Seq

Genomic Coordinates Forward (+)

7488479 .. 7489542

Gene Structure 1064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGTTGTTTGGACTGGGATGGTAGCATGTTATGCCGAGAATGGTTGTTCTGAAGAAGCACTCAAACTCTTCTCTCGAATGAGGGTGACTGGGTTCAGGCCAAATAATTATAGTTTTACGGGGAAGAGTGTCCATTGGCGTGTAATAAAATCATTTTATGAAGGGGATCTGTATTTGAGTACAGCATTGCTTGATATGTGCACCAAGTTTGGAGATATTCAGGAGGCTCGGCAAGTATTTCAAGTGATACCCAAAAATGATGCGGTTGCTTGGAGCCTCATGGTTTCACGGTTTGCTCAGAGCCAGCATTTGTTGTTCCCAACCATTTTACATATGCAAGCTTGTGCAACTATGGAGCATTTACTTTTCAGGAAGCAAATCCATTGCCATGTAACCGAGAGGACTCTATGGACTTATTTGTGGAGATTGGGATCACCAAATAGAAATTATGTATCTTGGAACACGATGATTGTTTACGCCCAGTTAGGTGATGGAGAGAAGGCGTTGATGTTGTTTCAAGATATGCTTAGATGCCAAGTCGAGGCAACAGAAGTGACGTACTCTAGTGCTCTCCGTGCTTCTTCTGGCCTAGCAGCGTTGGAGCCAGGAGTTCAGATACATTCTGTAACTGTTTCATGGAATACCATGATCTCGGGATATTCTATACATCGCCTTGGCCTTGGGACTCTAATTTTTTTTGAAATGATGCAGGAAACAAATTGCAAATCAAACAAGTTAATTTTTGTTGGTGTCCTGTCAGCATGTAGCAATGCAGGACTGTTAGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

264

Amino Acids

29.81

Weight (kDa)

8.11

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	2 - 40	3.7e-07	PPR repeat family
PPR	PF01535	2 - 30	3.2e-06	PPR repeat
PPR_2	PF13041	149 - 193	7.4e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13230
fragaria_vesca	FvH4_4g22970 FvH4_4g22970
malus_domestica	MD13G1127800.v1.1
prunus_persica	Prupe.1G218200_v2.0.a1
pyrus_communis	pycom13g11070 pycom16g10860 pycom16g10870
rosa_chinensis	RchiOBHm_Chr4g0429241
rosa_laevigata	RLG00000007086
rosa_multiflora	Rmu_sc0000054.1_g000027
rosa_roxburghii	Rroxscaffold_5G00370870
rosa_rugosa	Rorug04G0234000 Rorug04G0234100 Rorug04G0234200 Rorug04G0234300 Rorug04G0234400
rosa_samantha	Rh4AG290100 Rh4BG295800
rosa_wichuraiana	Rw4G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	2 cut(s)	174, 439
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	2 cut(s)	181, 560
AfiI	CCNNNNNNNGG	1 cut(s)	541
AgsI	TTSAA	3 cut(s)	242, 518, 701
AjnI	CCWGG	1 cut(s)	604
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
Alw21I	GWGCWC	2 cut(s)	203, 571
Alw44I	GTGCAC	1 cut(s)	199
AlwI	GGATC	2 cut(s)	174, 439
Ama87I	CYCGRG	1 cut(s)	652
AoxI	GGCC	3 cut(s)	98, 586, 676
ApaLI	GTGCAC	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	593
AsuHPI	GGTGA	3 cut(s)	97, 426, 500
AvaI	CYCGRG	1 cut(s)	652
BaeGI	GKGCMC	1 cut(s)	203
Bbv12I	GWGCWC	2 cut(s)	203, 571
BbvI	GCAGC	1 cut(s)	605
BccI	CCATC	2 cut(s)	13, 485
BciT130I	CCWGG	1 cut(s)	606
BfaI	CTAG	2 cut(s)	564, 590
BisI	GCNGC	1 cut(s)	594
BlsI	GCNGC	1 cut(s)	595
Bme1390I	CCNGG	1 cut(s)	606
BmeT110I	CYCGRG	1 cut(s)	652
BmiI	GGNNCC	2 cut(s)	275, 603
BmrFI	CCNGG	1 cut(s)	606
BmrI	ACTGGG	3 cut(s)	24, 99, 475
BmsI	GCATC	3 cut(s)	250, 521, 696
BmuI	ACTGGG	3 cut(s)	24, 99, 475
BsaBI	GATNNNNATC	1 cut(s)	430
BsaJI	CCNNGG	2 cut(s)	673, 679
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse1I	ACTGG	3 cut(s)	19, 94, 481
Bse3DI	GCAATG	3 cut(s)	185, 382, 775
Bse8I	GATNNNNATC	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	673, 679
BseGI	GGATG	1 cut(s)	24
BseJI	GATNNNNATC	1 cut(s)	430
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMI	GCAATG	3 cut(s)	185, 382, 775
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	3 cut(s)	19, 94, 481
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	605
BshFI	GGCC	3 cut(s)	100, 588, 678
BsiHKAI	GWGCWC	2 cut(s)	203, 571
BsiHKCI	CYCGRG	1 cut(s)	652
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmFI	GGGAC	1 cut(s)	697
BsnI	GGCC	3 cut(s)	100, 588, 678
BsoBI	CYCGRG	1 cut(s)	652
Bsp1286I	GDGCHC	2 cut(s)	203, 571
Bsp143I	GATC	4 cut(s)	166, 431, 648, 784
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	3 cut(s)	100, 588, 678
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	275, 603
BspPI	GGATC	2 cut(s)	174, 439
BsrDI	GCAATG	3 cut(s)	185, 382, 775
BsrI	ACTGG	3 cut(s)	19, 94, 481
BssECI	CCNNGG	2 cut(s)	673, 679
BssMI	GATC	4 cut(s)	166, 431, 648, 784
BssT1I	CCWWGG	2 cut(s)	673, 679
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	3 cut(s)	291, 631, 780
Bst6I	CTCTTC	2 cut(s)	74, 119
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	305, 339
BstDEI	CTNAG	2 cut(s)	297, 527
BstF5I	GGATG	1 cut(s)	24
BstKTI	GATC	4 cut(s)	169, 434, 651, 787
BstMBI	GATC	4 cut(s)	166, 431, 648, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 575
BstNI	CCWGG	1 cut(s)	606
BstNSI	RCATGY	2 cut(s)	30, 765
BstSCI	CCNGG	1 cut(s)	604
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	605
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	100, 588, 678
BtgZI	GCGATG	1 cut(s)	653
BtsCI	GGATG	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	305, 339
Csp6I	GTAC	2 cut(s)	180, 559
CviAII	CATG	6 cut(s)	27, 280, 389, 636, 646, 762
CviJI	RGCY	8 cut(s)	100, 227, 276, 303, 341, 588, 604, 678
CviKI_1	RGCY	8 cut(s)	100, 227, 276, 303, 341, 588, 604, 678
CviQI	GTAC	2 cut(s)	180, 559
DdeI	CTNAG	2 cut(s)	297, 527
DpnI	GATC	4 cut(s)	168, 433, 650, 786
DpnII	GATC	4 cut(s)	166, 431, 648, 784
Eam1104I	CTCTTC	2 cut(s)	74, 119
EarI	CTCTTC	2 cut(s)	74, 119
Eco130I	CCWWGG	2 cut(s)	673, 679
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	604
EcoT14I	CCWWGG	2 cut(s)	673, 679
ErhI	CCWWGG	2 cut(s)	673, 679
FaeI	CATG	6 cut(s)	30, 283, 392, 639, 649, 765
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	6 cut(s)	26, 279, 388, 635, 645, 761
FauNDI	CATATG	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	2 cut(s)	564, 590
GluI	GCNGC	1 cut(s)	594
HaeIII	GGCC	3 cut(s)	100, 588, 678
Hin1II	CATG	6 cut(s)	30, 283, 392, 639, 649, 765
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	2 cut(s)	403, 685
HphI	GGTGA	3 cut(s)	97, 426, 500
Hpy166II	GTNNAC	2 cut(s)	201, 475
Hpy188I	TCNGA	3 cut(s)	52, 300, 615
Hpy188III	TCNNGA	5 cut(s)	75, 221, 370, 518, 654
Hpy8I	GTNNAC	2 cut(s)	201, 475
HpyAV	CCTTC	2 cut(s)	155, 493
HpyCH4III	ACNGT	3 cut(s)	291, 631, 780
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	6 cut(s)	201, 337, 347, 709, 723, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 575
HpyF3I	CTNAG	2 cut(s)	297, 527
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	6 cut(s)	30, 283, 392, 639, 649, 765
Kzo9I	GATC	4 cut(s)	166, 431, 648, 784
LmnI	GCTCC	3 cut(s)	273, 355, 601
Lsp1109I	GCAGC	1 cut(s)	605
LweI	GCATC	3 cut(s)	250, 521, 696
MaeI	CTAG	2 cut(s)	564, 590
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	4 cut(s)	85, 391, 553, 625
MalI	GATC	4 cut(s)	168, 433, 650, 786
MboI	GATC	4 cut(s)	166, 431, 648, 784
MboII	GAAGA	4 cut(s)	61, 65, 136, 573
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	2 cut(s)	203, 571
MluCI	AATT	5 cut(s)	106, 445, 690, 718, 738
MlyI	GAGTC	2 cut(s)	397, 679
MmeI	TCCRAC	1 cut(s)	579
MnlI	CCTC	5 cut(s)	75, 217, 287, 393, 535
MseI	TTAA	1 cut(s)	737
MslI	CAYNNNNRTG	2 cut(s)	138, 387
MspR9I	CCNGG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	606
MwoI	GCNNNNNNNGC	2 cut(s)	32, 575
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	4 cut(s)	166, 431, 648, 784
NlaIII	CATG	6 cut(s)	30, 283, 392, 639, 649, 765
NlaIV	GGNNCC	2 cut(s)	275, 603
NmeAIII	GCCGAG	2 cut(s)	61, 208
NmuCI	GTSAC	2 cut(s)	85, 553
NspI	RCATGY	2 cut(s)	30, 765
PkrI	GCNGC	1 cut(s)	595
PleI	GAGTC	2 cut(s)	397, 679
PpsI	GAGTC	2 cut(s)	397, 679
Psp6I	CCWGG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	2 cut(s)	275, 603
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	2 cut(s)	181, 560
RsaNI	GTAC	2 cut(s)	180, 559
RseI	CAYNNNNRTG	2 cut(s)	138, 387
SaqAI	TTAA	1 cut(s)	737
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	4 cut(s)	166, 431, 648, 784
SchI	GAGTC	2 cut(s)	397, 679
ScrFI	CCNGG	1 cut(s)	606
SduI	GDGCHC	2 cut(s)	203, 571
SetI	ASST	3 cut(s)	343, 490, 560
SfaNI	GCATC	3 cut(s)	250, 521, 696
SmiMI	CAYNNNNRTG	2 cut(s)	138, 387
Sse9I	AATT	5 cut(s)	106, 445, 690, 718, 738
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	2 cut(s)	564, 590
StyD4I	CCNGG	1 cut(s)	604
StyI	CCWWGG	2 cut(s)	673, 679
TaaI	ACNGT	3 cut(s)	291, 631, 780
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	2 cut(s)	76, 540
TasI	AATT	5 cut(s)	106, 445, 690, 718, 738
TatI	WGTACW	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	737
Tru9I	TTAA	1 cut(s)	737
TseFI	GTSAC	2 cut(s)	85, 553
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	2 cut(s)	85, 553
TspDTI	ATGAA	2 cut(s)	174, 624
TspGWI	ACGGA	1 cut(s)	563
VneI	GTGCAC	1 cut(s)	199
XceI	RCATGY	2 cut(s)	30, 765
XcmI	CCANNNNNNNNNTGG	1 cut(s)	488
XspI	CTAG	2 cut(s)	564, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.