Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011332

Physical Location & Seq

Genomic Coordinates Forward (+)

7500491 .. 7502264

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGTTGTTTGGACTGGGATGGTAGCATGTTATGCCGAGAATGGTTGTTCTGAAGAAGCACTCAAACTCTTCTCTCGAATGAGGGTGATTGGATCCAGGCCAAATAATTATAGTTTTACGGGTACGCTTAAGGAGGCTCGGCAAGTATTTCAAGTGATACCCAAAAATGATGCGGTTGCTTGGAGCCTCATGGTTTCACGGTTTGCTCAGAGCCAGCATTTGTTGTTCCCAACCATTTTACATATGCAAGCTTGTGCAACTATGAAGCATTTAGTTTTCAGGAAGCAAATCCATTGCCATGTAACCGAGGTTGGTATTGATTCTGTTGTCTATGTTTCAAATGTCCTCATGGGTGTCTATGCTAAATGTGGAAAGATAGAGGACTCTATGGACTTATTTTTAGGTGATGGAGAGAAGGCGTTGATGTTGTTTCAAGATATGCTTAGATGCCAAGTCGAGGCAACAGAAGTGACGTACTCTAGTGCTCTCCGTGCTTCTTCTGGCCTAGCAGCGTTGGAGCCAGGAGTTCAGATACATTCTGTAACTGTTTCATGGAATACCATGATCTTGGGATATTCTACACATCGCCTTGGCCTTGGGACTCTAATTTTTTTTGAAATGATGCAGGAAACAAATTGCAAATCAAACAAGTTAATTTTTGTTGGTGTCCTGTCAGCATGTAGCAATGCAGGACTGGAGACAAGCCATCTTGGTAAGGCTGCGAAGTTGATTCAGGAAATCCCATGTGAACCTAGTATTATAGTGTGGCGTGCTTTGCTTGGAGCTTGTGTTCTCCATAATGATATTGAACTTGGAAGGACGGCTGCCAAGCATGTTCTTGAAATGGATCCTCAGGATGAGGCGACCCATGTGTTATTGTCAAACATATATGCCACCGTGAAGAGATGGAATAATGTAGCGTATGTTATCAAAAACATGAAAAGGAAAGGAGTAAAGAAGGAACCTGGACATATTCCCAATTGTAATGCCATTTTGCTTGATGTGGCAGACGATGAAAAAAAGTGCCTCTTGTGGGTACACAGCGAAAGATTTGCTCTAGCATTTGGGCTGGATAGAGCACCATCTGCGAGCCCCATTCGTATCATAAAAAGTCTTCGGATATGTATGGATTGCGATGCCACAGTGAAGTTAATATCAAAGGTTGTGCAGCGAGATATTACTGTCAGAGATATCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

400

Amino Acids

44.32

Weight (kDa)

8.47

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13230
fragaria_vesca	FvH4_4g22970 FvH4_4g22970
malus_domestica	MD13G1127800.v1.1
prunus_persica	Prupe.1G218200_v2.0.a1
pyrus_communis	pycom13g11070 pycom16g10860 pycom16g10870
rosa_chinensis	RchiOBHm_Chr4g0429241
rosa_laevigata	RLG00000007086
rosa_multiflora	Rmu_sc0000054.1_g000027
rosa_roxburghii	Rroxscaffold_5G00370870
rosa_rugosa	Rorug04G0234000 Rorug04G0234100 Rorug04G0234200 Rorug04G0234300 Rorug04G0234400
rosa_samantha	Rh4AG290100 Rh4BG295800
rosa_wichuraiana	Rw4G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	4 cut(s)	87, 100, 842, 855
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	3 cut(s)	124, 476, 1038
AfiI	CCNNNNNNNGG	2 cut(s)	457, 1033
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	6 cut(s)	152, 339, 434, 617, 809, 842
AjnI	CCWGG	3 cut(s)	95, 520, 964
AloI	GAACNNNNNNTCC	2 cut(s)	774, 806
AluBI	AGCT	2 cut(s)	251, 785
AluI	AGCT	2 cut(s)	251, 785
Alw21I	GWGCWC	2 cut(s)	487, 1081
Alw26I	GTCTC	1 cut(s)	692
AlwI	GGATC	4 cut(s)	87, 100, 842, 855
AoxI	GGCC	3 cut(s)	98, 502, 592
ApeKI	GCWGC	4 cut(s)	509, 719, 824, 1168
AsuHPI	GGTGA	2 cut(s)	97, 416
AxyI	CCTNAGG	1 cut(s)	852
BamHI	GGATCC	2 cut(s)	92, 847
BanII	GRGCYC	1 cut(s)	1094
BbsI	GAAGAC	1 cut(s)	1106
Bbv12I	GWGCWC	2 cut(s)	487, 1081
BbvI	GCAGC	4 cut(s)	521, 706, 811, 1180
BccI	CCATC	5 cut(s)	13, 401, 714, 900, 1090
BceAI	ACGGC	1 cut(s)	837
BcgI	CGANNNNNNTGC	2 cut(s)	1034, 1068
BciT130I	CCWGG	3 cut(s)	97, 522, 966
BcoDI	GTCTC	1 cut(s)	692
BfaI	CTAG	4 cut(s)	480, 506, 753, 1058
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	4 cut(s)	510, 720, 825, 1169
BlsI	GCNGC	4 cut(s)	511, 721, 826, 1170
Bme1390I	CCNGG	3 cut(s)	97, 522, 966
BmiI	GGNNCC	5 cut(s)	94, 185, 519, 849, 963
BmrFI	CCNGG	3 cut(s)	97, 522, 966
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	4 cut(s)	160, 437, 612, 1126
BmuI	ACTGGG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	1106
BpmI	CTGGAG	1 cut(s)	716
BsaJI	CCNNGG	3 cut(s)	306, 589, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	774, 804
Bsc4I	CCNNNNNNNGG	2 cut(s)	457, 1033
Bse1I	ACTGG	2 cut(s)	19, 699
Bse21I	CCTNAGG	1 cut(s)	852
Bse3DI	GCAATG	2 cut(s)	292, 691
BseBI	CCWGG	3 cut(s)	97, 522, 966
BseDI	CCNNGG	3 cut(s)	306, 589, 595
BseGI	GGATG	2 cut(s)	24, 862
BseLI	CCNNNNNNNGG	2 cut(s)	457, 1033
BseMI	GCAATG	2 cut(s)	292, 691
BseMII	CTCAG	2 cut(s)	221, 866
BseNI	ACTGG	2 cut(s)	19, 699
BseXI	GCAGC	4 cut(s)	521, 706, 811, 1180
BsgI	GTGCAG	1 cut(s)	1187
BshFI	GGCC	3 cut(s)	100, 504, 594
BsiHKAI	GWGCWC	2 cut(s)	487, 1081
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	2 cut(s)	457, 1033
BsmAI	GTCTC	1 cut(s)	692
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	3 cut(s)	100, 504, 594
Bsp1286I	GDGCHC	3 cut(s)	487, 1081, 1094
Bsp143I	GATC	3 cut(s)	92, 564, 847
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	3 cut(s)	100, 504, 594
BspCNI	CTCAG	2 cut(s)	220, 865
BspLI	GGNNCC	5 cut(s)	94, 185, 519, 849, 963
BspPI	GGATC	4 cut(s)	87, 100, 842, 855
BspTI	CTTAAG	1 cut(s)	128
BsrDI	GCAATG	2 cut(s)	292, 691
BsrI	ACTGG	2 cut(s)	19, 699
BssECI	CCNNGG	3 cut(s)	306, 589, 595
BssMI	GATC	3 cut(s)	92, 564, 847
BssT1I	CCWWGG	2 cut(s)	589, 595
Bst2UI	CCWGG	3 cut(s)	97, 522, 966
Bst4CI	ACNGT	5 cut(s)	201, 547, 898, 1144, 1183
Bst6I	CTCTTC	2 cut(s)	74, 896
BstAFI	CTTAAG	1 cut(s)	128
BstAPI	GCANNNNNTGC	2 cut(s)	32, 1085
BstC8I	GCNNGC	4 cut(s)	215, 249, 771, 1090
BstDEI	CTNAG	3 cut(s)	207, 443, 852
BstF5I	GGATG	2 cut(s)	24, 862
BstKTI	GATC	3 cut(s)	95, 567, 850
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	3 cut(s)	92, 564, 847
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 491, 775, 1085
BstNI	CCWGG	3 cut(s)	97, 522, 966
BstNSI	RCATGY	3 cut(s)	30, 681, 836
BstSCI	CCNGG	3 cut(s)	95, 520, 964
BstV1I	GCAGC	4 cut(s)	521, 706, 811, 1180
BstV2I	GAAGAC	1 cut(s)	1106
BstX2I	RGATCY	2 cut(s)	92, 847
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstYI	RGATCY	2 cut(s)	92, 847
Bsu36I	CCTNAGG	1 cut(s)	852
BsuRI	GGCC	3 cut(s)	100, 504, 594
BtgZI	GCGATG	2 cut(s)	569, 1149
BtsCI	GGATG	2 cut(s)	24, 862
BtsIMutI	CAGTG	1 cut(s)	1149
Cac8I	GCNNGC	4 cut(s)	215, 249, 771, 1090
Csp6I	GTAC	3 cut(s)	123, 475, 1037
CviQI	GTAC	3 cut(s)	123, 475, 1037
DdeI	CTNAG	3 cut(s)	207, 443, 852
DpnI	GATC	3 cut(s)	94, 566, 849
DpnII	GATC	3 cut(s)	92, 564, 847
Eam1104I	CTCTTC	2 cut(s)	74, 896
EarI	CTCTTC	2 cut(s)	74, 896
Eco130I	CCWWGG	2 cut(s)	589, 595
Eco24I	GRGCYC	1 cut(s)	1094
Eco32I	GATATC	1 cut(s)	1192
Eco57I	CTGAAG	1 cut(s)	72
Eco81I	CCTNAGG	1 cut(s)	852
EcoRII	CCWGG	3 cut(s)	95, 520, 964
EcoRV	GATATC	1 cut(s)	1192
EcoT14I	CCWWGG	2 cut(s)	589, 595
EcoT38I	GRGCYC	1 cut(s)	1094
ErhI	CCWWGG	2 cut(s)	589, 595
FalI	AAGNNNNNCTT	4 cut(s)	426, 458, 1013, 1045
FaqI	GGGAC	1 cut(s)	613
FauNDI	CATATG	1 cut(s)	243
Fnu4HI	GCNGC	4 cut(s)	510, 720, 825, 1169
FokI	GGATG	2 cut(s)	31, 869
FriOI	GRGCYC	1 cut(s)	1094
Fsp4HI	GCNGC	4 cut(s)	510, 720, 825, 1169
FspBI	CTAG	4 cut(s)	480, 506, 753, 1058
GluI	GCNGC	4 cut(s)	510, 720, 825, 1169
GsuI	CTGGAG	1 cut(s)	716
HaeIII	GGCC	3 cut(s)	100, 504, 594
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	4 cut(s)	320, 383, 601, 730
HphI	GGTGA	2 cut(s)	97, 416
Hpy166II	GTNNAC	2 cut(s)	749, 1039
Hpy188I	TCNGA	5 cut(s)	52, 210, 531, 1119, 1187
Hpy188III	TCNNGA	6 cut(s)	75, 280, 434, 734, 839, 854
Hpy8I	GTNNAC	2 cut(s)	749, 1039
HpyAV	CCTTC	3 cut(s)	409, 810, 952
HpyCH4III	ACNGT	5 cut(s)	201, 547, 898, 1144, 1183
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	6 cut(s)	247, 257, 625, 639, 689, 1168
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 491, 775, 1085
HpyF3I	CTNAG	3 cut(s)	207, 443, 852
HpySE526I	ACGT	1 cut(s)	473
Kzo9I	GATC	3 cut(s)	92, 564, 847
LmnI	GCTCC	3 cut(s)	183, 517, 782
Lsp1109I	GCAGC	4 cut(s)	521, 706, 811, 1180
LweI	GCATC	4 cut(s)	160, 437, 612, 1126
MaeI	CTAG	4 cut(s)	480, 506, 753, 1058
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	3 cut(s)	301, 469, 541
MalI	GATC	3 cut(s)	94, 566, 849
MboI	GATC	3 cut(s)	92, 564, 847
MboII	GAAGA	5 cut(s)	61, 65, 489, 913, 1106
MfeI	CAATTG	1 cut(s)	979
MflI	RGATCY	2 cut(s)	92, 847
MhlI	GDGCHC	3 cut(s)	487, 1081, 1094
MluCI	AATT	5 cut(s)	106, 606, 634, 654, 979
MlyI	GAGTC	2 cut(s)	377, 595
MmeI	TCCRAC	1 cut(s)	495
MseI	TTAA	3 cut(s)	129, 653, 1151
MslI	CAYNNNNRTG	1 cut(s)	297
MspCI	CTTAAG	1 cut(s)	128
MspR9I	CCNGG	3 cut(s)	97, 522, 966
MunI	CAATTG	1 cut(s)	979
MvaI	CCWGG	3 cut(s)	97, 522, 966
MwoI	GCNNNNNNNGC	4 cut(s)	32, 491, 775, 1085
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	3 cut(s)	92, 564, 847
NlaIV	GGNNCC	5 cut(s)	94, 185, 519, 849, 963
NmeAIII	GCCGAG	2 cut(s)	61, 118
NmuCI	GTSAC	1 cut(s)	469
NspI	RCATGY	3 cut(s)	30, 681, 836
PfeI	GAWTC	2 cut(s)	320, 730
PkrI	GCNGC	4 cut(s)	511, 721, 826, 1170
PleI	GAGTC	2 cut(s)	377, 595
PpsI	GAGTC	2 cut(s)	377, 595
Psp6I	CCWGG	3 cut(s)	95, 520, 964
PspGI	CCWGG	3 cut(s)	95, 520, 964
PspN4I	GGNNCC	5 cut(s)	94, 185, 519, 849, 963
PsuI	RGATCY	2 cut(s)	92, 847
RsaI	GTAC	3 cut(s)	124, 476, 1038
RsaNI	GTAC	3 cut(s)	123, 475, 1037
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	129, 653, 1151
SatI	GCNGC	4 cut(s)	510, 720, 825, 1169
Sau3AI	GATC	3 cut(s)	92, 564, 847
SchI	GAGTC	2 cut(s)	377, 595
ScrFI	CCNGG	3 cut(s)	97, 522, 966
SduI	GDGCHC	3 cut(s)	487, 1081, 1094
SetI	ASST	8 cut(s)	253, 312, 406, 476, 754, 787, 967, 1164
SfaNI	GCATC	4 cut(s)	160, 437, 612, 1126
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	5 cut(s)	106, 606, 634, 654, 979
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	4 cut(s)	480, 506, 753, 1058
StyD4I	CCNGG	3 cut(s)	95, 520, 964
StyI	CCWWGG	2 cut(s)	589, 595
TaaI	ACNGT	5 cut(s)	201, 547, 898, 1144, 1183
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	2 cut(s)	76, 456
TasI	AATT	5 cut(s)	106, 606, 634, 654, 979
TfiI	GAWTC	2 cut(s)	320, 730
Tru1I	TTAA	3 cut(s)	129, 653, 1151
Tru9I	TTAA	3 cut(s)	129, 653, 1151
TscAI	CASTG	1 cut(s)	1149
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	4 cut(s)	509, 719, 824, 1168
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	4 cut(s)	278, 540, 953, 1029
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	1149
Vha464I	CTTAAG	1 cut(s)	128
XceI	RCATGY	3 cut(s)	30, 681, 836
XspI	CTAG	4 cut(s)	480, 506, 753, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.