Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011332

Physical Location & Seq

Genomic Coordinates Reverse (-)

39999579 .. 40000457

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0234400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGTTCAGATTCTCAATACCAGATTCCAGCCATAGCATTCACAATCAATTCGCGTGAAGTGGACCAAGGAACTGATGAGTGGTACCATCTGTGTAAGAGGGTTAGAGAGGCTTGTGAAAATTATGGCTGCTTTGAAATTGTCACTGTAATTTCTATGCTGAAGCAACTGGAGGAACTGAAGGATATGATTAACTTGATGATTCTTGATAGTTATGGTCTGGAGGATAAATCAAACTCGATCCTGGAGTCTAAGACACTGCTACGGCTAATGAAATACATGCCACCTCCTTCGAAGGATTACACGACAGGGCTCACAGCTCACACTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

110

Amino Acids

12.65

Weight (kDa)

4.86

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13230
fragaria_vesca	FvH4_4g22970 FvH4_4g22970
malus_domestica	MD13G1127800.v1.1
prunus_persica	Prupe.1G218200_v2.0.a1
pyrus_communis	pycom13g11070 pycom16g10860 pycom16g10870
rosa_chinensis	RchiOBHm_Chr4g0429241
rosa_laevigata	RLG00000007086
rosa_multiflora	Rmu_sc0000054.1_g000027
rosa_roxburghii	Rroxscaffold_5G00370870
rosa_rugosa	Rorug04G0234000 Rorug04G0234100 Rorug04G0234200 Rorug04G0234300 Rorug04G0234400
rosa_samantha	Rh4AG290100 Rh4BG295800
rosa_wichuraiana	Rw4G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	84
AccII	CGCG	1 cut(s)	55
AclWI	GGATC	1 cut(s)	235
AcuI	CTGAAG	2 cut(s)	182, 200
AfaI	GTAC	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
AlwI	GGATC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	129
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	64
AsuII	TTCGAA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	245
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	245
BpmI	CTGGAG	3 cut(s)	191, 242, 266
Bpu14I	TTCGAA	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	38
Bsp119I	TTCGAA	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	235
BspT104I	TTCGAA	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	148
BstBI	TTCGAA	1 cut(s)	293
BstDEI	CTNAG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	243
BstMBI	GATC	1 cut(s)	240
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	116
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	3 cut(s)	144, 257, 324
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	6 cut(s)	32, 113, 129, 268, 313, 320
CviKI_1	RGCY	6 cut(s)	32, 113, 129, 268, 313, 320
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	2 cut(s)	182, 200
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	1 cut(s)	283
FaiI	YATR	6 cut(s)	35, 126, 158, 188, 216, 281
FatI	CATG	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	130
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	130
GsuI	CTGGAG	3 cut(s)	191, 242, 266
Hin1II	CATG	1 cut(s)	283
HinfI	GANTC	4 cut(s)	11, 25, 202, 248
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	2 cut(s)	206, 221
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	175, 289, 300
HpyCH4III	ACNGT	1 cut(s)	148
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	283
KpnI	GGTACC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	240
LpnPI	CCDG	7 cut(s)	35, 42, 155, 206, 230, 257, 294
Lsp1109I	GCAGC	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	4 cut(s)	49, 121, 138, 150
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	5 cut(s)	93, 103, 166, 217, 297
MseI	TTAA	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	55
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	283
NspV	TTCGAA	1 cut(s)	293
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	11, 25, 202
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	131
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	64
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	2 cut(s)	289, 322
SfuI	TTCGAA	1 cut(s)	293
SinI	GGWCC	1 cut(s)	64
Sse9I	AATT	4 cut(s)	49, 121, 138, 150
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	239, 293
TasI	AATT	4 cut(s)	49, 121, 138, 150
TfiI	GAWTC	3 cut(s)	11, 25, 202
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	3 cut(s)	151, 264, 331
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	129
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	287
TspRI	CASTG	3 cut(s)	151, 264, 331
VpaK11BI	GGWCC	1 cut(s)	64
XceI	RCATGY	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.