Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011332

Physical Location & Seq

Genomic Coordinates Forward (+)

13445169 .. 13448559

Gene Structure 3391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007086

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2499 bp

ATGCTCAGACTGATATCTCAAAAAACGTTTCAGTGTGCGAATTTCGCTACCCATTGCAAACCCAACTCTTGCTCAAGCTTTCAACAATGTGGGTACACTGCCCAATCTGCCCAATTGACCCAACGCTTCACGTTCCACCCAGAGCTTCCCAACCCAGAATTCGACTCTTACGGCTACGCAACTACACTCCAGCATCACATCCAAAACGGCGACTTTACTTCAGGAACGGCTCTTCACTGCGATATTGTCAAGAAAGGCGGATGCTTGGACCCGTTCGCTTACAACATTCTCGCCAACATGTACGTTAAAGCGGGTATAGTCAATGATGCAGTCAAGGTGTTCGACGAAATGCCCCACAGAAATGTCATTTCGTTCGTCACGTTAATCCAGGGGTTTTCGGAGTCTCAACGCTTCGTCGAGGCTGTAGATTTGTTCAGTAGGTTGCATAGAGAAGGCCAGGAGCTGAACCCGTTTGTTTTCACTACCGTTTTGAAGTTGCTTGTGAGGATGGGATTGGCTGAGCTAGTTTGGACTGTCCACGCTTGTATTTATAAGCTTGGACATGGCACCAATGCCTTTGTTGGCACTGCTCTTATTGATGCATACTCTGTTTGCGGCGACATTGATATTGCTAGGGATGTTTTCGATGGGATTGTTTGTAAGGATATGGTAGCTTGGTCTGGGATGGTAGGGTGCTATGCTGAGAATGGCGGTTTTGAAGAAGCGGTTGAGCTCTTCTGTCAAATGAGGGTGATTGGATTCAGGCCTAATAATTATACTTTCAGCGGTGTGCTTAAGGCCTGTCTCAGGTTAAAGGCACTGGATCACGGGAAGTGTGTTCATGGATGTGTGGTAAAATCATGTTTTGAAAAGGATCTATATGTGGGAATTTCATTGCTTGATTTGTACACCACATGTGGAGATGTTGATGATGCTCGGAGAGTATTTCAAGAGATGCCCAAAAATGAAGTGATTCCTTGGACTCTCATGGTTTCACGGTATGCTCAGAGTGACCACTGTGAAGAGGCGCTGGACATGTTCTGTCGGATGAGGCAAGCTTTTGTCGCTCCCAATCAGTTTACATATGCTAGTGTGCTGCAAGCTTGTGCGACCATGGAGAGTTTAGTTTTGGGGATGCAAGTACATTGTCAAGTAGTCAAGGTTGGTCTTGACTCAGATATCTATGTTTTAAATGCCCTCATGGATTTCTATGCTAAATGTGGACAAATAGAGAACTCAATGGACCTGTTTGTGGGATCATCGAACAGAAATGATGTATCTTGGAACACAGTGATTGTTGGTTATGTCCAGTTAGGTGATGGGGAGAAGGCGTTGACTTTGTTTTCAGATATGCTTAGATGCCAGGTGCAGGTCACAGAAGTGACGTACTCTAGTGCTCTCCGTGCTTCCTCTAGCATAGCAGCGTTGGAGCCAGGACTTCAGATTCATTCAGTGACAATTAAAACCATATATGACAAGGACACTGTAGTTGGTAATTCTTTGATAGACATGTATGCCAAGTGTGGAAGCATCAAAGATGCCCGCTTGGTTTTCGATAAATTGAAGCAACGAGATGAAGTTTCATGGAATGCAATGATCTCAGGATATTCTTTGCATGGTCTTGGTAAGGAGGCTCTTAAACTTTTTGAAATGATGCAGGAAACAAATTGCAAACCAAACAAGTTAACCTTTGTTGGTGTCCTATCGGCATGTAGCCATGCAGGACTGTTAGACCAAGGGAATGCTTATTTTAATTCTATGGTAGAAGACTACTACATTGAACCATGCATGGAGCACTATACTTGTATGGTCTGGCTACTAGGGAAATCAGGCCAGCTTGGTAAGGCTGTGAAGTTGATTGGTGAAATCCCATTTGAACCTAGTGCTATGGTATGGCGTGCTTTGCTCGGAGCCTGTGTTATCCATAATCACGTTGAGCTTGGAAGGATTTGTGCCCAGCATGTGCTCGAAATGGATCCCCAAGATGATGCTACGCATGTGCTGTTGTCAAACTTATATGCCACTGCAAAGAGGTGGGATAATGTGGCTTCTGTTAGAAAAAACATGAAAAGGAAAGGAGTAAAGAAGGAGCCGGGCCTAAGTTGGATTGAGAACCAGGGCACAGTTCATTATTTCACTGTGGGTGATACTTCACATCCTGACCTGAGACTGATCAATGGGATGCTGGAATGGTTGAAAATGAGAACCTTGAAGGCAGGTCATGTTCCCAATTGTAATGTTGTTATGCTTGATGTTGATGATGATGAAAAGGAGCGCCTCTTGTGGGTACACAGTGAAAGATTAGCTCTAGCACTTGCGCTGGTTAGAACTCCGTCTGGGAGCCCCATTCGTATCATTAAAAATCTTCGGATATGTGTAGACTGCCATGCCACGATGAAGTTAATATCTAAGGTCATGCAGCGTGAAATAATTGTTAGAGATATGAATCGGTTCCATCACTTTAAGGGTGGGATTTGCTCCTGTGACGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

833

Amino Acids

93.23

Weight (kDa)

6.28

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	222 - 269	2.8e-09	PPR repeat family
PPR_2	PF13041	326 - 370	1.7e-06	PPR repeat family
PPR_2	PF13041	424 - 469	6.6e-10	PPR repeat family
PPR	PF01535	426 - 455	1.1e-06	PPR repeat
PPR_2	PF13041	525 - 572	5.9e-12	PPR repeat family
PPR	PF01535	527 - 556	1.8e-08	PPR repeat
E_motif	PF20431	642 - 704	1.3e-22	E motif
DYW_deaminase	PF14432	740 - 832	9.6e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13230
fragaria_vesca	FvH4_4g22970 FvH4_4g22970
malus_domestica	MD13G1127800.v1.1
prunus_persica	Prupe.1G218200_v2.0.a1
pyrus_communis	pycom13g11070 pycom16g10860 pycom16g10870
rosa_chinensis	RchiOBHm_Chr4g0429241
rosa_laevigata	RLG00000007086
rosa_multiflora	Rmu_sc0000054.1_g000027
rosa_roxburghii	Rroxscaffold_5G00370870
rosa_rugosa	Rorug04G0234000 Rorug04G0234100 Rorug04G0234200 Rorug04G0234300 Rorug04G0234400
rosa_samantha	Rh4AG290100 Rh4BG295800
rosa_wichuraiana	Rw4G025120

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
Acc36I	ACCTGC	2 cut(s)	1360, 2207
AccB1I	GGYRCC	1 cut(s)	566
AccI	GTMKAC	1 cut(s)	2379
AciI	CCGC	7 cut(s)	258, 311, 615, 711, 725, 786, 1543
AclI	AACGTT	1 cut(s)	26
AclWI	GGATC	5 cut(s)	831, 882, 1264, 1970, 1983
AcsI	RAATTY	3 cut(s)	40, 158, 888
AcuI	CTGAAG	2 cut(s)	204, 1424
AfaI	GTAC	6 cut(s)	95, 302, 908, 1143, 1388, 2289
AfiI	CCNNNNNNNGG	4 cut(s)	807, 1252, 1369, 2284
AflII	CTTAAG	1 cut(s)	794
AflIII	ACRYGT	4 cut(s)	297, 914, 1035, 1509
AjnI	CCWGG	5 cut(s)	387, 456, 1362, 1432, 2115
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AleI	CACNNNNGTG	1 cut(s)	1379
Alw21I	GWGCWC	4 cut(s)	735, 1399, 1797, 1968
Alw26I	GTCTC	3 cut(s)	408, 809, 2161
AlwI	GGATC	5 cut(s)	831, 882, 1264, 1970, 1983
AlwNI	CAGNNNCTG	1 cut(s)	463
AoxI	GGCC	5 cut(s)	454, 764, 798, 1831, 2095
ApeKI	GCWGC	3 cut(s)	1096, 1421, 2419
ApoI	RAATTY	3 cut(s)	40, 158, 888
Asp700I	GAANNNNTTC	2 cut(s)	972, 2450
AspLEI	GCGC	3 cut(s)	1030, 2277, 2320
AspS9I	GGNCC	3 cut(s)	268, 1243, 2095
AsuC2I	CCSGG	1 cut(s)	2094
AsuHPI	GGTGA	4 cut(s)	763, 1328, 1874, 2156
AvaII	GGWCC	2 cut(s)	268, 1243
BaeGI	GKGCMC	2 cut(s)	1957, 2123
BamHI	GGATCC	1 cut(s)	1975
BanI	GGYRCC	1 cut(s)	566
BanII	GRGCYC	2 cut(s)	735, 2345
BbsI	GAAGAC	1 cut(s)	1773
Bbv12I	GWGCWC	4 cut(s)	735, 1399, 1797, 1968
BbvI	GCAGC	3 cut(s)	1083, 1433, 2431
BccI	CCATC	5 cut(s)	502, 641, 679, 1313, 2463
BceAI	ACGGC	3 cut(s)	187, 223, 243
BciT130I	CCWGG	5 cut(s)	389, 458, 1364, 1434, 2117
BclI	TGATCA	1 cut(s)	2172
BcnI	CCSGG	1 cut(s)	2094
BcoDI	GTCTC	3 cut(s)	408, 809, 2161
BfaI	CTAG	8 cut(s)	524, 633, 1089, 1392, 1413, 1820, 1881, 2309
BfmI	CTRYAG	2 cut(s)	423, 1485
BfoI	RGCGCY	2 cut(s)	1031, 2278
BfrI	CTTAAG	1 cut(s)	794
BfuAI	ACCTGC	2 cut(s)	1360, 2207
BisI	GCNGC	4 cut(s)	616, 1097, 1422, 2420
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	4 cut(s)	617, 1098, 1423, 2421
Bme1390I	CCNGG	6 cut(s)	389, 458, 1364, 1434, 2094, 2117
Bme18I	GGWCC	2 cut(s)	268, 1243
BmgT120I	GGNCC	3 cut(s)	268, 1243, 2095
BmiI	GGNNCC	8 cut(s)	270, 568, 1431, 1912, 1977, 2091, 2342, 2453
BmrFI	CCNGG	6 cut(s)	389, 458, 1364, 1434, 2094, 2117
BpiI	GAAGAC	1 cut(s)	1773
BpmI	CTGGAG	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	2094
BsaBI	GATNNNNATC	1 cut(s)	2445
BsaJI	CCNNGG	5 cut(s)	388, 977, 1113, 1735, 2116
BsaXI	ACNNNNNCTCC	4 cut(s)	1316, 1346, 1902, 1932
Bsc4I	CCNNNNNNNGG	4 cut(s)	807, 1252, 1369, 2284
Bse1I	ACTGG	3 cut(s)	825, 1309, 2498
Bse3DI	GCAATG	3 cut(s)	52, 893, 1599
Bse8I	GATNNNNATC	1 cut(s)	2445
BseBI	CCWGG	5 cut(s)	389, 458, 1364, 1434, 2117
BseDI	CCNNGG	5 cut(s)	388, 977, 1113, 1735, 2116
BseJI	GATNNNNATC	1 cut(s)	2445
BseLI	CCNNNNNNNGG	4 cut(s)	807, 1252, 1369, 2284
BseMI	GCAATG	3 cut(s)	52, 893, 1599
BseMII	CTCAG	8 cut(s)	19, 510, 693, 820, 1019, 1188, 1614, 2156
BseNI	ACTGG	3 cut(s)	825, 1309, 2498
BseSI	GKGCMC	2 cut(s)	1957, 2123
BseXI	GCAGC	3 cut(s)	1083, 1433, 2431
BseYI	CCCAGC	1 cut(s)	1956
BsgI	GTGCAG	1 cut(s)	1388
BshFI	GGCC	5 cut(s)	456, 766, 800, 1833, 2097
BshNI	GGYRCC	1 cut(s)	566
BsiHKAI	GWGCWC	4 cut(s)	735, 1399, 1797, 1968
BsiSI	CCGG	1 cut(s)	2093
BslI	CCNNNNNNNGG	4 cut(s)	807, 1252, 1369, 2284
BsmAI	GTCTC	3 cut(s)	408, 809, 2161
BsmI	GAATGC	2 cut(s)	1594, 1747
BsnI	GGCC	5 cut(s)	456, 766, 800, 1833, 2097
Bsp1286I	GDGCHC	7 cut(s)	735, 1399, 1797, 1957, 1968, 2123, 2345
Bsp1407I	TGTACA	1 cut(s)	906
Bsp143I	GATC	6 cut(s)	823, 874, 1256, 1596, 1975, 2172
Bsp1720I	GCTNAGC	1 cut(s)	519
Bsp19I	CCATGG	1 cut(s)	1113
BspACI	CCGC	7 cut(s)	258, 311, 615, 711, 725, 786, 1543
BspANI	GGCC	5 cut(s)	456, 766, 800, 1833, 2097
BspCNI	CTCAG	8 cut(s)	18, 511, 694, 819, 1018, 1187, 1613, 2157
BspLI	GGNNCC	8 cut(s)	270, 568, 1431, 1912, 1977, 2091, 2342, 2453
BspMI	ACCTGC	2 cut(s)	1360, 2207
BspPI	GGATC	5 cut(s)	831, 882, 1264, 1970, 1983
BspQI	GCTCTTC	2 cut(s)	237, 740
BspT107I	GGYRCC	1 cut(s)	566
BspTI	CTTAAG	1 cut(s)	794
BsrDI	GCAATG	3 cut(s)	52, 893, 1599
BsrGI	TGTACA	1 cut(s)	906
BsrI	ACTGG	3 cut(s)	825, 1309, 2498
BssECI	CCNNGG	5 cut(s)	388, 977, 1113, 1735, 2116
BssMI	GATC	6 cut(s)	823, 874, 1256, 1596, 1975, 2172
BssT1I	CCWWGG	3 cut(s)	977, 1113, 1735
Bst2UI	CCWGG	5 cut(s)	389, 458, 1364, 1434, 2117
Bst6I	CTCTTC	3 cut(s)	237, 740, 1017
BstAFI	CTTAAG	1 cut(s)	794
BstAUI	TGTACA	1 cut(s)	906
BstC8I	GCNNGC	5 cut(s)	1056, 1101, 1543, 1835, 1899
BstDSI	CCRYGG	1 cut(s)	1113
BstENI	CCTNNNNNAGG	1 cut(s)	805
BstH2I	RGCGCY	2 cut(s)	1031, 2278
BstHHI	GCGC	3 cut(s)	1030, 2277, 2320
BstKTI	GATC	6 cut(s)	826, 877, 1259, 1599, 1978, 2175
BstMAI	GTCTC	3 cut(s)	408, 809, 2161
BstMBI	GATC	6 cut(s)	823, 874, 1256, 1596, 1975, 2172
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 107, 1064, 1403, 1903
BstNI	CCWGG	5 cut(s)	389, 458, 1364, 1434, 2117
BstNSI	RCATGY	7 cut(s)	301, 918, 1039, 1513, 1713, 1964, 2000
BstSCI	CCNGG	6 cut(s)	387, 456, 1362, 1432, 2092, 2115
BstSFI	CTRYAG	2 cut(s)	423, 1485
BstSLI	GKGCMC	2 cut(s)	1957, 2123
BstV1I	GCAGC	3 cut(s)	1083, 1433, 2431
BstV2I	GAAGAC	1 cut(s)	1773
BstX2I	RGATCY	2 cut(s)	874, 1975
BstYI	RGATCY	2 cut(s)	874, 1975
BsuRI	GGCC	5 cut(s)	456, 766, 800, 1833, 2097
BtgI	CCRYGG	1 cut(s)	1113
BtsI	GCAGTG	4 cut(s)	96, 235, 585, 2022
BveI	ACCTGC	2 cut(s)	1360, 2207
Cac8I	GCNNGC	5 cut(s)	1056, 1101, 1543, 1835, 1899
CaiI	CAGNNNCTG	1 cut(s)	463
CfoI	GCGC	3 cut(s)	1030, 2277, 2320
Cfr13I	GGNCC	3 cut(s)	268, 1243, 2095
Csp6I	GTAC	6 cut(s)	94, 301, 907, 1142, 1387, 2288
CviQI	GTAC	6 cut(s)	94, 301, 907, 1142, 1387, 2288
DpnI	GATC	6 cut(s)	825, 876, 1258, 1598, 1977, 2174
DpnII	GATC	6 cut(s)	823, 874, 1256, 1596, 1975, 2172
DraI	TTTAAA	1 cut(s)	1191
Eam1104I	CTCTTC	3 cut(s)	237, 740, 1017
EarI	CTCTTC	3 cut(s)	237, 740, 1017
EciI	GGCGGA	1 cut(s)	273
Ecl136II	GAGCTC	1 cut(s)	733
Eco130I	CCWWGG	3 cut(s)	977, 1113, 1735
Eco147I	AGGCCT	2 cut(s)	766, 800
Eco24I	GRGCYC	2 cut(s)	735, 2345
Eco32I	GATATC	2 cut(s)	15, 1180
Eco47I	GGWCC	2 cut(s)	268, 1243
Eco53kI	GAGCTC	1 cut(s)	733
Eco57I	CTGAAG	2 cut(s)	204, 1424
EcoICRI	GAGCTC	1 cut(s)	733
EcoNI	CCTNNNNNAGG	1 cut(s)	805
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	5 cut(s)	387, 456, 1362, 1432, 2115
EcoRV	GATATC	2 cut(s)	15, 1180
EcoT14I	CCWWGG	3 cut(s)	977, 1113, 1735
EcoT22I	ATGCAT	2 cut(s)	604, 1790
EcoT38I	GRGCYC	2 cut(s)	735, 2345
ErhI	CCWWGG	3 cut(s)	977, 1113, 1735
FalI	AAGNNNNNCTT	2 cut(s)	1673, 1705
FauI	CCCGC	2 cut(s)	304, 1550
FauNDI	CATATG	1 cut(s)	1084
FbaI	TGATCA	1 cut(s)	2172
FblI	GTMKAC	1 cut(s)	2379
Fnu4HI	GCNGC	4 cut(s)	616, 1097, 1422, 2420
FriOI	GRGCYC	2 cut(s)	735, 2345
Fsp4HI	GCNGC	4 cut(s)	616, 1097, 1422, 2420
FspBI	CTAG	8 cut(s)	524, 633, 1089, 1392, 1413, 1820, 1881, 2309
GlaI	GCGC	3 cut(s)	1029, 2276, 2319
GluI	GCNGC	4 cut(s)	616, 1097, 1422, 2420
GsaI	CCCAGC	1 cut(s)	1960
GsuI	CTGGAG	1 cut(s)	173
HaeII	RGCGCY	2 cut(s)	1031, 2278
HaeIII	GGCC	5 cut(s)	456, 766, 800, 1833, 2097
HapII	CCGG	1 cut(s)	2093
HhaI	GCGC	3 cut(s)	1030, 2277, 2320
Hin6I	GCGC	3 cut(s)	1028, 2275, 2318
HinP1I	GCGC	3 cut(s)	1028, 2275, 2318
HincII	GTYRAC	2 cut(s)	1335, 1686
HindII	GTYRAC	2 cut(s)	1335, 1686
HindIII	AAGCTT	4 cut(s)	76, 554, 1056, 1101
HinfI	GANTC	8 cut(s)	164, 401, 759, 973, 982, 1172, 1444, 2446
HpaI	GTTAAC	1 cut(s)	1686
HpaII	CCGG	1 cut(s)	2093
HphI	GGTGA	4 cut(s)	763, 1328, 1874, 2156
Hpy166II	GTNNAC	9 cut(s)	96, 538, 909, 1080, 1223, 1335, 1686, 2290, 2380
Hpy188III	TCNNGA	6 cut(s)	222, 250, 950, 1169, 1602, 2159
Hpy8I	GTNNAC	9 cut(s)	96, 538, 909, 1080, 1223, 1335, 1686, 2290, 2380
Hpy99I	CGWCG	2 cut(s)	347, 419
HpyAV	CCTTC	5 cut(s)	446, 1321, 1938, 2080, 2206
HpyCH4IV	ACGT	6 cut(s)	26, 131, 303, 380, 1385, 1932
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 107, 1064, 1403, 1903
HpySE526I	ACGT	6 cut(s)	26, 131, 303, 380, 1385, 1932
HspAI	GCGC	3 cut(s)	1028, 2275, 2318
Ksp22I	TGATCA	1 cut(s)	2172
KspAI	GTTAAC	1 cut(s)	1686
Kzo9I	GATC	6 cut(s)	823, 874, 1256, 1596, 1975, 2172
LguI	GCTCTTC	2 cut(s)	237, 740
LmnI	GCTCC	9 cut(s)	460, 1072, 1429, 1792, 1910, 2089, 2272, 2340, 2483
Lsp1109I	GCAGC	3 cut(s)	1083, 1433, 2431
MaeI	CTAG	8 cut(s)	524, 633, 1089, 1392, 1413, 1820, 1881, 2309
MaeII	ACGT	6 cut(s)	26, 131, 303, 380, 1385, 1932
MaeIII	GTNAC	6 cut(s)	376, 1010, 1372, 1381, 1453, 2483
MalI	GATC	6 cut(s)	825, 876, 1258, 1598, 1977, 2174
MboI	GATC	6 cut(s)	823, 874, 1256, 1596, 1975, 2172
MboII	GAAGA	6 cut(s)	224, 727, 731, 1034, 1778, 2357
MfeI	CAATTG	2 cut(s)	113, 2230
MflI	RGATCY	2 cut(s)	874, 1975
MhlI	GDGCHC	7 cut(s)	735, 1399, 1797, 1957, 1968, 2123, 2345
MlyI	GAGTC	4 cut(s)	158, 410, 976, 1166
MmeI	TCCRAC	3 cut(s)	1025, 1407, 2084
Mph1103I	ATGCAT	2 cut(s)	604, 1790
MroXI	GAANNNNTTC	2 cut(s)	972, 2450
MslI	CAYNNNNRTG	3 cut(s)	360, 846, 1379
MspA1I	CMGCKG	1 cut(s)	786
MspCI	CTTAAG	1 cut(s)	794
MspI	CCGG	1 cut(s)	2093
MspR9I	CCNGG	6 cut(s)	389, 458, 1364, 1434, 2094, 2117
MunI	CAATTG	2 cut(s)	113, 2230
Mva1269I	GAATGC	2 cut(s)	1594, 1747
MvaI	CCWGG	5 cut(s)	389, 458, 1364, 1434, 2117
MwoI	GCNNNNNNNGC	5 cut(s)	44, 107, 1064, 1403, 1903
NciI	CCSGG	1 cut(s)	2094
NcoI	CCATGG	1 cut(s)	1113
NdeI	CATATG	1 cut(s)	1084
NdeII	GATC	6 cut(s)	823, 874, 1256, 1596, 1975, 2172
NlaIV	GGNNCC	8 cut(s)	270, 568, 1431, 1912, 1977, 2091, 2342, 2453
NmuCI	GTSAC	6 cut(s)	376, 1010, 1372, 1381, 1453, 2483
NsiI	ATGCAT	2 cut(s)	604, 1790
NspI	RCATGY	7 cut(s)	301, 918, 1039, 1513, 1713, 1964, 2000
OliI	CACNNNNGTG	1 cut(s)	1379
PceI	AGGCCT	2 cut(s)	766, 800
PciI	ACATGT	4 cut(s)	297, 914, 1035, 1509
PciSI	GCTCTTC	2 cut(s)	237, 740
PcsI	WCGNNNNNNNCGW	1 cut(s)	377
PctI	GAATGC	2 cut(s)	1594, 1747
PdmI	GAANNNNTTC	2 cut(s)	972, 2450
PfeI	GAWTC	4 cut(s)	759, 973, 1444, 2446
PkrI	GCNGC	4 cut(s)	617, 1098, 1423, 2421
PleI	GAGTC	4 cut(s)	158, 409, 976, 1166
PpsI	GAGTC	4 cut(s)	158, 409, 976, 1166
PscI	ACATGT	4 cut(s)	297, 914, 1035, 1509
PsiI	TTATAA	1 cut(s)	552
Psp124BI	GAGCTC	1 cut(s)	735
Psp1406I	AACGTT	1 cut(s)	26
Psp6I	CCWGG	5 cut(s)	387, 456, 1362, 1432, 2115
PspFI	CCCAGC	1 cut(s)	1956
PspGI	CCWGG	5 cut(s)	387, 456, 1362, 1432, 2115
PspN4I	GGNNCC	8 cut(s)	270, 568, 1431, 1912, 1977, 2091, 2342, 2453
PspPI	GGNCC	3 cut(s)	268, 1243, 2095
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	2 cut(s)	874, 1975
RsaI	GTAC	6 cut(s)	95, 302, 908, 1143, 1388, 2289
RsaNI	GTAC	6 cut(s)	94, 301, 907, 1142, 1387, 2288
RseI	CAYNNNNRTG	3 cut(s)	360, 846, 1379
SacI	GAGCTC	1 cut(s)	735
SapI	GCTCTTC	2 cut(s)	237, 740
SatI	GCNGC	4 cut(s)	616, 1097, 1422, 2420
Sau3AI	GATC	6 cut(s)	823, 874, 1256, 1596, 1975, 2172
Sau96I	GGNCC	3 cut(s)	268, 1243, 2095
SchI	GAGTC	4 cut(s)	158, 410, 976, 1166
ScrFI	CCNGG	6 cut(s)	389, 458, 1364, 1434, 2094, 2117
SduI	GDGCHC	7 cut(s)	735, 1399, 1797, 1957, 1968, 2123, 2345
SfcI	CTRYAG	2 cut(s)	423, 1485
SinI	GGWCC	2 cut(s)	268, 1243
SmiMI	CAYNNNNRTG	3 cut(s)	360, 846, 1379
SmlI	CTYRAG	2 cut(s)	73, 794
SmoI	CTYRAG	2 cut(s)	73, 794
SseBI	AGGCCT	2 cut(s)	766, 800
SsiI	CCGC	7 cut(s)	258, 311, 615, 711, 725, 786, 1543
SspMI	CTAG	8 cut(s)	524, 633, 1089, 1392, 1413, 1820, 1881, 2309
SstI	GAGCTC	1 cut(s)	735
StuI	AGGCCT	2 cut(s)	766, 800
StyD4I	CCNGG	6 cut(s)	387, 456, 1362, 1432, 2092, 2115
StyI	CCWWGG	3 cut(s)	977, 1113, 1735
TaiI	ACGT	6 cut(s)	29, 134, 306, 383, 1388, 1935
TaqI	TCGA	7 cut(s)	162, 342, 417, 645, 1262, 1554, 1968
TatI	WGTACW	2 cut(s)	906, 1141
TauI	GCSGC	1 cut(s)	618
TfiI	GAWTC	4 cut(s)	759, 973, 1444, 2446
TseFI	GTSAC	6 cut(s)	376, 1010, 1372, 1381, 1453, 2483
TseI	GCWGC	3 cut(s)	1096, 1421, 2419
Tsp45I	GTSAC	6 cut(s)	376, 1010, 1372, 1381, 1453, 2483
TspGWI	ACGGA	2 cut(s)	1391, 2322
Vha464I	CTTAAG	1 cut(s)	794
VpaK11BI	GGWCC	2 cut(s)	268, 1243
XagI	CCTNNNNNAGG	1 cut(s)	805
XapI	RAATTY	3 cut(s)	40, 158, 888
XceI	RCATGY	7 cut(s)	301, 918, 1039, 1513, 1713, 1964, 2000
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1316
XmiI	GTMKAC	1 cut(s)	2379
XmnI	GAANNNNTTC	2 cut(s)	972, 2450
XspI	CTAG	8 cut(s)	524, 633, 1089, 1392, 1413, 1820, 1881, 2309
Zsp2I	ATGCAT	2 cut(s)	604, 1790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.