Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011332

Physical Location & Seq

Genomic Coordinates Reverse (-)

39899165 .. 39899650

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0234000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGATGAATGCTTTGCAGCTCAAGGGAAATCAAAGCGCAATGCTCAAGTGATCACAAACTTGCATCATTATCGTGTTCAGTTATTTTATACTGTTATTGATAATCAGCTTCAAGAGTTGGATGATCTTTTCAATGAGAAGAATATTGAGCTGCTTCTTTGTATGTCATGTTTGAACCCGAGAAATTCATTCTCAGCTTTTGACAAAGAAAAGTTGATAAAGCTGGCCCAATATTATCCTCAGGATTTTTCTGCACATGATCTAGAGGTACTTGATGATCAACTTGAAAATTACATAGTAGACATGCGCTCCAACATTGAGTTTTCTGAATTGAAGGGAATTACTGATCTTGCACGAAAGATGGTTCAGACAAAAAAAAGATGTGATATACTGACATATCCATTGGTGTACTTGCTTTTGACATTACCATTGATTTTACCAGTTGCATGCGCGACTGCAAGTGTAGAGAGAGTATTTTTGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

161

Amino Acids

18.68

Weight (kDa)

5.18

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13230
fragaria_vesca	FvH4_4g22970 FvH4_4g22970
malus_domestica	MD13G1127800.v1.1
prunus_persica	Prupe.1G218200_v2.0.a1
pyrus_communis	pycom13g11070 pycom16g10860 pycom16g10870
rosa_chinensis	RchiOBHm_Chr4g0429241
rosa_laevigata	RLG00000007086
rosa_multiflora	Rmu_sc0000054.1_g000027
rosa_roxburghii	Rroxscaffold_5G00370870
rosa_rugosa	Rorug04G0234000 Rorug04G0234100 Rorug04G0234200 Rorug04G0234300 Rorug04G0234400
rosa_samantha	Rh4AG290100 Rh4BG295800
rosa_wichuraiana	Rw4G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	184
AfaI	GTAC	2 cut(s)	270, 410
AgsI	TTSAA	5 cut(s)	113, 133, 175, 287, 334
AluBI	AGCT	5 cut(s)	20, 109, 151, 197, 223
AluI	AGCT	5 cut(s)	20, 109, 151, 197, 223
Ama87I	CYCGRG	1 cut(s)	178
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	2 cut(s)	17, 151
ApoI	RAATTY	1 cut(s)	184
AspLEI	GCGC	3 cut(s)	39, 309, 452
AspS9I	GGNCC	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	178
AxyI	CCTNAGG	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	29, 138
BccI	CCATC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BclI	TGATCA	2 cut(s)	51, 277
BfaI	CTAG	1 cut(s)	263
BisI	GCNGC	2 cut(s)	18, 152
BlsI	GCNGC	2 cut(s)	19, 153
BmeT110I	CYCGRG	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	226
BmsI	GCATC	1 cut(s)	73
BpuEI	CTTGAG	2 cut(s)	6, 30
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bse1I	ACTGG	1 cut(s)	440
Bse21I	CCTNAGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	46
BseGI	GGATG	2 cut(s)	10, 127
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	2 cut(s)	207, 254
BseNI	ACTGG	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	29, 138
BsgI	GTGCAG	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	452
BshFI	GGCC	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	178
Bsp143I	GATC	5 cut(s)	51, 124, 259, 277, 346
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	2 cut(s)	206, 253
BspFNI	CGCG	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	440
BssMI	GATC	5 cut(s)	51, 124, 259, 277, 346
Bst4CI	ACNGT	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	225, 448
BstDEI	CTNAG	2 cut(s)	193, 240
BstF5I	GGATG	2 cut(s)	10, 127
BstFNI	CGCG	1 cut(s)	452
BstHHI	GCGC	3 cut(s)	39, 309, 452
BstKTI	GATC	5 cut(s)	54, 127, 262, 280, 349
BstMBI	GATC	5 cut(s)	51, 124, 259, 277, 346
BstNSI	RCATGY	2 cut(s)	307, 450
BstUI	CGCG	1 cut(s)	452
BstV1I	GCAGC	2 cut(s)	29, 138
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	10, 127
Cac8I	GCNNGC	2 cut(s)	225, 448
CfoI	GCGC	3 cut(s)	39, 309, 452
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	269, 409
CviAII	CATG	4 cut(s)	168, 257, 304, 447
CviJI	RGCY	6 cut(s)	20, 109, 151, 197, 223, 227
CviKI_1	RGCY	6 cut(s)	20, 109, 151, 197, 223, 227
CviQI	GTAC	2 cut(s)	269, 409
DdeI	CTNAG	2 cut(s)	193, 240
DpnI	GATC	5 cut(s)	53, 126, 261, 279, 348
DpnII	GATC	5 cut(s)	51, 124, 259, 277, 346
Eco81I	CCTNAGG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	178
FaeI	CATG	4 cut(s)	171, 260, 307, 450
FatI	CATG	4 cut(s)	167, 256, 303, 446
FbaI	TGATCA	2 cut(s)	51, 277
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	18, 152
FokI	GGATG	2 cut(s)	17, 134
Fsp4HI	GCNGC	2 cut(s)	18, 152
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	3 cut(s)	38, 308, 451
GluI	GCNGC	2 cut(s)	18, 152
HaeIII	GGCC	1 cut(s)	227
HhaI	GCGC	3 cut(s)	39, 309, 452
Hin1II	CATG	4 cut(s)	171, 260, 307, 450
Hin6I	GCGC	3 cut(s)	37, 307, 450
HinP1I	GCGC	3 cut(s)	37, 307, 450
Hpy166II	GTNNAC	2 cut(s)	301, 409
Hpy188I	TCNGA	2 cut(s)	328, 369
Hpy188III	TCNNGA	3 cut(s)	113, 242, 263
Hpy8I	GTNNAC	2 cut(s)	301, 409
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	6 cut(s)	17, 64, 254, 353, 446, 458
HpyF3I	CTNAG	2 cut(s)	193, 240
Hsp92II	CATG	4 cut(s)	171, 260, 307, 450
HspAI	GCGC	3 cut(s)	37, 307, 450
Ksp22I	TGATCA	2 cut(s)	51, 277
Kzo9I	GATC	5 cut(s)	51, 124, 259, 277, 346
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	3 cut(s)	209, 227, 453
Lsp1109I	GCAGC	2 cut(s)	29, 138
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	263
MalI	GATC	5 cut(s)	53, 126, 261, 279, 348
MboI	GATC	5 cut(s)	51, 124, 259, 277, 346
MboII	GAAGA	1 cut(s)	151
MluCI	AATT	4 cut(s)	184, 289, 329, 339
MmeI	TCCRAC	2 cut(s)	99, 336
MnlI	CCTC	2 cut(s)	249, 259
MslI	CAYNNNNRTG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	14
MvnI	CGCG	1 cut(s)	452
NdeII	GATC	5 cut(s)	51, 124, 259, 277, 346
NlaIII	CATG	4 cut(s)	171, 260, 307, 450
NspI	RCATGY	2 cut(s)	307, 450
PaeI	GCATGC	1 cut(s)	450
PctI	GAATGC	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	19, 153
PspPI	GGNCC	1 cut(s)	226
RsaI	GTAC	2 cut(s)	270, 410
RsaNI	GTAC	2 cut(s)	269, 409
RseI	CAYNNNNRTG	1 cut(s)	72
SatI	GCNGC	2 cut(s)	18, 152
Sau3AI	GATC	5 cut(s)	51, 124, 259, 277, 346
Sau96I	GGNCC	1 cut(s)	226
SetI	ASST	6 cut(s)	22, 111, 153, 199, 225, 270
SfaNI	GCATC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	2 cut(s)	21, 45
SmoI	CTYRAG	2 cut(s)	21, 45
SphI	GCATGC	1 cut(s)	450
Sse9I	AATT	4 cut(s)	184, 289, 329, 339
SspI	AATATT	2 cut(s)	145, 233
SspMI	CTAG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	94
TasI	AATT	4 cut(s)	184, 289, 329, 339
TatI	WGTACW	1 cut(s)	408
TseI	GCWGC	2 cut(s)	17, 151
TspDTI	ATGAA	2 cut(s)	21, 177
XapI	RAATTY	1 cut(s)	184
XbaI	TCTAGA	1 cut(s)	262
XceI	RCATGY	2 cut(s)	307, 450
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.