Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011332

Physical Location & Seq

Genomic Coordinates Forward (+)

7500491 .. 7502264

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGTTGTTTGGACTGGGATGGTAGCATGTTATGCCGAGAATGGTTGTTCTGAAGAAGCACTCAAACTCTTCTCTCGAATGAGGGTGATTGGATCCAGGCCAAATAATTATAGTTTTACGGGTACGCTTAAGGAGGCTCGGCAAGTATTTCAAGTGATACCCAAAAATGATGCGGTTGCTTGGAGCCTCATGGTTTCACGGTTTGCTCAGAGCCAGCATTTGTTGTTCCCAACCATTTTACATATGCAAGCTTGTGCAACTATGAAGCATTTAGTTTTCAGGAAGCAAATCCATTGCCATGTAACCGAGGTTGGTATTGATTCTGTTGTCTATGTTTCAAATGTCCTCATGGGTGTCTATGCTAAATGTGGAAAGATAGAGGACTCTATGGACTTATTTTTAGGTGATGGAGAGAAGGCGTTGATGTTGTTTCAAGATATGCTTAGATGCCAAGTCGAGGCAACAGAAGTGACGTACTCTAGTGCTCTCCGTGCTTCTTCTGGCCTAGCAGCGTTGGAGCCAGGAGTTCAGATACATTCTGTAACTGTTTCATGGAATACCATGATCTTGGGATATTCTACACATCGCCTTGGCCTTGGGACTCTAATTTTTTTTGAAATGATGCAGGAAACAAATTGCAAATCAAACAAGTTAATTTTTGTTGGTGTCCTGTCAGCATGTAGCAATGCAGGACTGGAGACAAGCCATCTTGGTAAGGCTGCGAAGTTGATTCAGGAAATCCCATGTGAACCTAGTATTATAGTGTGGCGTGCTTTGCTTGGAGCTTGTGTTCTCCATAATGATATTGAACTTGGAAGGACGGCTGCCAAGCATGTTCTTGAAATGGATCCTCAGGATGAGGCGACCCATGTGTTATTGTCAAACATATATGCCACCGTGAAGAGATGGAATAATGTAGCGTATGTTATCAAAAACATGAAAAGGAAAGGAGTAAAGAAGGAACCTGGACATATTCCCAATTGTAATGCCATTTTGCTTGATGTGGCAGACGATGAAAAAAAGTGCCTCTTGTGGGTACACAGCGAAAGATTTGCTCTAGCATTTGGGCTGGATAGAGCACCATCTGCGAGCCCCATTCGTATCATAAAAAGTCTTCGGATATGTATGGATTGCGATGCCACAGTGAAGTTAATATCAAAGGTTGTGCAGCGAGATATTACTGTCAGAGATATCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

400

Amino Acids

44.32

Weight (kDa)

8.47

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	2 - 43	8.3e-06	PPR repeat family
PPR	PF01535	2 - 31	4.2e-06	PPR repeat
E_motif	PF20431	266 - 323	2.6e-19	E motif
DYW_deaminase	PF14432	323 - 398	1.1e-22	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13230
fragaria_vesca	FvH4_4g22970 FvH4_4g22970
malus_domestica	MD13G1127800.v1.1
prunus_persica	Prupe.1G218200_v2.0.a1
pyrus_communis	pycom13g11070 pycom16g10860 pycom16g10870
rosa_chinensis	RchiOBHm_Chr4g0429241
rosa_laevigata	RLG00000007086
rosa_multiflora	Rmu_sc0000054.1_g000027
rosa_roxburghii	Rroxscaffold_5G00370870
rosa_rugosa	Rorug04G0234000 Rorug04G0234100 Rorug04G0234200 Rorug04G0234300 Rorug04G0234400
rosa_samantha	Rh4AG290100 Rh4BG295800
rosa_wichuraiana	Rw4G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	4 cut(s)	87, 100, 842, 855
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	3 cut(s)	124, 476, 1038
AfiI	CCNNNNNNNGG	2 cut(s)	457, 1033
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	6 cut(s)	152, 339, 434, 617, 809, 842
AjnI	CCWGG	3 cut(s)	95, 520, 964
AloI	GAACNNNNNNTCC	2 cut(s)	774, 806
AluBI	AGCT	2 cut(s)	251, 785
AluI	AGCT	2 cut(s)	251, 785
Alw21I	GWGCWC	2 cut(s)	487, 1081
Alw26I	GTCTC	1 cut(s)	692
AlwI	GGATC	4 cut(s)	87, 100, 842, 855
AoxI	GGCC	3 cut(s)	98, 502, 592
ApeKI	GCWGC	4 cut(s)	509, 719, 824, 1168
AsuHPI	GGTGA	2 cut(s)	97, 416
AxyI	CCTNAGG	1 cut(s)	852
BamHI	GGATCC	2 cut(s)	92, 847
BanII	GRGCYC	1 cut(s)	1094
BbsI	GAAGAC	1 cut(s)	1106
Bbv12I	GWGCWC	2 cut(s)	487, 1081
BbvI	GCAGC	4 cut(s)	521, 706, 811, 1180
BccI	CCATC	5 cut(s)	13, 401, 714, 900, 1090
BceAI	ACGGC	1 cut(s)	837
BcgI	CGANNNNNNTGC	2 cut(s)	1034, 1068
BciT130I	CCWGG	3 cut(s)	97, 522, 966
BcoDI	GTCTC	1 cut(s)	692
BfaI	CTAG	4 cut(s)	480, 506, 753, 1058
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	4 cut(s)	510, 720, 825, 1169
BlsI	GCNGC	4 cut(s)	511, 721, 826, 1170
Bme1390I	CCNGG	3 cut(s)	97, 522, 966
BmiI	GGNNCC	5 cut(s)	94, 185, 519, 849, 963
BmrFI	CCNGG	3 cut(s)	97, 522, 966
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	4 cut(s)	160, 437, 612, 1126
BmuI	ACTGGG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	1106
BpmI	CTGGAG	1 cut(s)	716
BsaJI	CCNNGG	3 cut(s)	306, 589, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	774, 804
Bsc4I	CCNNNNNNNGG	2 cut(s)	457, 1033
Bse1I	ACTGG	2 cut(s)	19, 699
Bse21I	CCTNAGG	1 cut(s)	852
Bse3DI	GCAATG	2 cut(s)	292, 691
BseBI	CCWGG	3 cut(s)	97, 522, 966
BseDI	CCNNGG	3 cut(s)	306, 589, 595
BseGI	GGATG	2 cut(s)	24, 862
BseLI	CCNNNNNNNGG	2 cut(s)	457, 1033
BseMI	GCAATG	2 cut(s)	292, 691
BseMII	CTCAG	2 cut(s)	221, 866
BseNI	ACTGG	2 cut(s)	19, 699
BseXI	GCAGC	4 cut(s)	521, 706, 811, 1180
BsgI	GTGCAG	1 cut(s)	1187
BshFI	GGCC	3 cut(s)	100, 504, 594
BsiHKAI	GWGCWC	2 cut(s)	487, 1081
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	2 cut(s)	457, 1033
BsmAI	GTCTC	1 cut(s)	692
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	3 cut(s)	100, 504, 594
Bsp1286I	GDGCHC	3 cut(s)	487, 1081, 1094
Bsp143I	GATC	3 cut(s)	92, 564, 847
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	3 cut(s)	100, 504, 594
BspCNI	CTCAG	2 cut(s)	220, 865
BspLI	GGNNCC	5 cut(s)	94, 185, 519, 849, 963
BspPI	GGATC	4 cut(s)	87, 100, 842, 855
BspTI	CTTAAG	1 cut(s)	128
BsrDI	GCAATG	2 cut(s)	292, 691
BsrI	ACTGG	2 cut(s)	19, 699
BssECI	CCNNGG	3 cut(s)	306, 589, 595
BssMI	GATC	3 cut(s)	92, 564, 847
BssT1I	CCWWGG	2 cut(s)	589, 595
Bst2UI	CCWGG	3 cut(s)	97, 522, 966
Bst4CI	ACNGT	5 cut(s)	201, 547, 898, 1144, 1183
Bst6I	CTCTTC	2 cut(s)	74, 896
BstAFI	CTTAAG	1 cut(s)	128
BstAPI	GCANNNNNTGC	2 cut(s)	32, 1085
BstC8I	GCNNGC	4 cut(s)	215, 249, 771, 1090
BstDEI	CTNAG	3 cut(s)	207, 443, 852
BstF5I	GGATG	2 cut(s)	24, 862
BstKTI	GATC	3 cut(s)	95, 567, 850
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	3 cut(s)	92, 564, 847
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 491, 775, 1085
BstNI	CCWGG	3 cut(s)	97, 522, 966
BstNSI	RCATGY	3 cut(s)	30, 681, 836
BstSCI	CCNGG	3 cut(s)	95, 520, 964
BstV1I	GCAGC	4 cut(s)	521, 706, 811, 1180
BstV2I	GAAGAC	1 cut(s)	1106
BstX2I	RGATCY	2 cut(s)	92, 847
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstYI	RGATCY	2 cut(s)	92, 847
Bsu36I	CCTNAGG	1 cut(s)	852
BsuRI	GGCC	3 cut(s)	100, 504, 594
BtgZI	GCGATG	2 cut(s)	569, 1149
BtsCI	GGATG	2 cut(s)	24, 862
BtsIMutI	CAGTG	1 cut(s)	1149
Cac8I	GCNNGC	4 cut(s)	215, 249, 771, 1090
Csp6I	GTAC	3 cut(s)	123, 475, 1037
CviQI	GTAC	3 cut(s)	123, 475, 1037
DdeI	CTNAG	3 cut(s)	207, 443, 852
DpnI	GATC	3 cut(s)	94, 566, 849
DpnII	GATC	3 cut(s)	92, 564, 847
Eam1104I	CTCTTC	2 cut(s)	74, 896
EarI	CTCTTC	2 cut(s)	74, 896
Eco130I	CCWWGG	2 cut(s)	589, 595
Eco24I	GRGCYC	1 cut(s)	1094
Eco32I	GATATC	1 cut(s)	1192
Eco57I	CTGAAG	1 cut(s)	72
Eco81I	CCTNAGG	1 cut(s)	852
EcoRII	CCWGG	3 cut(s)	95, 520, 964
EcoRV	GATATC	1 cut(s)	1192
EcoT14I	CCWWGG	2 cut(s)	589, 595
EcoT38I	GRGCYC	1 cut(s)	1094
ErhI	CCWWGG	2 cut(s)	589, 595
FalI	AAGNNNNNCTT	4 cut(s)	426, 458, 1013, 1045
FaqI	GGGAC	1 cut(s)	613
FauNDI	CATATG	1 cut(s)	243
Fnu4HI	GCNGC	4 cut(s)	510, 720, 825, 1169
FokI	GGATG	2 cut(s)	31, 869
FriOI	GRGCYC	1 cut(s)	1094
Fsp4HI	GCNGC	4 cut(s)	510, 720, 825, 1169
FspBI	CTAG	4 cut(s)	480, 506, 753, 1058
GluI	GCNGC	4 cut(s)	510, 720, 825, 1169
GsuI	CTGGAG	1 cut(s)	716
HaeIII	GGCC	3 cut(s)	100, 504, 594
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	4 cut(s)	320, 383, 601, 730
HphI	GGTGA	2 cut(s)	97, 416
Hpy166II	GTNNAC	2 cut(s)	749, 1039
Hpy188I	TCNGA	5 cut(s)	52, 210, 531, 1119, 1187
Hpy188III	TCNNGA	6 cut(s)	75, 280, 434, 734, 839, 854
Hpy8I	GTNNAC	2 cut(s)	749, 1039
HpyAV	CCTTC	3 cut(s)	409, 810, 952
HpyCH4III	ACNGT	5 cut(s)	201, 547, 898, 1144, 1183
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	6 cut(s)	247, 257, 625, 639, 689, 1168
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 491, 775, 1085
HpyF3I	CTNAG	3 cut(s)	207, 443, 852
HpySE526I	ACGT	1 cut(s)	473
Kzo9I	GATC	3 cut(s)	92, 564, 847
LmnI	GCTCC	3 cut(s)	183, 517, 782
Lsp1109I	GCAGC	4 cut(s)	521, 706, 811, 1180
LweI	GCATC	4 cut(s)	160, 437, 612, 1126
MaeI	CTAG	4 cut(s)	480, 506, 753, 1058
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	3 cut(s)	301, 469, 541
MalI	GATC	3 cut(s)	94, 566, 849
MboI	GATC	3 cut(s)	92, 564, 847
MboII	GAAGA	5 cut(s)	61, 65, 489, 913, 1106
MfeI	CAATTG	1 cut(s)	979
MflI	RGATCY	2 cut(s)	92, 847
MhlI	GDGCHC	3 cut(s)	487, 1081, 1094
MluCI	AATT	5 cut(s)	106, 606, 634, 654, 979
MlyI	GAGTC	2 cut(s)	377, 595
MmeI	TCCRAC	1 cut(s)	495
MseI	TTAA	3 cut(s)	129, 653, 1151
MslI	CAYNNNNRTG	1 cut(s)	297
MspCI	CTTAAG	1 cut(s)	128
MspR9I	CCNGG	3 cut(s)	97, 522, 966
MunI	CAATTG	1 cut(s)	979
MvaI	CCWGG	3 cut(s)	97, 522, 966
MwoI	GCNNNNNNNGC	4 cut(s)	32, 491, 775, 1085
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	3 cut(s)	92, 564, 847
NlaIV	GGNNCC	5 cut(s)	94, 185, 519, 849, 963
NmeAIII	GCCGAG	2 cut(s)	61, 118
NmuCI	GTSAC	1 cut(s)	469
NspI	RCATGY	3 cut(s)	30, 681, 836
PfeI	GAWTC	2 cut(s)	320, 730
PkrI	GCNGC	4 cut(s)	511, 721, 826, 1170
PleI	GAGTC	2 cut(s)	377, 595
PpsI	GAGTC	2 cut(s)	377, 595
Psp6I	CCWGG	3 cut(s)	95, 520, 964
PspGI	CCWGG	3 cut(s)	95, 520, 964
PspN4I	GGNNCC	5 cut(s)	94, 185, 519, 849, 963
PsuI	RGATCY	2 cut(s)	92, 847
RsaI	GTAC	3 cut(s)	124, 476, 1038
RsaNI	GTAC	3 cut(s)	123, 475, 1037
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	129, 653, 1151
SatI	GCNGC	4 cut(s)	510, 720, 825, 1169
Sau3AI	GATC	3 cut(s)	92, 564, 847
SchI	GAGTC	2 cut(s)	377, 595
ScrFI	CCNGG	3 cut(s)	97, 522, 966
SduI	GDGCHC	3 cut(s)	487, 1081, 1094
SetI	ASST	8 cut(s)	253, 312, 406, 476, 754, 787, 967, 1164
SfaNI	GCATC	4 cut(s)	160, 437, 612, 1126
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	5 cut(s)	106, 606, 634, 654, 979
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	4 cut(s)	480, 506, 753, 1058
StyD4I	CCNGG	3 cut(s)	95, 520, 964
StyI	CCWWGG	2 cut(s)	589, 595
TaaI	ACNGT	5 cut(s)	201, 547, 898, 1144, 1183
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	2 cut(s)	76, 456
TasI	AATT	5 cut(s)	106, 606, 634, 654, 979
TfiI	GAWTC	2 cut(s)	320, 730
Tru1I	TTAA	3 cut(s)	129, 653, 1151
Tru9I	TTAA	3 cut(s)	129, 653, 1151
TscAI	CASTG	1 cut(s)	1149
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	4 cut(s)	509, 719, 824, 1168
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	4 cut(s)	278, 540, 953, 1029
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	1149
Vha464I	CTTAAG	1 cut(s)	128
XceI	RCATGY	3 cut(s)	30, 681, 836
XspI	CTAG	4 cut(s)	480, 506, 753, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.