pycom16g12490

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015600
Physical Location & Seq
Forward (+)
8797784 .. 8798662
879 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 879 bp
ATGACGAACACATTCGGATCGATCGATCTATCTGCCCATGTGGGGCCTCGCTTCAAGTGTCCCTTTCCAAGTGCATTTTATGCGGTTTTTGACGGTCACGGAGGGCCAGAGGCAGCTGCTTATATCAAGAGGAATGCCATGAGACTATTCTTTGAAGATGCTGATTTACCACAGAGAATGGATATGGATGCTGTTTTCTTCAGAGAGTTGGAGAATTCCCACAGGAAAGCATTTCTACTGGCAGACCATGCCTTGGCTGATGAACAAAGTGTGAGAAGTTCGTGTGGAACAACAGCATTGACTGCTCTTATACTTGGAAGGCATTTAATGGTTGCAAATGCTGGTGACTGTCGAGCGGTTCTTTGCAGGAAAGGAATAGCAGTTGACATGTCTCAAGATCATAGACCTAGTTACTTGCCGGAACGTATGCGAGTTGAGGAGTTGGGTGGTTCCATTGATGATGGATATCTTAACGGTTCTATCTCAGTCACCCGAGCTCTTGGAGATTGGGGCTTAAAATTACCATTGGGTTCCTCATCGCCTCTCATTGCCGAGCCAGATGTTCAGCAGGTTATGTTAACAGAAGATGATGAGTTTTTTATCATTGGTTGTGATGGGATCTGGGATGTCATGTCAAGCCAATATGCTGTCAGCCTGGTTCGGCGTGGGCTGAGGAGGCACAATGACCCCCAACAGTGTGCCAAAGAGCTCGTCAAGGAAGCACTGCGCCTCAACACATCAGACAACCTCACAGTTATTATTGTGCGCCTCTCTACTCCAGAACGTGTTGAGTTCCCTCGCCAGCGCCCGAGGTTGAGAACCTGCAACCTCTCGGAGGAAGCACGCAGCCGGCTGAGAAGCTTGTTAGAAGGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

293

Amino Acids

32.56

Weight (kDa)

6.01

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 23 - 249 8.8e-62 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015600)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g20910
malus_domestica MD13G1147300.v1.1 MD16G1145700.v1.1
prunus_persica Prupe.1G110800_v2.0.a1
pyrus_communis pycom16g12490
rosa_chinensis RchiOBHm_Chr4g0426341
rosa_laevigata RLG00000007301
rosa_multiflora Rmu_sc0007942.1_g000010 Rmu_sc0020213.1_g000001
rosa_roxburghii Rroxscaffold_5G00368350
rosa_rugosa Rorug04G0210300
rosa_samantha Rh4AG267300 Rh4BG273200 Rh4CG287400 Rh4DG269900
rosa_wichuraiana Rw4G023160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 559, 830
AccB7I CCANNNNNTGG 1 cut(s) 253
AccBSI CCGCTC 1 cut(s) 356
AciI CCGC 2 cut(s) 83, 356
AclWI GGATC 2 cut(s) 25, 626
AcsI RAATTY 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 184
AfiI CCNNNNNNNGG 3 cut(s) 42, 253, 835
AflIII ACRYGT 2 cut(s) 387, 784
AgsI TTSAA 2 cut(s) 55, 155
AjnI CCWGG 1 cut(s) 654
AluBI AGCT 4 cut(s) 116, 497, 709, 861
AluI AGCT 4 cut(s) 116, 497, 709, 861
Alw21I GWGCWC 2 cut(s) 499, 711
Alw26I GTCTC 2 cut(s) 136, 396
AlwI GGATC 2 cut(s) 25, 626
Ama87I CYCGRG 2 cut(s) 492, 808
AoxI GGCC 2 cut(s) 44, 104
ApeKI GCWGC 3 cut(s) 113, 116, 846
ApoI RAATTY 1 cut(s) 214
ArsI GACNNNNNNTTYG 2 cut(s) 696, 728
Asp700I GAANNNNTTC 1 cut(s) 11
AspLEI GCGC 3 cut(s) 729, 768, 807
AspS9I GGNCC 2 cut(s) 44, 104
AsuHPI GGTGA 2 cut(s) 356, 481
AvaI CYCGRG 2 cut(s) 492, 808
BanII GRGCYC 2 cut(s) 499, 711
Bbv12I GWGCWC 2 cut(s) 499, 711
BbvCI CCTCAGC 1 cut(s) 671
BbvI GCAGC 3 cut(s) 103, 125, 858
BccI CCATC 2 cut(s) 455, 608
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 1 cut(s) 656
BcoDI GTCTC 2 cut(s) 136, 396
BfaI CTAG 1 cut(s) 408
BfoI RGCGCY 1 cut(s) 808
BfuAI ACCTGC 2 cut(s) 559, 830
BisI GCNGC 3 cut(s) 114, 117, 847
BlsI GCNGC 3 cut(s) 115, 118, 848
Bme1390I CCNGG 1 cut(s) 656
BmeT110I CYCGRG 2 cut(s) 492, 808
BmgT120I GGNCC 2 cut(s) 44, 104
BmiI GGNNCC 3 cut(s) 45, 451, 532
BmrFI CCNGG 1 cut(s) 656
BmsI GCATC 2 cut(s) 148, 178
BpmI CTGGAG 1 cut(s) 762
Bpu10I CCTNAGC 1 cut(s) 671
BpuEI CTTGAG 1 cut(s) 378
Bsa29I ATCGAT 2 cut(s) 20, 24
BsaBI GATNNNNATC 1 cut(s) 465
BsaJI CCNNGG 2 cut(s) 252, 809
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 253, 835
Bse118I RCCGGY 1 cut(s) 849
Bse1I ACTGG 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 546
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 1 cut(s) 656
BseCI ATCGAT 2 cut(s) 20, 24
BseDI CCNNGG 2 cut(s) 252, 809
BseGI GGATG 2 cut(s) 193, 631
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 3 cut(s) 42, 253, 835
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 3 cut(s) 498, 662, 845
BseNI ACTGG 1 cut(s) 243
BseRI GAGGAG 2 cut(s) 452, 688
BseXI GCAGC 3 cut(s) 103, 125, 858
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 2 cut(s) 46, 106
BshVI ATCGAT 2 cut(s) 20, 24
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 2 cut(s) 499, 711
BsiHKCI CYCGRG 2 cut(s) 492, 808
BsiSI CCGG 2 cut(s) 419, 850
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 3 cut(s) 42, 253, 835
BsmAI GTCTC 2 cut(s) 136, 396
BsmFI GGGAC 1 cut(s) 45
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 2 cut(s) 46, 106
BsoBI CYCGRG 2 cut(s) 492, 808
Bsp1286I GDGCHC 2 cut(s) 499, 711
Bsp143I GATC 5 cut(s) 17, 21, 25, 397, 618
BspACI CCGC 2 cut(s) 83, 356
BspANI GGCC 2 cut(s) 46, 106
BspCNI CTCAG 3 cut(s) 497, 663, 846
BspDI ATCGAT 2 cut(s) 20, 24
BspLI GGNNCC 3 cut(s) 45, 451, 532
BspMI ACCTGC 2 cut(s) 559, 830
BspPI GGATC 2 cut(s) 25, 626
BsrBI CCGCTC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 546
BsrFI RCCGGY 1 cut(s) 849
BsrI ACTGG 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 849
BssECI CCNNGG 2 cut(s) 252, 809
BssMI GATC 5 cut(s) 17, 21, 25, 397, 618
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 656
Bst4CI ACNGT 5 cut(s) 95, 350, 476, 696, 754
BstAPI GCANNNNNTGC 3 cut(s) 80, 248, 302
BstC8I GCNNGC 3 cut(s) 803, 844, 851
BstDEI CTNAG 3 cut(s) 484, 671, 854
BstENI CCTNNNNNAGG 1 cut(s) 833
BstF5I GGATG 2 cut(s) 193, 631
BstH2I RGCGCY 1 cut(s) 808
BstHHI GCGC 3 cut(s) 729, 768, 807
BstKTI GATC 5 cut(s) 20, 24, 28, 400, 621
BstMAI GTCTC 2 cut(s) 136, 396
BstMBI GATC 5 cut(s) 17, 21, 25, 397, 618
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 4 cut(s) 80, 248, 302, 676
BstNI CCWGG 1 cut(s) 656
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 654
BstV1I GCAGC 3 cut(s) 103, 125, 858
BstX2I RGATCY 1 cut(s) 618
BstYI RGATCY 1 cut(s) 618
Bsu15I ATCGAT 2 cut(s) 20, 24
BsuRI GGCC 2 cut(s) 46, 106
BsuTUI ATCGAT 2 cut(s) 20, 24
BtgZI GCGATG 1 cut(s) 522
BtsCI GGATG 2 cut(s) 193, 631
BtsI GCAGTG 1 cut(s) 722
BtsIMutI CAGTG 2 cut(s) 701, 722
BveI ACCTGC 2 cut(s) 559, 830
Cac8I GCNNGC 3 cut(s) 803, 844, 851
CfoI GCGC 3 cut(s) 729, 768, 807
Cfr10I RCCGGY 1 cut(s) 849
Cfr13I GGNCC 2 cut(s) 44, 104
ClaI ATCGAT 2 cut(s) 20, 24
CviAII CATG 5 cut(s) 38, 139, 248, 388, 631
DdeI CTNAG 3 cut(s) 484, 671, 854
DpnI GATC 5 cut(s) 19, 23, 27, 399, 620
DpnII GATC 5 cut(s) 17, 21, 25, 397, 618
Ecl136II GAGCTC 2 cut(s) 497, 709
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 2 cut(s) 499, 711
Eco32I GATATC 1 cut(s) 467
Eco53kI GAGCTC 2 cut(s) 497, 709
Eco57I CTGAAG 1 cut(s) 184
Eco88I CYCGRG 2 cut(s) 492, 808
EcoICRI GAGCTC 2 cut(s) 497, 709
EcoNI CCTNNNNNAGG 1 cut(s) 833
EcoO109I RGGNCCY 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 654
EcoRV GATATC 1 cut(s) 467
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 2 cut(s) 499, 711
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 5 cut(s) 41, 142, 251, 391, 634
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FaqI GGGAC 1 cut(s) 45
FatI CATG 5 cut(s) 37, 138, 247, 387, 630
Fnu4HI GCNGC 3 cut(s) 114, 117, 847
FokI GGATG 2 cut(s) 200, 638
FriOI GRGCYC 2 cut(s) 499, 711
Fsp4HI GCNGC 3 cut(s) 114, 117, 847
FspBI CTAG 1 cut(s) 408
GlaI GCGC 3 cut(s) 728, 767, 806
GluI GCNGC 3 cut(s) 114, 117, 847
GsuI CTGGAG 1 cut(s) 762
HaeII RGCGCY 1 cut(s) 808
HaeIII GGCC 2 cut(s) 46, 106
HapII CCGG 2 cut(s) 419, 850
HhaI GCGC 3 cut(s) 729, 768, 807
Hin1II CATG 5 cut(s) 41, 142, 251, 391, 634
Hin6I GCGC 3 cut(s) 727, 766, 805
HinP1I GCGC 3 cut(s) 727, 766, 805
HincII GTYRAC 2 cut(s) 385, 579
HindII GTYRAC 2 cut(s) 385, 579
HindIII AAGCTT 1 cut(s) 859
HpaI GTTAAC 1 cut(s) 579
HpaII CCGG 2 cut(s) 419, 850
HphI GGTGA 2 cut(s) 356, 481
Hpy166II GTNNAC 2 cut(s) 385, 579
Hpy188I TCNGA 4 cut(s) 17, 203, 742, 835
Hpy188III TCNNGA 3 cut(s) 127, 395, 779
Hpy8I GTNNAC 2 cut(s) 385, 579
HpyAV CCTTC 2 cut(s) 312, 863
HpyCH4III ACNGT 5 cut(s) 95, 350, 476, 696, 754
HpyCH4IV ACGT 2 cut(s) 424, 784
HpyCH4V TGCA 4 cut(s) 74, 335, 366, 825
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 248, 302, 676
HpyF3I CTNAG 3 cut(s) 484, 671, 854
HpySE526I ACGT 2 cut(s) 424, 784
Hsp92II CATG 5 cut(s) 41, 142, 251, 391, 634
HspAI GCGC 3 cut(s) 727, 766, 805
KroI GCCGGC 1 cut(s) 849
KroNI GCCGGC 1 cut(s) 851
KspAI GTTAAC 1 cut(s) 579
Kzo9I GATC 5 cut(s) 17, 21, 25, 397, 618
Lsp1109I GCAGC 3 cut(s) 103, 125, 858
LweI GCATC 2 cut(s) 148, 178
MaeI CTAG 1 cut(s) 408
MaeII ACGT 2 cut(s) 424, 784
MaeIII GTNAC 4 cut(s) 95, 344, 410, 487
MalI GATC 5 cut(s) 19, 23, 27, 399, 620
MbiI CCGCTC 1 cut(s) 356
MboI GATC 5 cut(s) 17, 21, 25, 397, 618
MboII GAAGA 3 cut(s) 167, 190, 596
MfeI CAATTG 1 cut(s) 874
MflI RGATCY 1 cut(s) 618
MhlI GDGCHC 2 cut(s) 499, 711
MluCI AATT 3 cut(s) 214, 518, 874
MmeI TCCRAC 1 cut(s) 189
MroNI GCCGGC 1 cut(s) 849
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 4 cut(s) 326, 471, 515, 578
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 2 cut(s) 419, 850
MspR9I CCNGG 1 cut(s) 656
MunI CAATTG 1 cut(s) 874
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 656
MwoI GCNNNNNNNGC 4 cut(s) 80, 248, 302, 676
NaeI GCCGGC 1 cut(s) 851
NdeII GATC 5 cut(s) 17, 21, 25, 397, 618
NgoMIV GCCGGC 1 cut(s) 849
NlaIII CATG 5 cut(s) 41, 142, 251, 391, 634
NlaIV GGNNCC 3 cut(s) 45, 451, 532
NmeAIII GCCGAG 1 cut(s) 577
NmuCI GTSAC 3 cut(s) 95, 344, 487
NspI RCATGY 1 cut(s) 391
PciI ACATGT 1 cut(s) 387
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PctI GAATGC 1 cut(s) 139
PdiI GCCGGC 1 cut(s) 851
PdmI GAANNNNTTC 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 253
PkrI GCNGC 3 cut(s) 115, 118, 848
Ple19I CGATCG 1 cut(s) 24
PscI ACATGT 1 cut(s) 387
Psp124BI GAGCTC 2 cut(s) 499, 711
Psp6I CCWGG 1 cut(s) 654
PspGI CCWGG 1 cut(s) 654
PspN4I GGNNCC 3 cut(s) 45, 451, 532
PspPI GGNCC 2 cut(s) 44, 104
PsuI RGATCY 1 cut(s) 618
PvuI CGATCG 1 cut(s) 24
PvuII CAGCTG 1 cut(s) 116
SacI GAGCTC 2 cut(s) 499, 711
SaqAI TTAA 4 cut(s) 326, 471, 515, 578
SatI GCNGC 3 cut(s) 114, 117, 847
Sau3AI GATC 5 cut(s) 17, 21, 25, 397, 618
Sau96I GGNCC 2 cut(s) 44, 104
ScrFI CCNGG 1 cut(s) 656
SduI GDGCHC 2 cut(s) 499, 711
SfaNI GCATC 2 cut(s) 148, 178
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
Sse9I AATT 3 cut(s) 214, 518, 874
SsiI CCGC 2 cut(s) 83, 356
SspMI CTAG 1 cut(s) 408
SstI GAGCTC 2 cut(s) 499, 711
StyD4I CCNGG 1 cut(s) 654
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 5 cut(s) 95, 350, 476, 696, 754
TaiI ACGT 2 cut(s) 427, 787
TaqI TCGA 3 cut(s) 20, 24, 352
TasI AATT 3 cut(s) 214, 518, 874
Tru1I TTAA 4 cut(s) 326, 471, 515, 578
Tru9I TTAA 4 cut(s) 326, 471, 515, 578
TscAI CASTG 2 cut(s) 701, 729
TseFI GTSAC 3 cut(s) 95, 344, 487
TseI GCWGC 3 cut(s) 113, 116, 846
Tsp45I GTSAC 3 cut(s) 95, 344, 487
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 2 cut(s) 701, 729
Van91I CCANNNNNTGG 1 cut(s) 253
XagI CCTNNNNNAGG 1 cut(s) 833
XapI RAATTY 1 cut(s) 214
XceI RCATGY 1 cut(s) 391
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.