pycom16g12630

Nuclear export mediator factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013357
Physical Location & Seq
Reverse (-)
8879052 .. 8880401
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 729 bp
ATGAAAGAGAAGTATGCTGATCAGGATGAGGAAGAAAGATCGATCCGTATGGCTTTACTAGCTACTGCTGGAAGAGTAAAGAAGTATGGAGAGTCCCAAAATGAAACTTCAGCTCCAGCTGAAGATAAGAAACCAAGTCCTGAAGATACTCCAAAAATATGTTATAGATGTAAAAAGGTAGGTCATCTGTCCCGGGATTGTCCAGAACATCAAGATGGTACATTACATGGTCATGCAAATGGCGGAGTTGAAGATGACCCTCCTGTGGATTTGGATAAATCTACTTCTGAAGTTGACAAGGTGACAATGGAGGAGGATGATATTAATGAGATAGGTGAAGAAGAGAAGGAGAGATTAAACGATGTCGATTACTTGACTGGCAATCCACTGTCCAGTGATATTCTCTTATATGCGGTACCTGTCTGTGGTCCTTATAGCTCAGTCCAGTCTTACAAATATCATGTGAAGATAGTTCCTGGCTCTGTGAAGAGAGGGAAAGCTGCAAAAACTGTCATGAATCTGTTTAGCCACAGGCCGGAAGCAACGGTTAGACAGAAAGAGTTGATGAAAGCGTGTACTGATCCTGAACTGGTCGCTGCCATTATCGGCAATGTGAAGATAACATCTGCAGGCCTTTCTCAGTTGAAGCAGAACCAAAGAAAGTCAAGAAGGGCAGCAGCAAAGCTAAGTAGGAAGCTTAAACAGCTTCGTGCTGCGTCAGTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006913 GO:0008150 GO:0046907 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3441 DUF814 FbpA zf-CCHC

Protein Analysis

243

Amino Acids

26.79

Weight (kDa)

7.63

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 53 - 69 9e-07 Zinc knuckle
NFACT-C PF11923 116 - 208 6.7e-27 NFACT protein C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49930
fragaria_vesca FvH4_4g20770 FvH4_4g20770 FvH4_4g20770
malus_domestica MD13G1148000.v1.1 MD16G1147800.v1.1
prunus_persica Prupe.1G111500_v2.0.a1
pyrus_communis pycom13g12740 pycom16g12630
rosa_chinensis RchiOBHm_Chr4g0426211
rosa_laevigata RLG00000007310
rosa_roxburghii Rroxscaffold_5G00368230
rosa_rugosa Rorug04G0209600
rosa_samantha Rh4AG266500 Rh4BG272500 Rh4CG285700 Rh4DG268800
rosa_wichuraiana Rw4G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 415
AccB1I GGYRCC 1 cut(s) 415
AciI CCGC 2 cut(s) 243, 413
AclWI GGATC 2 cut(s) 37, 575
AcuI CTGAAG 4 cut(s) 93, 141, 162, 309
AfaI GTAC 3 cut(s) 220, 417, 577
AfiI CCNNNNNNNGG 3 cut(s) 265, 425, 535
AgsI TTSAA 2 cut(s) 251, 646
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 8 cut(s) 62, 113, 119, 438, 500, 685, 697, 706
AluI AGCT 8 cut(s) 62, 113, 119, 438, 500, 685, 697, 706
AlwI GGATC 2 cut(s) 37, 575
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 2 cut(s) 533, 631
ApeKI GCWGC 5 cut(s) 500, 596, 674, 677, 713
AseI ATTAAT 1 cut(s) 324
Asp718I GGTACC 1 cut(s) 415
AspS9I GGNCC 1 cut(s) 428
AsuC2I CCSGG 2 cut(s) 193, 194
AsuHPI GGTGA 2 cut(s) 313, 347
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 1 cut(s) 428
BanI GGYRCC 1 cut(s) 415
BbvI GCAGC 5 cut(s) 487, 583, 686, 689, 700
BccI CCATC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 477
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 2 cut(s) 193, 194
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 627
BisI GCNGC 5 cut(s) 501, 597, 675, 678, 714
BlsI GCNGC 5 cut(s) 502, 598, 676, 679, 715
Bme1390I CCNGG 3 cut(s) 193, 194, 477
Bme18I GGWCC 1 cut(s) 428
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 3 cut(s) 193, 194, 477
BpmI CTGGAG 1 cut(s) 99
BpuMI CCSGG 2 cut(s) 193, 194
Bsa29I ATCGAT 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 3 cut(s) 265, 425, 535
Bse1I ACTGG 4 cut(s) 382, 393, 445, 594
Bse3DI GCAATG 1 cut(s) 616
BseBI CCWGG 1 cut(s) 477
BseCI ATCGAT 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 2 cut(s) 31, 322
BseLI CCNNNNNNNGG 3 cut(s) 265, 425, 535
BseMI GCAATG 1 cut(s) 616
BseMII CTCAG 2 cut(s) 453, 653
BseNI ACTGG 4 cut(s) 382, 393, 445, 594
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 5 cut(s) 487, 583, 686, 689, 700
BshFI GGCC 2 cut(s) 535, 633
BshNI GGYRCC 1 cut(s) 415
BshVI ATCGAT 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 2 cut(s) 193, 536
BslFI GGGAC 2 cut(s) 79, 175
BslI CCNNNNNNNGG 3 cut(s) 265, 425, 535
BsmFI GGGAC 2 cut(s) 79, 175
BsnI GGCC 2 cut(s) 535, 633
BsoBI CYCGRG 1 cut(s) 192
Bsp143I GATC 4 cut(s) 19, 38, 42, 580
BspACI CCGC 2 cut(s) 243, 413
BspANI GGCC 2 cut(s) 535, 633
BspCNI CTCAG 2 cut(s) 452, 652
BspDI ATCGAT 1 cut(s) 41
BspHI TCATGA 1 cut(s) 513
BspLI GGNNCC 1 cut(s) 417
BspMAI CTGCAG 1 cut(s) 631
BspPI GGATC 2 cut(s) 37, 575
BspT107I GGYRCC 1 cut(s) 415
BsrDI GCAATG 1 cut(s) 616
BsrI ACTGG 4 cut(s) 382, 393, 445, 594
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 4 cut(s) 19, 38, 42, 580
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 3 cut(s) 390, 511, 547
Bst6I CTCTTC 3 cut(s) 67, 336, 482
BstC8I GCNNGC 1 cut(s) 631
BstDEI CTNAG 3 cut(s) 439, 639, 686
BstF5I GGATG 2 cut(s) 31, 322
BstKTI GATC 4 cut(s) 22, 41, 45, 583
BstMBI GATC 4 cut(s) 19, 38, 42, 580
BstMWI GCNNNNNNNGC 2 cut(s) 59, 703
BstNI CCWGG 1 cut(s) 477
BstSCI CCNGG 3 cut(s) 191, 192, 475
BstSFI CTRYAG 1 cut(s) 627
BstV1I GCAGC 5 cut(s) 487, 583, 686, 689, 700
Bsu15I ATCGAT 1 cut(s) 41
BsuRI GGCC 2 cut(s) 535, 633
BsuTUI ATCGAT 1 cut(s) 41
BtsCI GGATG 2 cut(s) 31, 322
BtsIMutI CAGTG 2 cut(s) 386, 400
Cac8I GCNNGC 1 cut(s) 631
CciI TCATGA 1 cut(s) 513
Cfr13I GGNCC 1 cut(s) 428
Cfr9I CCCGGG 1 cut(s) 192
ClaI ATCGAT 1 cut(s) 41
CseI GACGC 1 cut(s) 705
Csp6I GTAC 3 cut(s) 219, 416, 576
CviAII CATG 4 cut(s) 227, 233, 461, 514
CviQI GTAC 3 cut(s) 219, 416, 576
DdeI CTNAG 3 cut(s) 439, 639, 686
DpnI GATC 4 cut(s) 21, 40, 44, 582
DpnII GATC 4 cut(s) 19, 38, 42, 580
Eam1104I CTCTTC 3 cut(s) 67, 336, 482
EarI CTCTTC 3 cut(s) 67, 336, 482
EciI GGCGGA 1 cut(s) 258
Eco147I AGGCCT 1 cut(s) 633
Eco47I GGWCC 1 cut(s) 428
Eco57I CTGAAG 4 cut(s) 93, 141, 162, 309
Eco88I CYCGRG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 475
FaeI CATG 4 cut(s) 230, 236, 464, 517
FaqI GGGAC 2 cut(s) 79, 175
FatI CATG 4 cut(s) 226, 232, 460, 513
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 5 cut(s) 501, 597, 675, 678, 714
FokI GGATG 2 cut(s) 38, 329
Fsp4HI GCNGC 5 cut(s) 501, 597, 675, 678, 714
FspBI CTAG 1 cut(s) 59
GluI GCNGC 5 cut(s) 501, 597, 675, 678, 714
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 2 cut(s) 535, 633
HapII CCGG 2 cut(s) 193, 536
HgaI GACGC 1 cut(s) 705
Hin1II CATG 4 cut(s) 230, 236, 464, 517
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 2 cut(s) 92, 517
HpaII CCGG 2 cut(s) 193, 536
HphI GGTGA 2 cut(s) 313, 347
Hpy166II GTNNAC 2 cut(s) 295, 576
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 7 cut(s) 23, 140, 203, 212, 514, 584, 666
Hpy8I GTNNAC 2 cut(s) 295, 576
HpyAV CCTTC 2 cut(s) 340, 663
HpyCH4III ACNGT 3 cut(s) 390, 511, 547
HpyCH4V TGCA 3 cut(s) 236, 503, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 703
HpyF3I CTNAG 3 cut(s) 439, 639, 686
Hsp92II CATG 4 cut(s) 230, 236, 464, 517
KpnI GGTACC 1 cut(s) 419
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 4 cut(s) 19, 38, 42, 580
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 5 cut(s) 487, 583, 686, 689, 700
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 301
MalI GATC 4 cut(s) 21, 40, 44, 582
MboI GATC 4 cut(s) 19, 38, 42, 580
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 5 cut(s) 22, 270, 304, 307, 485
MseI TTAA 3 cut(s) 324, 356, 699
MslI CAYNNNNRTG 3 cut(s) 213, 231, 237
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 2 cut(s) 193, 536
MspR9I CCNGG 3 cut(s) 193, 194, 477
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 2 cut(s) 59, 703
NciI CCSGG 2 cut(s) 193, 194
NdeII GATC 4 cut(s) 19, 38, 42, 580
NlaIII CATG 4 cut(s) 230, 236, 464, 517
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 1 cut(s) 301
PagI TCATGA 1 cut(s) 513
PceI AGGCCT 1 cut(s) 633
PfeI GAWTC 1 cut(s) 517
PkrI GCNGC 5 cut(s) 502, 598, 676, 679, 715
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PshBI ATTAAT 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 1 cut(s) 428
PstI CTGCAG 1 cut(s) 631
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 3 cut(s) 220, 417, 577
RsaNI GTAC 3 cut(s) 219, 416, 576
RseI CAYNNNNRTG 3 cut(s) 213, 231, 237
SaqAI TTAA 3 cut(s) 324, 356, 699
SatI GCNGC 5 cut(s) 501, 597, 675, 678, 714
Sau3AI GATC 4 cut(s) 19, 38, 42, 580
Sau96I GGNCC 1 cut(s) 428
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 3 cut(s) 193, 194, 477
SfcI CTRYAG 1 cut(s) 627
SinI GGWCC 1 cut(s) 428
SmaI CCCGGG 1 cut(s) 194
SmiMI CAYNNNNRTG 3 cut(s) 213, 231, 237
SseBI AGGCCT 1 cut(s) 633
SsiI CCGC 2 cut(s) 243, 413
SspMI CTAG 1 cut(s) 59
StuI AGGCCT 1 cut(s) 633
StyD4I CCNGG 3 cut(s) 191, 192, 475
TaaI ACNGT 3 cut(s) 390, 511, 547
TaqI TCGA 2 cut(s) 41, 366
TatI WGTACW 1 cut(s) 575
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 3 cut(s) 324, 356, 699
Tru9I TTAA 3 cut(s) 324, 356, 699
TscAI CASTG 2 cut(s) 393, 400
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 5 cut(s) 500, 596, 674, 677, 713
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 4 cut(s) 17, 117, 530, 581
TspGWI ACGGA 1 cut(s) 35
TspMI CCCGGG 1 cut(s) 192
TspRI CASTG 2 cut(s) 393, 400
VpaK11BI GGWCC 1 cut(s) 428
VspI ATTAAT 1 cut(s) 324
XmaI CCCGGG 1 cut(s) 192
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.