RchiOBHm_Chr4g0426211

Nuclear export mediator factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0013357
Physical Location & Seq
Forward (+)
51757552 .. 51764468
6917 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39528

Sequence Viewer

Length: 3402 bp
ATGGTGAAGGTGCGGATGAACACGGCCGACGTGGCCGCCGAGGTCAAGTGCTTGCGGCGGCTTATCGGCATGCGCTGCGCCAATGTCTACGATCTCTCTCCCAAGACCTATATGTTGAAGCTTATGAACAGTAGCGGCGTCACCGAGTCCGGCGAGAGCGAGAAGGTCTTCTTGCTTATCGAAAGCGGCGTCAGATTGCACACTACTGCCTATGTTCGGGACAAGAGTAATACTCCGTCTGGTTTTACGCTCAAAATAAGGAAGCATATACGAACAAGAAGGCTCGAGGATGTGAGGCAGCTGGGATATGATCGGATTATACTATTTCAGTTTGGATTGGGTGCTAATGCCTACTATGTTATATTGGAGCTATATGCGCAAGGAAATATTATTCTTGCAGATTCCGAATATATGGTCATGACTCTTCTTCGCTCGCATAGGGATGATGACAAAGGGGTTGCAATTATGTCACGCCATCATTATCCAATAGAGATTTGTCGAGTTTTTGAGCGAACAACCGCTGCAAAGTTGCAGGAAGCCCTTACATATTCCAAGGAACCTGATAACAATGAATCTGTAAAAGATTCTGAAGGTCGAAATGATGCATCTGATGCGCCAAAAGAAAAAAAGGGTGGTCGTAAAGGTGGGAAGCCCGTTGAGTCCAGTAAAAAGCCTGGTGATGCTAAAGCCAAACAAGCCACTTTGAAGAATGTTCTAGGGGACGGACTGGGCTATGGACCTGCCCTTTCTGAGCATATTATTTTAGATGCTGGTCTTGTTCCAAATACTAAAGTTGGTAAAGATGAAAAGCTAGATGACAATACACTAAAGCTTTTGCTTGAAGCTGTTACAAAATTTGAGGACTGGCTGCATGATGTTATATCCGGTGAAAAAGTTCCTGAAGGATACATTTTGATGCAGCACAAAAATTCAGGGAAGAATGGTCCCCCATCTGAACCAGGAAGTTCTGGCCAGATATATGATGAATTCTGCCCCATATTATTGAACCAATTCAAGTCGAGGGAGTATGTGCAGTTTGAAACATTTGATGCATCCTTGGATGAGTTCTATAGCAAAATTGAGAGTCAAAGGTCAGAGCAGCAGCAAAAAGCAAAAGAGAGCTCTGCCACCCAGAGGCTTAATAAAATCCGCGTGGATCAGGAAAATCGTGTGCATATGTTAAGGAAAGAGGTTGACCAATGTGTTAAAATGGCGGAATTGATAGAATATAATTTAGAAGATGTGGATGCTGCTATATTAGCTGTTCGTGTAGCTCTTGCAAAGGGCATGAGTTGGGAGGATCTTGCTCGTATGGTAAAGGAAGAGAAGAAATCTGGAAATCCTATTGCCGGACTCATTGACAAGCTTTATCTTGAAAGGAATTGCATGACATTGCTTTTGAGCAACAATCTTGATGAAATGGATGATGATGAGAAGACTCTCCCTGCAGATAAGGTGGAAGTTGATTTAGCGCTTTCTGCACATGCCAATGCTCGGCGGTGGTATGAACTAAAGAAAAGCAAGGAGAGCAAACAGGAGAAGACTGTAACAGCACATGAAAAAGCATTTAAAGCTGCCGAAAGAAAGACTCGTCTGCAGCTATCGCAGGAAAAAGCTGTTGCTACCATTTCACATATGCGCAAGGTTCACTGGTTTGAGAAATTTAACTGGTTCATCAGCAGTGAAAACTATTTGGTTATCAGTGGACGTGATGCTCAACAAAATGAGATGATAGTCAAGCGCTACATGTCAAAAGGAGATCTGTATGTTCATGCAGATTTACATGGCGCTTCTAGTACTGTAGTAAAGAACCATAGGCCTGAACAACCAGTGCCTCCACTTACTTTAAATCAAGCTGGATGCTACACAGTTTGCCAAAGTGCGGCATGGGATTCAAAGATGGTCACTAGTGCTTGGTGGGTTTATCCTCACCAAGTCAGTAAAACTGCTCCTACAGGGGAGTATCTTACAGTTGGAAGTTTCATGATTCGTGGGAAGAAGAACTTCCTTCCTCCACACCCTCTGATTATGGGCTTTGGGCTGTTATTTCGGTTGGATGAGAGCTCCTTGGGTTCACATCTGAACGAGAGGAGGGTAAGAGGTGAGGAGGAAGGGACAAATGATGCTGATGAAAGTGGGCCTCTAAGTGAGGTTTCTGATTCTGAATCAGAGAAGGATTTGAGACAGGAAAAAATTCTAGGGGAATCACAAAGTGTACCAGATTCATCTAAACATGTACATAAACCAGAAGATATATCCTCTCAGAATAGCTTACCTACAACCCCTACAACCGTTGCTAAACAAGTGGACTCAAATTCAACCAGGAACATCTTGAATGATGTTGATCAAGACAACGCAGTTGATGTTGCTGTGAATGGTGTTGCACCTGTCACCCCACAACTTGAGGACCTCATTGATAGAGCTCTTGGGCTTGGATCTGCATCTATGTCTGTTAAAAATTATAAAGTTGAAACCTCTCCAGTTGATTCGGTAGCAGAACAAAATGTTGAAGAGAATAAGGCTACAGTAAAAGAGAAAGCTTATATCTCGAAAGCTGAAAGAAGAAAGCTCAAGAAAGGCCAGAGTGTTCCTGAAGATGTTAAACTGAAAGTAGATAAAGTGAAAGAAAATGTTTCTGTCCGTCAGCCTGAAAATGAAGTAAATGATAAGAAGCCAGGTGGTGGAAAAACCAGCCGTGGACAGAGGGGTAAACTCAAGAAGATAAAAGAGAAATATGCCGATCAAGATGAGGAAGAAAGAAGGATTCGTATGGCTTTACTAGCCTCTGCTGGAAATGTACAGAAGAAAGGAGAGTCGCAAAATGGAGAGATAGCTCAAGTGGAGGACAAGAAACCTGGTCCTGAAGAGGGTGCAAAAATATGTTATAAATGTAAGAAGGTAGGTCATCTGTCCCGAGATTGCCAAGAACATCAAGTTGATACATCAGATAGTCATGCAAATGGTGGAGTTGATCACCCTAATGCCTTGGATAAAACTACTTCTGAACTAGACAAGGTGACAATTGAGGAGGATGATATTCATGAGATAGGTGAAGAGGAGAAAGAAAAATTAAATGATGTGGATTACTTGACTGGCAATCCACTGCCCAGTGATATTCTCTTGTATGCAGTGCCTGTATGTGGTCCTTATAATGCAGTCCAATCTTACAAATATCGAGTGAAGATAATTCCTGGCTCTGTGAAGAGAGGAAAAGGTGCAAAAACAGCCATGAACTTGTTTAGCCACATGCCGGACGCAACAGCTAGAGAGAAAGAGTTGATGAAAGCGTGTACTGATCCTGAGCTGGTTGCCGCAATTATTGGAAATGTGAAGATTACAGCTGCAGGCCTCTCTCAATTGAAGCAGAAGCAAAAGAAAGTCAAGAAGAACGCAGCGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006913 GO:0008150 GO:0046907 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3441 DUF814 FbpA zf-CCHC

Protein Analysis

1133

Amino Acids

126.45

Weight (kDa)

7.34

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NFACT_N PF05833 19 - 149 5.4e-13 NFACT N-terminal and middle domains
NFACT_N PF05833 231 - 518 2.6e-08 NFACT N-terminal and middle domains
NFACT-R_1 PF05670 554 - 665 7.2e-41 NFACT protein RNA binding domain
NFACT-C PF11923 1020 - 1113 9.3e-27 NFACT protein C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49930
fragaria_vesca FvH4_4g20770 FvH4_4g20770 FvH4_4g20770
malus_domestica MD13G1148000.v1.1 MD16G1147800.v1.1
prunus_persica Prupe.1G111500_v2.0.a1
pyrus_communis pycom13g12740 pycom16g12630
rosa_chinensis RchiOBHm_Chr4g0426211
rosa_laevigata RLG00000007310
rosa_roxburghii Rroxscaffold_5G00368230
rosa_rugosa Rorug04G0209600
rosa_samantha Rh4AG266500 Rh4BG272500 Rh4CG285700 Rh4DG268800
rosa_wichuraiana Rw4G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 2463, 2886, 3150
Acc16I TGCGCA 2 cut(s) 378, 1640
Acc36I ACCTGC 1 cut(s) 748
AccB7I CCANNNNNTGG 1 cut(s) 2681
AccI GTMKAC 1 cut(s) 87
AccII CGCG 1 cut(s) 1152
AclWI GGATC 4 cut(s) 1164, 1308, 2443, 3290
AcoI YGGCCR 3 cut(s) 24, 33, 970
AcsI RAATTY 6 cut(s) 854, 928, 986, 1661, 2193, 2314
AcuI CTGAAG 4 cut(s) 609, 921, 2613, 2883
AcyI GRCGYC 2 cut(s) 138, 189
AdeI CACNNNGTG 1 cut(s) 2213
AfaI GTAC 5 cut(s) 1798, 2217, 2238, 2799, 3292
AfeI AGCGCT 2 cut(s) 1473, 1742
AfiI CCNNNNNNNGG 9 cut(s) 216, 1134, 1349, 1494, 1882, 2681, 2867, 3140, 3250
AflIII ACRYGT 2 cut(s) 1746, 2233
AhlI ACTAGT 1 cut(s) 1907
AjiI CACGTC 2 cut(s) 31, 1709
AjnI CCWGG 6 cut(s) 673, 958, 2321, 2674, 2854, 3190
Alw21I GWGCWC 3 cut(s) 1124, 2066, 2425
Alw26I GTCTC 1 cut(s) 2176
AlwI GGATC 4 cut(s) 1164, 1308, 2443, 3290
AlwNI CAGNNNCTG 1 cut(s) 3134
Ama87I CYCGRG 2 cut(s) 284, 2913
Aor51HI AGCGCT 2 cut(s) 1473, 1742
AoxI GGCC 7 cut(s) 24, 33, 970, 1817, 2138, 2578, 3346
ApoI RAATTY 6 cut(s) 854, 928, 986, 1661, 2193, 2314
ArsI GACNNNNNNTTYG 6 cut(s) 174, 206, 399, 431, 1381, 1413
Asp700I GAANNNNTTC 5 cut(s) 167, 894, 1010, 2003, 2193
AspLEI GCGC 8 cut(s) 75, 80, 379, 616, 1474, 1641, 1743, 1790
AspS9I GGNCC 6 cut(s) 737, 944, 2138, 2407, 2858, 3143
AvaI CYCGRG 2 cut(s) 284, 2913
AvaII GGWCC 5 cut(s) 737, 944, 2407, 2858, 3143
BalI TGGCCA 1 cut(s) 972
BanII GRGCYC 3 cut(s) 1124, 2066, 2425
BbsI GAAGAC 3 cut(s) 160, 1442, 1547
Bbv12I GWGCWC 3 cut(s) 1124, 2066, 2425
BccI CCATC 3 cut(s) 483, 958, 1894
BceAI ACGGC 2 cut(s) 39, 2679
BciT130I CCWGG 6 cut(s) 675, 960, 2323, 2676, 2856, 3192
BciVI GTATCC 1 cut(s) 899
BclI TGATCA 2 cut(s) 2344, 2971
BcoDI GTCTC 1 cut(s) 2176
BcuI ACTAGT 1 cut(s) 1907
BfaI CTAG 8 cut(s) 716, 812, 1794, 1908, 2198, 2780, 3008, 3264
BfmI CTRYAG 7 cut(s) 1069, 1446, 1595, 1800, 1953, 2523, 3342
BfoI RGCGCY 3 cut(s) 1475, 1744, 1791
BfuAI ACCTGC 1 cut(s) 748
BfuI GTATCC 1 cut(s) 899
BglI GCCNNNNNGGC 1 cut(s) 32
BglII AGATCT 1 cut(s) 1759
BmcAI AGTACT 1 cut(s) 1798
Bme1390I CCNGG 6 cut(s) 675, 960, 2323, 2676, 2856, 3192
Bme18I GGWCC 5 cut(s) 737, 944, 2407, 2858, 3143
BmeT110I CYCGRG 2 cut(s) 284, 2913
BmgBI CACGTC 2 cut(s) 31, 1709
BmgT120I GGNCC 6 cut(s) 737, 944, 2138, 2407, 2858, 3143
BmiI GGNNCC 2 cut(s) 558, 946
BmrFI CCNGG 6 cut(s) 675, 960, 2323, 2676, 2856, 3192
BmrI ACTGGG 2 cut(s) 737, 3102
BmuI ACTGGG 2 cut(s) 737, 3102
BpiI GAAGAC 3 cut(s) 160, 1442, 1547
BplI GAGNNNNNCTC 2 cut(s) 217, 249
BpmI CTGGAG 1 cut(s) 2463
Bpu10I CCTNAGC 1 cut(s) 3300
BpuEI CTTGAG 4 cut(s) 2423, 2555, 2699, 2820
BsaBI GATNNNNATC 2 cut(s) 2343, 2440
BsaHI GRCGYC 2 cut(s) 138, 189
BsaJI CCNNGG 6 cut(s) 39, 552, 1056, 2067, 2695, 2985
BsaWI WCCGGW 1 cut(s) 884
Bsc4I CCNNNNNNNGG 9 cut(s) 216, 1134, 1349, 1494, 1882, 2681, 2867, 3140, 3250
Bse1I ACTGG 9 cut(s) 663, 732, 869, 1655, 1673, 1829, 2480, 3097, 3108
Bse3DI GCAATG 1 cut(s) 1391
Bse8I GATNNNNATC 2 cut(s) 2343, 2440
BseBI CCWGG 6 cut(s) 675, 960, 2323, 2676, 2856, 3192
BseDI CCNNGG 6 cut(s) 39, 552, 1056, 2067, 2695, 2985
BseJI GATNNNNATC 2 cut(s) 2343, 2440
BseLI CCNNNNNNNGG 9 cut(s) 216, 1134, 1349, 1494, 1882, 2681, 2867, 3140, 3250
BseMI GCAATG 1 cut(s) 1391
BseMII CTCAG 3 cut(s) 741, 2276, 3291
BseNI ACTGG 9 cut(s) 663, 732, 869, 1655, 1673, 1829, 2480, 3097, 3108
BseRI GAGGAG 4 cut(s) 2104, 2120, 3041, 3071
BseX3I CGGCCG 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 301
BsgI GTGCAG 2 cut(s) 1052, 1464
Bsh1236I CGCG 1 cut(s) 1152
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 7 cut(s) 26, 35, 972, 1819, 2140, 2580, 3348
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 3 cut(s) 1124, 2066, 2425
BsiHKCI CYCGRG 2 cut(s) 284, 2913
BsiSI CCGG 4 cut(s) 150, 885, 1350, 3251
BslFI GGGAC 5 cut(s) 233, 734, 930, 2128, 2896
BslI CCNNNNNNNGG 9 cut(s) 216, 1134, 1349, 1494, 1882, 2681, 2867, 3140, 3250
BsmAI GTCTC 1 cut(s) 2176
BsmFI GGGAC 5 cut(s) 233, 734, 930, 2128, 2896
BsnI GGCC 7 cut(s) 26, 35, 972, 1819, 2140, 2580, 3348
BsoBI CYCGRG 2 cut(s) 284, 2913
Bsp1286I GDGCHC 3 cut(s) 1124, 2066, 2425
Bsp1407I TGTACA 2 cut(s) 2236, 2797
BspANI GGCC 7 cut(s) 26, 35, 972, 1819, 2140, 2580, 3348
BspCNI CTCAG 3 cut(s) 742, 2275, 3292
BspFNI CGCG 1 cut(s) 1152
BspHI TCATGA 3 cut(s) 417, 1983, 3040
BspLI GGNNCC 2 cut(s) 558, 946
BspMAI CTGCAG 3 cut(s) 1450, 1599, 3346
BspMI ACCTGC 1 cut(s) 748
BspPI GGATC 4 cut(s) 1164, 1308, 2443, 3290
BsrDI GCAATG 1 cut(s) 1391
BsrGI TGTACA 2 cut(s) 2236, 2797
BsrI ACTGG 9 cut(s) 663, 732, 869, 1655, 1673, 1829, 2480, 3097, 3108
BssECI CCNNGG 6 cut(s) 39, 552, 1056, 2067, 2695, 2985
BssNI GRCGYC 2 cut(s) 138, 189
BssT1I CCWWGG 4 cut(s) 552, 1056, 2067, 2985
Bst2UI CCWGG 6 cut(s) 675, 960, 2323, 2676, 2856, 3192
Bst4CI ACNGT 7 cut(s) 131, 1546, 1801, 1870, 1972, 2293, 2527
Bst6I CTCTTC 6 cut(s) 429, 1317, 2505, 2859, 3048, 3197
BstACI GRCGYC 2 cut(s) 138, 189
BstAPI GCANNNNNTGC 2 cut(s) 75, 611
BstAUI TGTACA 2 cut(s) 2236, 2797
BstC8I GCNNGC 4 cut(s) 53, 71, 434, 3346
BstDEI CTNAG 4 cut(s) 750, 2144, 2262, 3300
BstDSI CCRYGG 1 cut(s) 2695
BstFNI CGCG 1 cut(s) 1152
BstH2I RGCGCY 3 cut(s) 1475, 1744, 1791
BstHHI GCGC 8 cut(s) 75, 80, 379, 616, 1474, 1641, 1743, 1790
BstMAI GTCTC 1 cut(s) 2176
BstMCI CGRYCG 1 cut(s) 27
BstNI CCWGG 6 cut(s) 675, 960, 2323, 2676, 2856, 3192
BstNSI RCATGY 5 cut(s) 73, 1487, 1750, 2237, 3250
BstSCI CCNGG 6 cut(s) 673, 958, 2321, 2674, 2854, 3190
BstSFI CTRYAG 7 cut(s) 1069, 1446, 1595, 1800, 1953, 2523, 3342
BstUI CGCG 1 cut(s) 1152
BstV2I GAAGAC 3 cut(s) 160, 1442, 1547
BstX2I RGATCY 3 cut(s) 1300, 1759, 2435
BstYI RGATCY 3 cut(s) 1300, 1759, 2435
BstZI CGGCCG 1 cut(s) 24
BsuI GTATCC 1 cut(s) 899
BsuRI GGCC 7 cut(s) 26, 35, 972, 1819, 2140, 2580, 3348
BtgI CCRYGG 1 cut(s) 2695
BtrI CACGTC 2 cut(s) 31, 1709
BtsI GCAGTG 3 cut(s) 1687, 3101, 3135
BtsIMutI CAGTG 7 cut(s) 1648, 1687, 1708, 1836, 3101, 3115, 3135
BveI ACCTGC 1 cut(s) 748
Cac8I GCNNGC 4 cut(s) 53, 71, 434, 3346
CaiI CAGNNNCTG 1 cut(s) 3134
CciI TCATGA 3 cut(s) 417, 1983, 3040
CfoI GCGC 8 cut(s) 75, 80, 379, 616, 1474, 1641, 1743, 1790
Cfr13I GGNCC 6 cut(s) 737, 944, 2138, 2407, 2858, 3143
CseI GACGC 3 cut(s) 127, 178, 3263
CsiI ACCWGGT 1 cut(s) 2854
Csp6I GTAC 5 cut(s) 1797, 2216, 2237, 2798, 3291
CviQI GTAC 5 cut(s) 1797, 2216, 2237, 2798, 3291
DdeI CTNAG 4 cut(s) 750, 2144, 2262, 3300
DraI TTTAAA 2 cut(s) 1570, 1848
DraIII CACNNNGTG 1 cut(s) 2213
EaeI YGGCCR 3 cut(s) 24, 33, 970
EagI CGGCCG 1 cut(s) 24
Eam1104I CTCTTC 6 cut(s) 429, 1317, 2505, 2859, 3048, 3197
EarI CTCTTC 6 cut(s) 429, 1317, 2505, 2859, 3048, 3197
EciI GGCGGA 1 cut(s) 1229
Ecl136II GAGCTC 3 cut(s) 1122, 2064, 2423
EclXI CGGCCG 1 cut(s) 24
Eco130I CCWWGG 4 cut(s) 552, 1056, 2067, 2985
Eco147I AGGCCT 2 cut(s) 1819, 3348
Eco24I GRGCYC 3 cut(s) 1124, 2066, 2425
Eco47I GGWCC 5 cut(s) 737, 944, 2407, 2858, 3143
Eco47III AGCGCT 2 cut(s) 1473, 1742
Eco52I CGGCCG 1 cut(s) 24
Eco53kI GAGCTC 3 cut(s) 1122, 2064, 2423
Eco57I CTGAAG 4 cut(s) 609, 921, 2613, 2883
Eco88I CYCGRG 2 cut(s) 284, 2913
EcoICRI GAGCTC 3 cut(s) 1122, 2064, 2423
EcoO109I RGGNCCY 1 cut(s) 2407
EcoRI GAATTC 1 cut(s) 986
EcoRII CCWGG 6 cut(s) 673, 958, 2321, 2674, 2854, 3190
EcoT14I CCWWGG 4 cut(s) 552, 1056, 2067, 2985
EcoT22I ATGCAT 2 cut(s) 607, 1054
EcoT38I GRGCYC 3 cut(s) 1124, 2066, 2425
ErhI CCWWGG 4 cut(s) 552, 1056, 2067, 2985
FalI AAGNNNNNCTT 4 cut(s) 155, 187, 1988, 2020
FaqI GGGAC 5 cut(s) 233, 734, 930, 2128, 2896
FauNDI CATATG 2 cut(s) 1176, 1635
FbaI TGATCA 2 cut(s) 2344, 2971
FblI GTMKAC 1 cut(s) 87
FriOI GRGCYC 3 cut(s) 1124, 2066, 2425
FspBI CTAG 8 cut(s) 716, 812, 1794, 1908, 2198, 2780, 3008, 3264
FspI TGCGCA 2 cut(s) 378, 1640
GlaI GCGC 8 cut(s) 74, 79, 378, 615, 1473, 1640, 1742, 1789
GsaI CCCAGC 1 cut(s) 305
GsuI CTGGAG 1 cut(s) 2463
HaeII RGCGCY 3 cut(s) 1475, 1744, 1791
HaeIII GGCC 7 cut(s) 26, 35, 972, 1819, 2140, 2580, 3348
HapII CCGG 4 cut(s) 150, 885, 1350, 3251
HgaI GACGC 3 cut(s) 127, 178, 3263
HhaI GCGC 8 cut(s) 75, 80, 379, 616, 1474, 1641, 1743, 1790
Hin1I GRCGYC 2 cut(s) 138, 189
Hin6I GCGC 8 cut(s) 73, 78, 377, 614, 1472, 1639, 1741, 1788
HinP1I GCGC 8 cut(s) 73, 78, 377, 614, 1472, 1639, 1741, 1788
HincII GTYRAC 1 cut(s) 1195
HindII GTYRAC 1 cut(s) 1195
HindIII AAGCTT 4 cut(s) 119, 830, 1364, 2538
HpaII CCGG 4 cut(s) 150, 885, 1350, 3251
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 9 cut(s) 157, 273, 584, 896, 2018, 2105, 2167, 2754, 2890
HpyCH4III ACNGT 7 cut(s) 131, 1546, 1801, 1870, 1972, 2293, 2527
HpyCH4IV ACGT 2 cut(s) 30, 1708
HpyF3I CTNAG 4 cut(s) 750, 2144, 2262, 3300
HpySE526I ACGT 2 cut(s) 30, 1708
Hsp92I GRCGYC 2 cut(s) 138, 189
HspAI GCGC 8 cut(s) 73, 78, 377, 614, 1472, 1639, 1741, 1788
Ksp22I TGATCA 2 cut(s) 2344, 2971
LmnI GCTCC 3 cut(s) 367, 1954, 2069
MabI ACCWGGT 1 cut(s) 2854
MaeI CTAG 8 cut(s) 716, 812, 1794, 1908, 2198, 2780, 3008, 3264
MaeII ACGT 2 cut(s) 30, 1708
MaeIII GTNAC 7 cut(s) 139, 468, 847, 1546, 1903, 2389, 3016
MfeI CAATTG 2 cut(s) 3021, 3356
MflI RGATCY 3 cut(s) 1300, 1759, 2435
MhlI GDGCHC 3 cut(s) 1124, 2066, 2425
MlsI TGGCCA 1 cut(s) 972
MluNI TGGCCA 1 cut(s) 972
MlyI GAGTC 9 cut(s) 155, 415, 668, 1093, 1347, 1432, 1582, 2303, 2822
MmeI TCCRAC 2 cut(s) 1954, 2034
Mox20I TGGCCA 1 cut(s) 972
Mph1103I ATGCAT 2 cut(s) 607, 1054
MroXI GAANNNNTTC 5 cut(s) 167, 894, 1010, 2003, 2193
MscI TGGCCA 1 cut(s) 972
MseI TTAA 9 cut(s) 1140, 1181, 1206, 1569, 1665, 1847, 2454, 2601, 3071
MslI CAYNNNNRTG 5 cut(s) 441, 914, 1488, 2958, 2979
Msp20I TGGCCA 1 cut(s) 972
MspA1I CMGCKG 3 cut(s) 301, 521, 3341
MspI CCGG 4 cut(s) 150, 885, 1350, 3251
MspR9I CCNGG 6 cut(s) 675, 960, 2323, 2676, 2856, 3192
MteI GCGCNGCGC 1 cut(s) 76
MunI CAATTG 2 cut(s) 3021, 3356
MvaI CCWGG 6 cut(s) 675, 960, 2323, 2676, 2856, 3192
MvnI CGCG 1 cut(s) 1152
NdeI CATATG 2 cut(s) 1176, 1635
NlaIV GGNNCC 2 cut(s) 558, 946
NmeAIII GCCGAG 2 cut(s) 64, 1474
NmuCI GTSAC 5 cut(s) 139, 468, 1903, 2389, 3016
NsbI TGCGCA 2 cut(s) 378, 1640
NsiI ATGCAT 2 cut(s) 607, 1054
NspI RCATGY 5 cut(s) 73, 1487, 1750, 2237, 3250
PaeI GCATGC 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 284
PagI TCATGA 3 cut(s) 417, 1983, 3040
PceI AGGCCT 2 cut(s) 1819, 3348
PciI ACATGT 2 cut(s) 1746, 2233
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 186
PdmI GAANNNNTTC 5 cut(s) 167, 894, 1010, 2003, 2193
PflMI CCANNNNNTGG 1 cut(s) 2681
PleI GAGTC 9 cut(s) 154, 415, 667, 1092, 1347, 1432, 1582, 2303, 2821
PpsI GAGTC 9 cut(s) 154, 415, 667, 1092, 1347, 1432, 1582, 2303, 2821
PpuMI RGGWCCY 1 cut(s) 2407
PscI ACATGT 2 cut(s) 1746, 2233
PsiI TTATAA 3 cut(s) 2463, 2886, 3150
Psp124BI GAGCTC 3 cut(s) 1124, 2066, 2425
Psp5II RGGWCCY 1 cut(s) 2407
Psp6I CCWGG 6 cut(s) 673, 958, 2321, 2674, 2854, 3190
PspFI CCCAGC 1 cut(s) 301
PspGI CCWGG 6 cut(s) 673, 958, 2321, 2674, 2854, 3190
PspN4I GGNNCC 2 cut(s) 558, 946
PspPI GGNCC 6 cut(s) 737, 944, 2138, 2407, 2858, 3143
PspPPI RGGWCCY 1 cut(s) 2407
PspXI VCTCGAGB 1 cut(s) 284
PstI CTGCAG 3 cut(s) 1450, 1599, 3346
PstNI CAGNNNCTG 1 cut(s) 3134
PsuI RGATCY 3 cut(s) 1300, 1759, 2435
PvuII CAGCTG 2 cut(s) 301, 3341
RsaI GTAC 5 cut(s) 1798, 2217, 2238, 2799, 3292
RsaNI GTAC 5 cut(s) 1797, 2216, 2237, 2798, 3291
RseI CAYNNNNRTG 5 cut(s) 441, 914, 1488, 2958, 2979
SacI GAGCTC 3 cut(s) 1124, 2066, 2425
SaqAI TTAA 9 cut(s) 1140, 1181, 1206, 1569, 1665, 1847, 2454, 2601, 3071
Sau96I GGNCC 6 cut(s) 737, 944, 2138, 2407, 2858, 3143
ScaI AGTACT 1 cut(s) 1798
SchI GAGTC 9 cut(s) 155, 415, 668, 1093, 1347, 1432, 1582, 2303, 2822
ScrFI CCNGG 6 cut(s) 675, 960, 2323, 2676, 2856, 3192
SduI GDGCHC 3 cut(s) 1124, 2066, 2425
SexAI ACCWGGT 1 cut(s) 2854
SfcI CTRYAG 7 cut(s) 1069, 1446, 1595, 1800, 1953, 2523, 3342
SfiI GGCCNNNNNGGCC 1 cut(s) 32
Sfr274I CTCGAG 1 cut(s) 284
SinI GGWCC 5 cut(s) 737, 944, 2407, 2858, 3143
SlaI CTCGAG 1 cut(s) 284
SmiMI CAYNNNNRTG 5 cut(s) 441, 914, 1488, 2958, 2979
SmlI CTYRAG 5 cut(s) 284, 2402, 2570, 2714, 2835
SmoI CTYRAG 5 cut(s) 284, 2402, 2570, 2714, 2835
SpeI ACTAGT 1 cut(s) 1907
SphI GCATGC 1 cut(s) 73
SseBI AGGCCT 2 cut(s) 1819, 3348
SspI AATATT 1 cut(s) 388
SspMI CTAG 8 cut(s) 716, 812, 1794, 1908, 2198, 2780, 3008, 3264
SstI GAGCTC 3 cut(s) 1124, 2066, 2425
StuI AGGCCT 2 cut(s) 1819, 3348
StyD4I CCNGG 6 cut(s) 673, 958, 2321, 2674, 2854, 3190
StyI CCWWGG 4 cut(s) 552, 1056, 2067, 2985
TaaI ACNGT 7 cut(s) 131, 1546, 1801, 1870, 1972, 2293, 2527
TaiI ACGT 2 cut(s) 33, 1711
TaqI TCGA 7 cut(s) 180, 285, 499, 595, 1019, 2549, 3175
TatI WGTACW 4 cut(s) 1796, 2236, 2797, 3290
TauI GCSGC 7 cut(s) 38, 58, 61, 138, 189, 1886, 3314
Tru1I TTAA 9 cut(s) 1140, 1181, 1206, 1569, 1665, 1847, 2454, 2601, 3071
Tru9I TTAA 9 cut(s) 1140, 1181, 1206, 1569, 1665, 1847, 2454, 2601, 3071
TscAI CASTG 7 cut(s) 1655, 1687, 1708, 1836, 3108, 3115, 3135
TseFI GTSAC 5 cut(s) 139, 468, 1903, 2389, 3016
Tsp45I GTSAC 5 cut(s) 139, 468, 1903, 2389, 3016
TspGWI ACGGA 3 cut(s) 225, 738, 2630
TspRI CASTG 7 cut(s) 1655, 1687, 1708, 1836, 3108, 3115, 3135
Van91I CCANNNNNTGG 1 cut(s) 2681
VpaK11BI GGWCC 5 cut(s) 737, 944, 2407, 2858, 3143
XapI RAATTY 6 cut(s) 854, 928, 986, 1661, 2193, 2314
XceI RCATGY 5 cut(s) 73, 1487, 1750, 2237, 3250
XhoI CTCGAG 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 87
XmnI GAANNNNTTC 5 cut(s) 167, 894, 1010, 2003, 2193
XspI CTAG 8 cut(s) 716, 812, 1794, 1908, 2198, 2780, 3008, 3264
ZrmI AGTACT 1 cut(s) 1798
Zsp2I ATGCAT 2 cut(s) 607, 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.