Rorug04G0209600

Nuclear export mediator factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013357
Physical Location & Seq
Forward (+)
36522563 .. 36522886
324 bp
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UTR
Exon/CDS
Intron
Rorug04G0209600.1

Sequence Viewer

Length: 324 bp
ATGGCAATAAATCATGGCATGCAGTTCTTGCAGTCCTTTCCAAACCAAGGCATTGTGATAGAAACTGACTGTCTTCAGGCCACCATGGACATTGCTAATTCAAGGTATGATTTACTTGATTGTGCTGCTATTATAGATGACATACAGATGGCTTCAAGGGCTCGACCATATGTGCAAATCATATTTGCACCACGAACATGCAATGCAGTGGCTCACAGGCTAGCCAGTTTAGCTTTTGATGACAATTGTAGTGCTATTTGGTCTAATGTACCTCCAGATTGCATTCTGGACACCTTAAGCTTTGATTGTAATCAACAATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006913 GO:0008150 GO:0046907 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3441 DUF814 FbpA zf-CCHC

Protein Analysis

107

Amino Acids

11.87

Weight (kDa)

4.25

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 77 4.7e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49930
fragaria_vesca FvH4_4g20770 FvH4_4g20770 FvH4_4g20770
malus_domestica MD13G1148000.v1.1 MD16G1147800.v1.1
prunus_persica Prupe.1G111500_v2.0.a1
pyrus_communis pycom13g12740 pycom16g12630
rosa_chinensis RchiOBHm_Chr4g0426211
rosa_laevigata RLG00000007310
rosa_roxburghii Rroxscaffold_5G00368230
rosa_rugosa Rorug04G0209600
rosa_samantha Rh4AG266500 Rh4BG272500 Rh4CG285700 Rh4DG268800
rosa_wichuraiana Rw4G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 47
AflII CTTAAG 1 cut(s) 295
AgsI TTSAA 2 cut(s) 102, 156
AluBI AGCT 2 cut(s) 233, 300
AluI AGCT 2 cut(s) 233, 300
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 125
AsuNHI GCTAGC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 142
BfaI CTAG 1 cut(s) 221
BfrI CTTAAG 1 cut(s) 295
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmtI GCTAGC 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 46, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 225
Bse3DI GCAATG 2 cut(s) 90, 208
Bse8I GATNNNNATC 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 46, 84
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 2 cut(s) 90, 208
BseNI ACTGG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 112
BshFI GGCC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 47
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 163
Bsp19I CCATGG 1 cut(s) 84
BspANI GGCC 1 cut(s) 80
BspOI GCTAGC 1 cut(s) 224
BspTI CTTAAG 1 cut(s) 295
BsrDI GCAATG 2 cut(s) 90, 208
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 2 cut(s) 46, 84
BssT1I CCWWGG 2 cut(s) 46, 84
Bst4CI ACNGT 1 cut(s) 71
BstAFI CTTAAG 1 cut(s) 295
BstAPI GCANNNNNTGC 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 20, 222
BstDSI CCRYGG 1 cut(s) 84
BstMWI GCNNNNNNNGC 3 cut(s) 28, 158, 230
BstNSI RCATGY 2 cut(s) 22, 201
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 65
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 84
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 2 cut(s) 20, 222
Csp6I GTAC 1 cut(s) 269
CviAII CATG 4 cut(s) 14, 19, 85, 198
CviJI RGCY 8 cut(s) 80, 152, 161, 212, 220, 224, 233, 300
CviKI_1 RGCY 8 cut(s) 80, 152, 161, 212, 220, 224, 233, 300
CviQI GTAC 1 cut(s) 269
Eco130I CCWWGG 2 cut(s) 46, 84
Eco24I GRGCYC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 59
EcoT14I CCWWGG 2 cut(s) 46, 84
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 2 cut(s) 46, 84
FaeI CATG 4 cut(s) 17, 22, 88, 201
FatI CATG 4 cut(s) 13, 18, 84, 197
FauNDI CATATG 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 126
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 221
GluI GCNGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 1 cut(s) 80
Hin1II CATG 4 cut(s) 17, 22, 88, 201
HindIII AAGCTT 1 cut(s) 298
Hpy188III TCNNGA 2 cut(s) 275, 287
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 7 cut(s) 22, 31, 175, 188, 201, 206, 282
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 158, 230
Hsp92II CATG 4 cut(s) 17, 22, 88, 201
LpnPI CCDG 5 cut(s) 62, 202, 238, 272, 288
Lsp1109I GCAGC 1 cut(s) 112
MaeI CTAG 1 cut(s) 221
MboII GAAGA 1 cut(s) 65
MfeI CAATTG 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 2 cut(s) 97, 244
MnlI CCTC 1 cut(s) 282
MseI TTAA 1 cut(s) 296
MslI CAYNNNNRTG 2 cut(s) 146, 196
MspCI CTTAAG 1 cut(s) 295
MunI CAATTG 1 cut(s) 244
Mva1269I GAATGC 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 28, 158, 230
NcoI CCATGG 1 cut(s) 84
NdeI CATATG 1 cut(s) 169
NheI GCTAGC 1 cut(s) 220
NlaIII CATG 4 cut(s) 17, 22, 88, 201
NspI RCATGY 2 cut(s) 22, 201
PaeI GCATGC 1 cut(s) 22
PctI GAATGC 1 cut(s) 282
PkrI GCNGC 1 cut(s) 127
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 2 cut(s) 146, 196
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 1 cut(s) 126
SduI GDGCHC 1 cut(s) 163
SetI ASST 5 cut(s) 107, 235, 274, 296, 302
SmiMI CAYNNNNRTG 2 cut(s) 146, 196
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
SphI GCATGC 1 cut(s) 22
Sse9I AATT 2 cut(s) 97, 244
SspMI CTAG 1 cut(s) 221
StyI CCWWGG 2 cut(s) 46, 84
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 163
TasI AATT 2 cut(s) 97, 244
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TscAI CASTG 1 cut(s) 213
TseI GCWGC 1 cut(s) 125
TspRI CASTG 1 cut(s) 213
Vha464I CTTAAG 1 cut(s) 295
XceI RCATGY 2 cut(s) 22, 201
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.