pycom16g12720

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012734
Physical Location & Seq
Forward (+)
8991837 .. 8992376
540 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 540 bp
ATGATATTTGATTCTGAGTCGGGCAAATGGAGGAAGTTTGTTTCGTTTCAGGATGATCAGTTCACCCATATGAATAAGAGCCAAGTCGTGTTTGTTAATGGTGCACTTCATTGGTTGACTGGTAGTTCCTGTATTCTCGCGCTTGATTTGGAGTTTGATGTTTGGAGGAAGATGTCATTGCCGGAACAAGTGACTTGTGTGTCCGGAAATAGGTTTTACTTGTTGGAGTCAGATGGTTGCCTGTCGGTGATCCAGATTTCAGATGCTTGGATGAAAATTTGGGTGTTGAAAGGTTACGGGAGAGAGGAGTGGCATTTGGTGGATACGGTGAGTCTTCGATGTATCAAAGGACTTGTGCCGGGCATCTTCCCCATATGTCAGACTGGTGAATGCGTTTTCTTGGCAACCCACAAGCAGATACTGGTATTTTATCGCAAGACTCGTGTGTGGAAAGAGATGTACTCTGTGAAGAACAGCTCTACACTCCCGTTGTGGTACTCGGCACATGCATTTCGGAGCACGATTTTGTCTTGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

180

Amino Acids

20.72

Weight (kDa)

8.47

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 157 5.1e-08 F-box associated beta propeller domain
Beta-prop_AT5G49610-like PF23635 7 - 114 1.1e-07 F-box protein AT5G49610-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012734)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49610
fragaria_vesca FvH4_4g20690
malus_domestica MD13G1148700.v1.1 MD16G1149000.v1.1
prunus_persica Prupe.1G112700_v2.0.a1
pyrus_communis pycom13g12800 pycom16g12720
rosa_chinensis RchiOBHm_Chr4g0426111
rosa_laevigata RLG00000007318
rosa_multiflora Rmu_co8375493.1_g000001 Rmu_ssc0000281.1_g000004
rosa_roxburghii Rroxscaffold_5G00368100
rosa_rugosa Rorug04G0209100
rosa_samantha Rh4AG265600 Rh4BG271700 Rh4CG284600 Rh4DG267800
rosa_wichuraiana Rw4G022950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 199
AccII CGCG 1 cut(s) 140
AccIII TCCGGA 1 cut(s) 203
AclWI GGATC 1 cut(s) 244
AcsI RAATTY 1 cut(s) 276
AfaI GTAC 2 cut(s) 461, 497
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 1 cut(s) 289
AloI GAACNNNNNNTCC 2 cut(s) 44, 76
AluBI AGCT 1 cut(s) 477
AluI AGCT 1 cut(s) 477
Alw21I GWGCWC 2 cut(s) 106, 521
Alw44I GTGCAC 1 cut(s) 102
AlwI GGATC 1 cut(s) 244
AlwNI CAGNNNCTG 1 cut(s) 421
Aor13HI TCCGGA 1 cut(s) 203
ApaLI GTGCAC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 276
AspLEI GCGC 1 cut(s) 142
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 4 cut(s) 55, 259, 340, 398
BaeGI GKGCMC 1 cut(s) 106
BauI CACGAG 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 326
Bbv12I GWGCWC 2 cut(s) 106, 521
BccI CCATC 1 cut(s) 227
BciVI GTATCC 1 cut(s) 316
BclI TGATCA 1 cut(s) 55
BcnI CCSGG 1 cut(s) 360
BfuI GTATCC 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 2 cut(s) 253, 372
BpiI GAAGAC 1 cut(s) 326
BplI GAGNNNNNCTC 2 cut(s) 446, 478
BpuMI CCSGG 1 cut(s) 360
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 3 cut(s) 124, 388, 426
Bse3DI GCAATG 1 cut(s) 176
BseAI TCCGGA 1 cut(s) 203
BseGI GGATG 2 cut(s) 58, 276
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 3 cut(s) 124, 388, 426
BseRI GAGGAG 1 cut(s) 320
BseSI GKGCMC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 140
BsiHKAI GWGCWC 2 cut(s) 106, 521
BsiSI CCGG 3 cut(s) 182, 204, 359
BslI CCNNNNNNNGG 1 cut(s) 210
BsmI GAATGC 1 cut(s) 395
Bsp1286I GDGCHC 2 cut(s) 106, 521
Bsp13I TCCGGA 1 cut(s) 203
Bsp143I GATC 2 cut(s) 55, 249
BspCNI CTCAG 1 cut(s) 7
BspEI TCCGGA 1 cut(s) 203
BspFNI CGCG 1 cut(s) 140
BspPI GGATC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 176
BsrI ACTGG 3 cut(s) 124, 388, 426
BssMI GATC 2 cut(s) 55, 249
BssSI CACGAG 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 441
Bst4CI ACNGT 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 58, 276
BstFNI CGCG 1 cut(s) 140
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 2 cut(s) 58, 252
BstMBI GATC 2 cut(s) 55, 249
BstNSI RCATGY 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 358
BstSLI GKGCMC 1 cut(s) 106
BstUI CGCG 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 326
BsuI GTATCC 1 cut(s) 316
BtsCI GGATG 2 cut(s) 58, 276
CaiI CAGNNNCTG 1 cut(s) 421
CfoI GCGC 1 cut(s) 142
Csp6I GTAC 2 cut(s) 460, 496
CviAII CATG 1 cut(s) 506
CviJI RGCY 2 cut(s) 81, 477
CviKI_1 RGCY 2 cut(s) 81, 477
CviQI GTAC 2 cut(s) 460, 496
DdeI CTNAG 1 cut(s) 15
DpnI GATC 2 cut(s) 57, 251
DpnII GATC 2 cut(s) 55, 249
DrdI GACNNNNNNGTC 1 cut(s) 199
DseDI GACNNNNNNGTC 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 511
FaeI CATG 1 cut(s) 509
FaiI YATR 5 cut(s) 69, 71, 374, 376, 507
FatI CATG 1 cut(s) 505
FauNDI CATATG 2 cut(s) 69, 374
FbaI TGATCA 1 cut(s) 55
FokI GGATG 2 cut(s) 65, 283
GlaI GCGC 1 cut(s) 141
HapII CCGG 3 cut(s) 182, 204, 359
HhaI GCGC 1 cut(s) 142
Hin1II CATG 1 cut(s) 509
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 5 cut(s) 11, 17, 227, 331, 439
HpaII CCGG 3 cut(s) 182, 204, 359
HphI GGTGA 4 cut(s) 55, 259, 340, 398
Hpy166II GTNNAC 3 cut(s) 63, 104, 117
Hpy188I TCNGA 5 cut(s) 16, 232, 262, 381, 516
Hpy188III TCNNGA 3 cut(s) 50, 204, 253
Hpy8I GTNNAC 3 cut(s) 63, 104, 117
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4V TGCA 2 cut(s) 104, 509
HpyF3I CTNAG 1 cut(s) 15
Hsp92II CATG 1 cut(s) 509
HspAI GCGC 1 cut(s) 140
Kpn2I TCCGGA 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 2 cut(s) 55, 249
LmnI GCTCC 1 cut(s) 516
LweI GCATC 2 cut(s) 253, 372
MaeIII GTNAC 2 cut(s) 190, 293
MalI GATC 2 cut(s) 57, 251
MboI GATC 2 cut(s) 55, 249
MboII GAAGA 4 cut(s) 181, 326, 358, 481
MhlI GDGCHC 2 cut(s) 106, 521
MluCI AATT 1 cut(s) 276
MlyI GAGTC 4 cut(s) 26, 236, 340, 433
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 3 cut(s) 24, 159, 298
Mph1103I ATGCAT 1 cut(s) 511
MroI TCCGGA 1 cut(s) 203
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 3 cut(s) 182, 204, 359
MspR9I CCNGG 1 cut(s) 360
Mva1269I GAATGC 1 cut(s) 395
MvnI CGCG 1 cut(s) 140
NciI CCSGG 1 cut(s) 360
NdeI CATATG 2 cut(s) 69, 374
NdeII GATC 2 cut(s) 55, 249
NlaIII CATG 1 cut(s) 509
NmeAIII GCCGAG 1 cut(s) 479
NmuCI GTSAC 1 cut(s) 190
NsiI ATGCAT 1 cut(s) 511
NspI RCATGY 1 cut(s) 509
PcsI WCGNNNNNNNCGW 1 cut(s) 439
PctI GAATGC 1 cut(s) 395
PfeI GAWTC 1 cut(s) 11
PleI GAGTC 4 cut(s) 25, 235, 339, 433
PpsI GAGTC 4 cut(s) 25, 235, 339, 433
PstNI CAGNNNCTG 1 cut(s) 421
RsaI GTAC 2 cut(s) 461, 497
RsaNI GTAC 2 cut(s) 460, 496
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 2 cut(s) 55, 249
SchI GAGTC 4 cut(s) 26, 236, 340, 433
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 2 cut(s) 106, 521
SetI ASST 3 cut(s) 215, 295, 479
SfaNI GCATC 2 cut(s) 253, 372
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 328
TaqI TCGA 1 cut(s) 337
TasI AATT 1 cut(s) 276
TatI WGTACW 1 cut(s) 459
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 3 cut(s) 86, 98, 287
VneI GTGCAC 1 cut(s) 102
XapI RAATTY 1 cut(s) 276
XceI RCATGY 1 cut(s) 509
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.