Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0014718

Physical Location & Seq

Genomic Coordinates Reverse (-)

9130473 .. 9132182

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGATGGTAGAGAAGAAAAGCTAAAGACCACCGATCGTAGCAACAGCATGGCAAATTCGACAGTTTTCTCCGACGAGATTCCGACCAACTTTCCTTCTTTTTCCGGCATGTTCGACATGCCATCTTCGTGCGAAGATCAAAAGGTTTCTCTGGGAGGGTTAATGGACTTGCTCGGAATCCCAGACTACGCTCCTTCTCTATTCGATTTCACTCAAACCACGTCGTCGCTCATGATGATGCCACCTCACCACCATCAACAACAATCACTCCCCTCTCCGGCATCTACTTCTACAGTTGTAGCGCTGCCGGAGAGGGAGAGTGCTACTACTACTAATACAACCTTGGAGATTTTGAATAATAGTACGGCGCCTACAACGCCGAACTCGTCTTCGATCTCTTCGTCGTCGAATGAAGCTGCGGCAAATAATAACGAGGAACAAAAGACAAAACTCCAGGAAGAGGAAGCCAATGAGCAAGATCCGGAGAAAACCCAGAAACAATTGCAACCGAAAAAGAAGAACCAAAAAAGGCAGAGGGAGCCGAAATTTGCGTTCATGACAAAGAGTGAGGTGGATAACCTAGATGATGGCTACCGATGGCGAAAATATGGCCAAAAAGCTGTAAAAAATAGCCCTTATCCCAGGAGCTATTATCGTTGCACCACTGCGGGCTGTGGTGTGAAGAAGAGGGTGGAGAGGTTGTCCGACGACCCCTCCACTGTGGTCACCACATACGAAGGCCAACACACGCATCCAAGTCCCATTACGCAGCGTGGCACAATGGGAATTGCACGGCTGCCGGATCAGTCTACTGGGTTTATATCTGCTGCGGCGGCTTCATCAAATCCCTTTGGTTTTCAGCAGTTTTTACCTTATCAACATCACTATCAACAGCAACAACAGCAGCAGCAGCAGCAGCAGCAATATGCTTATATGTATCAATCCTCCCCATCTTTGAATATCAGCTCATCCCCTTACGGTGGTGGTTCTGGTGGTGGTCCTTTTAATATCTCCTCATTTTCTACTGGTTTACTTCAAGAGAGGGATAATTTGGAAGGACCCGCTTTTTCTTCTTCGGCTTCCAATTTTCTTAGAGACCATGGACTTCTTCAGGATATCGTGCCGCAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

378

Amino Acids

41.73

Weight (kDa)

5.8

Isoelectric Point (pI)

70.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	195 - 252	1.5e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014718)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20230
malus_domestica	MD13G1150700.v1.1 MD16G1151000.v1.1
prunus_persica	Prupe.1G114800_v2.0.a1
pyrus_communis	pycom13g12950 pycom16g12920
rosa_chinensis	RchiOBHm_Chr4g0425801
rosa_laevigata	RLG00000007339
rosa_multiflora	Rmu_sc0007063.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367790
rosa_rugosa	Rorug04G0206200 Rorug04G0206300
rosa_samantha	Rh4AG263500 Rh4BG269400 Rh4CG281800 Rh4DG265800
rosa_wichuraiana	Rw4G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	367
AccI	GTMKAC	1 cut(s)	809
AccIII	TCCGGA	1 cut(s)	481
AciI	CCGC	6 cut(s)	419, 668, 830, 833, 1062, 1124
AclWI	GGATC	2 cut(s)	473, 810
AcoI	YGGCCR	1 cut(s)	610
AcsI	RAATTY	2 cut(s)	55, 545
AcuI	CTGAAG	1 cut(s)	1094
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	1 cut(s)	364
AfeI	AGCGCT	1 cut(s)	303
AfiI	CCNNNNNNNGG	3 cut(s)	277, 460, 980
AgsI	TTSAA	3 cut(s)	355, 958, 1037
AjiI	CACGTC	1 cut(s)	222
AjnI	CCWGG	2 cut(s)	453, 641
AluBI	AGCT	5 cut(s)	22, 416, 620, 648, 966
AluI	AGCT	5 cut(s)	22, 416, 620, 648, 966
Alw26I	GTCTC	1 cut(s)	1089
AlwI	GGATC	2 cut(s)	473, 810
Aor13HI	TCCGGA	1 cut(s)	481
Aor51HI	AGCGCT	1 cut(s)	303
AoxI	GGCC	2 cut(s)	610, 739
ApoI	RAATTY	2 cut(s)	55, 545
AspLEI	GCGC	2 cut(s)	304, 370
AspS9I	GGNCC	2 cut(s)	998, 1058
AsuHPI	GGTGA	2 cut(s)	239, 718
AvaII	GGWCC	2 cut(s)	998, 1058
BalI	TGGCCA	1 cut(s)	612
BanI	GGYRCC	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	381
BccI	CCATC	5 cut(s)	130, 261, 581, 591, 958
BceAI	ACGGC	2 cut(s)	381, 809
BciT130I	CCWGG	2 cut(s)	455, 643
BcoDI	GTCTC	1 cut(s)	1089
BfaI	CTAG	1 cut(s)	581
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	2 cut(s)	305, 371
Bme1390I	CCNGG	2 cut(s)	455, 643
Bme18I	GGWCC	2 cut(s)	998, 1058
BmgBI	CACGTC	1 cut(s)	222
BmgT120I	GGNCC	2 cut(s)	998, 1058
BmiI	GGNNCC	3 cut(s)	369, 540, 1060
BmrFI	CCNGG	2 cut(s)	455, 643
BmrI	ACTGGG	1 cut(s)	822
BmsI	GCATC	3 cut(s)	228, 290, 760
BmuI	ACTGGG	1 cut(s)	822
BpiI	GAAGAC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	1089
BsaJI	CCNNGG	3 cut(s)	342, 641, 1099
BsaWI	WCCGGW	1 cut(s)	481
BsaXI	ACNNNNNCTCC	6 cut(s)	252, 282, 686, 698, 716, 728
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 460, 980
Bse1I	ACTGG	2 cut(s)	817, 1030
BseAI	TCCGGA	1 cut(s)	481
BseBI	CCWGG	2 cut(s)	455, 643
BseDI	CCNNGG	3 cut(s)	342, 641, 1099
BseGI	GGATG	3 cut(s)	10, 751, 968
BseLI	CCNNNNNNNGG	3 cut(s)	277, 460, 980
BseNI	ACTGG	2 cut(s)	817, 1030
BseRI	GAGGAG	1 cut(s)	1003
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	2 cut(s)	612, 741
BshNI	GGYRCC	1 cut(s)	367
BsiEI	CGRYCG	1 cut(s)	37
BsiSI	CCGG	5 cut(s)	105, 278, 308, 482, 800
BslFI	GGGAC	1 cut(s)	744
BslI	CCNNNNNNNGG	3 cut(s)	277, 460, 980
BsmAI	GTCTC	1 cut(s)	1089
BsmFI	GGGAC	1 cut(s)	744
BsnI	GGCC	2 cut(s)	612, 741
Bso31I	GGTCTC	1 cut(s)	1089
Bsp13I	TCCGGA	1 cut(s)	481
Bsp143I	GATC	5 cut(s)	34, 136, 393, 478, 802
Bsp19I	CCATGG	1 cut(s)	1099
BspACI	CCGC	6 cut(s)	419, 668, 830, 833, 1062, 1124
BspANI	GGCC	2 cut(s)	612, 741
BspEI	TCCGGA	1 cut(s)	481
BspHI	TCATGA	2 cut(s)	231, 555
BspLI	GGNNCC	3 cut(s)	369, 540, 1060
BspPI	GGATC	2 cut(s)	473, 810
BspT107I	GGYRCC	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	1089
BsrI	ACTGG	2 cut(s)	817, 1030
BssECI	CCNNGG	3 cut(s)	342, 641, 1099
BssMI	GATC	5 cut(s)	34, 136, 393, 478, 802
BssNI	GRCGYC	1 cut(s)	368
BssT1I	CCWWGG	2 cut(s)	342, 1099
Bst2UI	CCWGG	2 cut(s)	455, 643
Bst4CI	ACNGT	4 cut(s)	64, 295, 721, 980
Bst6I	CTCTTC	3 cut(s)	403, 453, 680
BstACI	GRCGYC	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	1 cut(s)	1091
BstDSI	CCRYGG	1 cut(s)	1099
BstEII	GGTNACC	1 cut(s)	724
BstF5I	GGATG	3 cut(s)	10, 751, 968
BstH2I	RGCGCY	2 cut(s)	305, 371
BstHHI	GCGC	2 cut(s)	304, 370
BstKTI	GATC	5 cut(s)	37, 139, 396, 481, 805
BstMAI	GTCTC	1 cut(s)	1089
BstMBI	GATC	5 cut(s)	34, 136, 393, 478, 802
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	8 cut(s)	376, 538, 833, 901, 910, 913, 916, 919
BstNI	CCWGG	2 cut(s)	455, 643
BstNSI	RCATGY	2 cut(s)	112, 121
BstPI	GGTNACC	1 cut(s)	724
BstSCI	CCNGG	2 cut(s)	453, 641
BstSFI	CTRYAG	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BsuRI	GGCC	2 cut(s)	612, 741
BtgI	CCRYGG	1 cut(s)	1099
BtrI	CACGTC	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	10, 751, 968
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	2 cut(s)	663, 717
Cac8I	GCNNGC	1 cut(s)	670
CciI	TCATGA	2 cut(s)	231, 555
CfoI	GCGC	2 cut(s)	304, 370
Cfr13I	GGNCC	2 cut(s)	998, 1058
Csp6I	GTAC	1 cut(s)	363
CviAII	CATG	6 cut(s)	49, 109, 118, 232, 556, 1100
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	1 cut(s)	1091
DinI	GGCGCC	1 cut(s)	369
DpnI	GATC	5 cut(s)	36, 138, 395, 480, 804
DpnII	GATC	5 cut(s)	34, 136, 393, 478, 802
EaeI	YGGCCR	1 cut(s)	610
Eam1104I	CTCTTC	3 cut(s)	403, 453, 680
EarI	CTCTTC	3 cut(s)	403, 453, 680
Eco130I	CCWWGG	2 cut(s)	342, 1099
Eco31I	GGTCTC	1 cut(s)	1089
Eco32I	GATATC	1 cut(s)	1117
Eco47I	GGWCC	2 cut(s)	998, 1058
Eco47III	AGCGCT	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	1094
Eco91I	GGTNACC	1 cut(s)	724
EcoO109I	RGGNCCY	1 cut(s)	1058
EcoO65I	GGTNACC	1 cut(s)	724
EcoRII	CCWGG	2 cut(s)	453, 641
EcoRV	GATATC	1 cut(s)	1117
EcoT14I	CCWWGG	2 cut(s)	342, 1099
EgeI	GGCGCC	1 cut(s)	369
EheI	GGCGCC	1 cut(s)	369
ErhI	CCWWGG	2 cut(s)	342, 1099
FaeI	CATG	6 cut(s)	52, 112, 121, 235, 559, 1103
FaqI	GGGAC	1 cut(s)	744
FatI	CATG	6 cut(s)	48, 108, 117, 231, 555, 1099
FauI	CCCGC	2 cut(s)	661, 1069
FblI	GTMKAC	1 cut(s)	809
FokI	GGATG	3 cut(s)	17, 738, 955
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	2 cut(s)	303, 369
GsuI	CTGGAG	1 cut(s)	437
HaeII	RGCGCY	2 cut(s)	305, 371
HaeIII	GGCC	2 cut(s)	612, 741
HapII	CCGG	5 cut(s)	105, 278, 308, 482, 800
HhaI	GCGC	2 cut(s)	304, 370
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	6 cut(s)	52, 112, 121, 235, 559, 1103
Hin6I	GCGC	2 cut(s)	302, 368
HinP1I	GCGC	2 cut(s)	302, 368
HinfI	GANTC	2 cut(s)	79, 177
HpaII	CCGG	5 cut(s)	105, 278, 308, 482, 800
HphI	GGTGA	2 cut(s)	239, 718
Hpy166II	GTNNAC	2 cut(s)	810, 1031
Hpy188I	TCNGA	4 cut(s)	73, 84, 176, 706
Hpy188III	TCNNGA	5 cut(s)	232, 482, 556, 1037, 1112
Hpy8I	GTNNAC	2 cut(s)	810, 1031
Hpy99I	CGWCG	6 cut(s)	77, 226, 229, 406, 409, 710
HpyAV	CCTTC	4 cut(s)	105, 204, 731, 1049
HpyCH4III	ACNGT	4 cut(s)	64, 295, 721, 980
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	505, 660, 791
HpyF10VI	GCNNNNNNNGC	8 cut(s)	376, 538, 833, 901, 910, 913, 916, 919
HpyF3I	CTNAG	1 cut(s)	1091
HpySE526I	ACGT	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	6 cut(s)	52, 112, 121, 235, 559, 1103
HspAI	GCGC	2 cut(s)	302, 368
KasI	GGCGCC	1 cut(s)	367
Kpn2I	TCCGGA	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	34, 136, 393, 478, 802
LmnI	GCTCC	3 cut(s)	196, 538, 645
LweI	GCATC	3 cut(s)	228, 290, 760
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	5 cut(s)	36, 138, 395, 480, 804
MboI	GATC	5 cut(s)	34, 136, 393, 478, 802
MfeI	CAATTG	1 cut(s)	500
MflI	RGATCY	1 cut(s)	478
MlsI	TGGCCA	1 cut(s)	612
MluCI	AATT	6 cut(s)	55, 500, 545, 786, 1048, 1084
MluNI	TGGCCA	1 cut(s)	612
Mly113I	GGCGCC	1 cut(s)	368
MmeI	TCCRAC	3 cut(s)	96, 107, 729
Mox20I	TGGCCA	1 cut(s)	612
MroI	TCCGGA	1 cut(s)	481
MscI	TGGCCA	1 cut(s)	612
MseI	TTAA	2 cut(s)	161, 1005
MslI	CAYNNNNRTG	2 cut(s)	127, 236
Msp20I	TGGCCA	1 cut(s)	612
MspI	CCGG	5 cut(s)	105, 278, 308, 482, 800
MspR9I	CCNGG	2 cut(s)	455, 643
MunI	CAATTG	1 cut(s)	500
MvaI	CCWGG	2 cut(s)	455, 643
MwoI	GCNNNNNNNGC	8 cut(s)	376, 538, 833, 901, 910, 913, 916, 919
NarI	GGCGCC	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	1099
NdeII	GATC	5 cut(s)	34, 136, 393, 478, 802
NlaIII	CATG	6 cut(s)	52, 112, 121, 235, 559, 1103
NlaIV	GGNNCC	3 cut(s)	369, 540, 1060
NmuCI	GTSAC	1 cut(s)	724
NspI	RCATGY	2 cut(s)	112, 121
PagI	TCATGA	2 cut(s)	231, 555
PcsI	WCGNNNNNNNCGW	2 cut(s)	383, 398
PfeI	GAWTC	2 cut(s)	79, 177
PfoI	TCCNGGA	1 cut(s)	453
Ple19I	CGATCG	1 cut(s)	37
PluTI	GGCGCC	1 cut(s)	371
PpuMI	RGGWCCY	1 cut(s)	1058
Psp5II	RGGWCCY	1 cut(s)	1058
Psp6I	CCWGG	2 cut(s)	453, 641
PspEI	GGTNACC	1 cut(s)	724
PspGI	CCWGG	2 cut(s)	453, 641
PspN4I	GGNNCC	3 cut(s)	369, 540, 1060
PspPI	GGNCC	2 cut(s)	998, 1058
PspPPI	RGGWCCY	1 cut(s)	1058
PsuI	RGATCY	1 cut(s)	478
PvuI	CGATCG	1 cut(s)	37
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
RseI	CAYNNNNRTG	2 cut(s)	127, 236
SaqAI	TTAA	2 cut(s)	161, 1005
Sau3AI	GATC	5 cut(s)	34, 136, 393, 478, 802
Sau96I	GGNCC	2 cut(s)	998, 1058
ScrFI	CCNGG	2 cut(s)	455, 643
SfaNI	GCATC	3 cut(s)	228, 290, 760
SfcI	CTRYAG	1 cut(s)	291
SfoI	GGCGCC	1 cut(s)	369
SinI	GGWCC	2 cut(s)	998, 1058
SmiMI	CAYNNNNRTG	2 cut(s)	127, 236
Sse9I	AATT	6 cut(s)	55, 500, 545, 786, 1048, 1084
SsiI	CCGC	6 cut(s)	419, 668, 830, 833, 1062, 1124
SspDI	GGCGCC	1 cut(s)	367
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	2 cut(s)	453, 641
StyI	CCWWGG	2 cut(s)	342, 1099
TaaI	ACNGT	4 cut(s)	64, 295, 721, 980
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	5 cut(s)	59, 114, 204, 392, 407
TasI	AATT	6 cut(s)	55, 500, 545, 786, 1048, 1084
TauI	GCSGC	4 cut(s)	422, 833, 836, 1126
TfiI	GAWTC	2 cut(s)	79, 177
Tru1I	TTAA	2 cut(s)	161, 1005
Tru9I	TTAA	2 cut(s)	161, 1005
TscAI	CASTG	2 cut(s)	670, 724
TseFI	GTSAC	1 cut(s)	724
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	3 cut(s)	426, 544, 828
TspRI	CASTG	2 cut(s)	670, 724
VpaK11BI	GGWCC	2 cut(s)	998, 1058
XapI	RAATTY	2 cut(s)	55, 545
XceI	RCATGY	2 cut(s)	112, 121
XmiI	GTMKAC	1 cut(s)	809
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.