Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013936

Physical Location & Seq

Genomic Coordinates Forward (+)

9587997 .. 9588606

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCATACAGAATGTTGGATCCAAGCGATAAAGGATCGGAGTCGGACGAAATGACTATCAAAACCCCAGATGCCGGTTCCTCGGAGGAAGGCTTTAAGAAAACCTGCGCCGACTGTGGAACCTCCAAAACTCCTCTGTGGAGAGGCGGTCCGGCGGGCCCAAAGTCGCTTTGTAATGCGTGCGGGATCAGAAGCAGGAAGAAGAGGAGGGCTATTTTGGGATTAAACAAAGAAAACCCCAACGATAAAAAGGGCAAGAAGAACAAGCAGCTCGGCGACGGCTTGAAGCAGCGGCTGTTGGCTTTGGGAAGAGAGGTTTTGATGCAGCGATCGACGGTGGAGAGGCAGCAGAGGAAGCTCGGCGAGGAGGAACAAGCGGCGGTTCTGCTGATGGCCCTCTCATATGGCTCTGTCTATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

141

Amino Acids

15.35

Weight (kDa)

9.63

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	36 - 70	1.4e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06740 AT5G49300
fragaria_vesca	FvH4_4g19260
malus_domestica	MD13G1159000.v1.1 MD16G1159200.v1.1
prunus_persica	Prupe.1G126000_v2.0.a1
pyrus_communis	pycom13g13580 pycom16g13420
rosa_chinensis	RchiOBHm_Chr4g0424251
rosa_laevigata	RLG00000007493
rosa_multiflora	Rmu_sc0002260.1_g000027
rosa_roxburghii	Rroxscaffold_5G00366190
rosa_rugosa	Rorug04G0194600
rosa_samantha	Rh4BG257400 Rh4CG268100 Rh4DG251800
rosa_wichuraiana	Rw4G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	113
AciI	CCGC	6 cut(s)	147, 155, 183, 292, 377, 380
AclWI	GGATC	4 cut(s)	14, 27, 43, 194
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	286
AluBI	AGCT	2 cut(s)	271, 358
AluI	AGCT	2 cut(s)	271, 358
AlwI	GGATC	4 cut(s)	14, 27, 43, 194
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	2 cut(s)	157, 393
ApaI	GGGCCC	1 cut(s)	161
ApeKI	GCWGC	4 cut(s)	268, 289, 325, 346
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	4 cut(s)	149, 157, 158, 394
AvaII	GGWCC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	161
BbvI	GCAGC	4 cut(s)	280, 301, 337, 358
BccI	CCATC	1 cut(s)	385
BceAI	ACGGC	1 cut(s)	295
BfuAI	ACCTGC	1 cut(s)	113
BisI	GCNGC	6 cut(s)	269, 290, 293, 326, 347, 378
BlsI	GCNGC	6 cut(s)	270, 291, 294, 327, 348, 379
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	4 cut(s)	149, 157, 158, 394
BmiI	GGNNCC	4 cut(s)	21, 79, 121, 159
BmsI	GCATC	2 cut(s)	61, 312
BsaJI	CCNNGG	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseRI	GAGGAG	3 cut(s)	123, 220, 380
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	4 cut(s)	280, 301, 337, 358
Bsh1285I	CGRYCG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	159, 395
BsiEI	CGRYCG	1 cut(s)	332
BsiSI	CCGG	2 cut(s)	75, 152
BslI	CCNNNNNNNGG	1 cut(s)	74
BsnI	GGCC	2 cut(s)	159, 395
Bsp120I	GGGCCC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	4 cut(s)	19, 35, 186, 329
BspACI	CCGC	6 cut(s)	147, 155, 183, 292, 377, 380
BspANI	GGCC	2 cut(s)	159, 395
BspLI	GGNNCC	4 cut(s)	21, 79, 121, 159
BspMI	ACCTGC	1 cut(s)	113
BspPI	GGATC	4 cut(s)	14, 27, 43, 194
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	4 cut(s)	19, 35, 186, 329
Bst4CI	ACNGT	2 cut(s)	116, 337
Bst6I	CTCTTC	2 cut(s)	197, 304
BstC8I	GCNNGC	2 cut(s)	157, 181
BstDEI	CTNAG	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	4 cut(s)	22, 38, 189, 332
BstMBI	GATC	4 cut(s)	19, 35, 186, 329
BstMCI	CGRYCG	1 cut(s)	332
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	4 cut(s)	280, 301, 337, 358
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	159, 395
BveI	ACCTGC	1 cut(s)	113
Cac8I	GCNNGC	2 cut(s)	157, 181
CaiI	CAGNNNCTG	1 cut(s)	295
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	4 cut(s)	149, 157, 158, 394
CpoI	CGGWCCG	1 cut(s)	149
CspI	CGGWCCG	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	4 cut(s)	21, 37, 188, 331
DpnII	GATC	4 cut(s)	19, 35, 186, 329
Eam1104I	CTCTTC	2 cut(s)	197, 304
EarI	CTCTTC	2 cut(s)	197, 304
Eco24I	GRGCYC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	161
FaiI	YATR	4 cut(s)	7, 403, 405, 417
FauI	CCCGC	2 cut(s)	148, 176
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	6 cut(s)	269, 290, 293, 326, 347, 378
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	6 cut(s)	269, 290, 293, 326, 347, 378
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	6 cut(s)	269, 290, 293, 326, 347, 378
HaeIII	GGCC	2 cut(s)	159, 395
HapII	CCGG	2 cut(s)	75, 152
HhaI	GCGC	1 cut(s)	110
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	2 cut(s)	75, 152
Hpy188I	TCNGA	4 cut(s)	40, 46, 85, 191
Hpy99I	CGWCG	2 cut(s)	281, 337
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	2 cut(s)	116, 337
HpyCH4V	TGCA	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	1 cut(s)	420
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	4 cut(s)	19, 35, 186, 329
LpnPI	CCDG	5 cut(s)	81, 88, 118, 165, 181
Lsp1109I	GCAGC	4 cut(s)	280, 301, 337, 358
LweI	GCATC	2 cut(s)	61, 312
MalI	GATC	4 cut(s)	21, 37, 188, 331
MboI	GATC	4 cut(s)	19, 35, 186, 329
MboII	GAAGA	4 cut(s)	211, 214, 271, 321
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	24
MseI	TTAA	2 cut(s)	96, 224
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	2 cut(s)	75, 152
MwoI	GCNNNNNNNGC	1 cut(s)	355
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	4 cut(s)	19, 35, 186, 329
NlaIV	GGNNCC	4 cut(s)	21, 79, 121, 159
NmeAIII	GCCGAG	2 cut(s)	252, 339
PkrI	GCNGC	6 cut(s)	270, 291, 294, 327, 348, 379
Ple19I	CGATCG	1 cut(s)	332
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PspN4I	GGNNCC	4 cut(s)	21, 79, 121, 159
PspOMI	GGGCCC	1 cut(s)	157
PspPI	GGNCC	4 cut(s)	149, 157, 158, 394
PstNI	CAGNNNCTG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	19
PvuI	CGATCG	1 cut(s)	332
Rsr2I	CGGWCCG	1 cut(s)	149
RsrII	CGGWCCG	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	96, 224
SatI	GCNGC	6 cut(s)	269, 290, 293, 326, 347, 378
Sau3AI	GATC	4 cut(s)	19, 35, 186, 329
Sau96I	GGNCC	4 cut(s)	149, 157, 158, 394
SchI	GAGTC	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	5 cut(s)	107, 125, 273, 318, 360
SfaNI	GCATC	2 cut(s)	61, 312
SinI	GGWCC	1 cut(s)	149
SsiI	CCGC	6 cut(s)	147, 155, 183, 292, 377, 380
TaaI	ACNGT	2 cut(s)	116, 337
TaqI	TCGA	1 cut(s)	332
TauI	GCSGC	2 cut(s)	295, 380
Tru1I	TTAA	2 cut(s)	96, 224
Tru9I	TTAA	2 cut(s)	96, 224
TseI	GCWGC	4 cut(s)	268, 289, 325, 346
VpaK11BI	GGWCC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.