pycom16g14660

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0010939
Physical Location & Seq
Forward (+)
10722175 .. 10724424
2250 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 621 bp
ATGGAAACCAAGGATAAGCCAGCTGGTCCGGAAGTCCCGCTGCCATCAAAGGAGGAGTCCGAAGTCCCACCGCCATCAAAGGAGGAGCCCGAAGCCACGCCTCCTCCTCCCCCTAGACCCGACTACCTCTTTCTAGTTGATGTGGCTCTCAGGTTCATAGTGTTTGCAGCATCATTGACAAGTGTGTTGGTCATGGTCACCAGCAAGCAAACAGTATACCGAGGTCCTTTCCCAGTTCGGGCCAAGTTTAATCACTCTCCCGCCTTCATATACTTTGTGGTGGCTCTATCAGTTGCTGGCCTCTATGCTCTTCTTACAACACTAGCATGCATTTCAGTCATCTGGAAGCCAATTTGCCCACCAAAGTTGTTGCTCCATTTTGTATTTCTTGATGTACTGATACTGGGTTTGGTCGCCTCAGCCACCGGCACAGCCGCGGGTGTTGCATATATCGGATACAAGGGTAATGAACATATGATGTGGCAGAAGGTGTGCTCTGTTCTCGACAAGTATTGTAAGCATATAGTAGGCGCCCTCGCTACCTCGCTGTTTGCCTCAGTTTTGCTGGTTCTTCTGGTCTGGCTCTCCACTTTCACCCTCCACAAAAAAATTCGCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

207

Amino Acids

22.58

Weight (kDa)

9.02

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 45 - 188 2e-36 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010939)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06390 AT4G15610 AT4G15610
fragaria_vesca FvH4_4g17250
malus_domestica MD13G1173500.v1.1 MD16G1174700.v1.1
prunus_persica Prupe.1G141700_v2.0.a1 Prupe.1G141700_v2.0.a1
pyrus_communis pycom13g14910 pycom16g14660
rosa_chinensis RchiOBHm_Chr4g0421171
rosa_laevigata RLG00000007710
rosa_multiflora Rmu_sc0009290.1_g000005
rosa_roxburghii Rroxscaffold_5G00363470
rosa_rugosa Rorug04G0170000
rosa_samantha Rh4AG229700 Rh4BG232400 Rh4CG244000 Rh4DG228100
rosa_wichuraiana Rw4G020410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 530
AccI GTMKAC 1 cut(s) 216
AccII CGCG 1 cut(s) 437
AccIII TCCGGA 1 cut(s) 28
AciI CCGC 5 cut(s) 38, 71, 261, 435, 437
AcsI RAATTY 1 cut(s) 609
AcyI GRCGYC 1 cut(s) 531
AfaI GTAC 1 cut(s) 396
AfiI CCNNNNNNNGG 1 cut(s) 238
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw21I GWGCWC 1 cut(s) 497
AlwNI CAGNNNCTG 1 cut(s) 296
Aor13HI TCCGGA 1 cut(s) 28
AoxI GGCC 2 cut(s) 240, 298
ApeKI GCWGC 2 cut(s) 40, 167
ApoI RAATTY 1 cut(s) 609
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 3 cut(s) 26, 224, 240
AsuHPI GGTGA 2 cut(s) 190, 586
AvaII GGWCC 2 cut(s) 26, 224
BaeI ACNNNNGTAYC 2 cut(s) 448, 481
BanI GGYRCC 1 cut(s) 530
BanII GRGCYC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 497
BbvCI CCTCAGC 1 cut(s) 418
BbvI GCAGC 2 cut(s) 27, 179
BccI CCATC 2 cut(s) 52, 82
BciVI GTATCC 1 cut(s) 449
BfaI CTAG 3 cut(s) 114, 134, 323
BfoI RGCGCY 1 cut(s) 534
BfuI GTATCC 1 cut(s) 449
BisI GCNGC 3 cut(s) 41, 168, 435
BlsI GCNGC 3 cut(s) 42, 169, 436
Bme18I GGWCC 2 cut(s) 26, 224
BmgT120I GGNCC 3 cut(s) 26, 224, 240
BmiI GGNNCC 2 cut(s) 87, 532
BmrI ACTGGG 2 cut(s) 227, 413
BmsI GCATC 1 cut(s) 179
BmuI ACTGGG 2 cut(s) 227, 413
Bpu10I CCTNAGC 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 531
BsaJI CCNNGG 3 cut(s) 9, 220, 435
BsaWI WCCGGW 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse118I RCCGGY 1 cut(s) 425
Bse1I ACTGG 3 cut(s) 233, 408, 616
BseAI TCCGGA 1 cut(s) 28
BseDI CCNNGG 3 cut(s) 9, 220, 435
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 3 cut(s) 163, 432, 570
BseNI ACTGG 3 cut(s) 233, 408, 616
BseRI GAGGAG 4 cut(s) 68, 93, 96, 98
BseXI GCAGC 2 cut(s) 27, 179
Bsh1236I CGCG 1 cut(s) 437
BshFI GGCC 2 cut(s) 242, 300
BshNI GGYRCC 1 cut(s) 530
BsiHKAI GWGCWC 1 cut(s) 497
BsiSI CCGG 2 cut(s) 29, 426
BslFI GGGAC 2 cut(s) 20, 50
BslI CCNNNNNNNGG 1 cut(s) 238
BsmFI GGGAC 2 cut(s) 20, 50
BsnI GGCC 2 cut(s) 242, 300
Bsp1286I GDGCHC 2 cut(s) 90, 497
Bsp13I TCCGGA 1 cut(s) 28
BspACI CCGC 5 cut(s) 38, 71, 261, 435, 437
BspANI GGCC 2 cut(s) 242, 300
BspCNI CTCAG 3 cut(s) 162, 431, 569
BspEI TCCGGA 1 cut(s) 28
BspFNI CGCG 1 cut(s) 437
BspLI GGNNCC 2 cut(s) 87, 532
BspQI GCTCTTC 1 cut(s) 315
BspT107I GGYRCC 1 cut(s) 530
BsrFI RCCGGY 1 cut(s) 425
BsrI ACTGG 3 cut(s) 233, 408, 616
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 3 cut(s) 9, 220, 435
BssNAI GTATAC 1 cut(s) 217
BssNI GRCGYC 1 cut(s) 531
BssT1I CCWWGG 1 cut(s) 9
Bst1107I GTATAC 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 315
BstACI GRCGYC 1 cut(s) 531
BstC8I GCNNGC 4 cut(s) 21, 206, 298, 328
BstDEI CTNAG 3 cut(s) 149, 418, 556
BstDSI CCRYGG 1 cut(s) 435
BstEII GGTNACC 1 cut(s) 196
BstFNI CGCG 1 cut(s) 437
BstH2I RGCGCY 1 cut(s) 534
BstHHI GCGC 1 cut(s) 533
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstNSI RCATGY 1 cut(s) 330
BstPI GGTNACC 1 cut(s) 196
BstUI CGCG 1 cut(s) 437
BstV1I GCAGC 2 cut(s) 27, 179
BstZ17I GTATAC 1 cut(s) 217
BsuI GTATCC 1 cut(s) 449
BsuRI GGCC 2 cut(s) 242, 300
BtgI CCRYGG 1 cut(s) 435
Cac8I GCNNGC 4 cut(s) 21, 206, 298, 328
CaiI CAGNNNCTG 1 cut(s) 296
CfoI GCGC 1 cut(s) 533
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 3 cut(s) 26, 224, 240
Cfr42I CCGCGG 1 cut(s) 438
Csp6I GTAC 1 cut(s) 395
CspCI CAANNNNNGTGG 2 cut(s) 348, 383
CviAII CATG 2 cut(s) 193, 327
CviQI GTAC 1 cut(s) 395
DdeI CTNAG 3 cut(s) 149, 418, 556
DinI GGCGCC 1 cut(s) 532
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 26, 224
Eco91I GGTNACC 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 224
EcoO65I GGTNACC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 332
EcoT38I GRGCYC 1 cut(s) 90
EgeI GGCGCC 1 cut(s) 532
EheI GGCGCC 1 cut(s) 532
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 196, 330
FaqI GGGAC 2 cut(s) 20, 50
FatI CATG 2 cut(s) 192, 326
FauI CCCGC 3 cut(s) 45, 268, 430
FauNDI CATATG 1 cut(s) 474
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 41, 168, 435
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 3 cut(s) 41, 168, 435
FspBI CTAG 3 cut(s) 114, 134, 323
GlaI GCGC 1 cut(s) 532
GluI GCNGC 3 cut(s) 41, 168, 435
HaeII RGCGCY 1 cut(s) 534
HaeIII GGCC 2 cut(s) 242, 300
HapII CCGG 2 cut(s) 29, 426
HhaI GCGC 1 cut(s) 533
Hin1I GRCGYC 1 cut(s) 531
Hin1II CATG 2 cut(s) 196, 330
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HinfI GANTC 1 cut(s) 56
HpaII CCGG 2 cut(s) 29, 426
HphI GGTGA 2 cut(s) 190, 586
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 61, 455
Hpy188III TCNNGA 4 cut(s) 29, 343, 389, 503
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 274, 481
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 3 cut(s) 167, 330, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 3 cut(s) 149, 418, 556
Hsp92I GRCGYC 1 cut(s) 531
Hsp92II CATG 2 cut(s) 196, 330
HspAI GCGC 1 cut(s) 531
KasI GGCGCC 1 cut(s) 530
Kpn2I TCCGGA 1 cut(s) 28
KspI CCGCGG 1 cut(s) 438
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 2 cut(s) 85, 378
Lsp1109I GCAGC 2 cut(s) 27, 179
LweI GCATC 1 cut(s) 179
MaeI CTAG 3 cut(s) 114, 134, 323
MaeIII GTNAC 1 cut(s) 196
MboII GAAGA 2 cut(s) 302, 563
MhlI GDGCHC 2 cut(s) 90, 497
MluCI AATT 2 cut(s) 351, 609
Mly113I GGCGCC 1 cut(s) 531
MlyI GAGTC 1 cut(s) 65
Mph1103I ATGCAT 1 cut(s) 332
MroI TCCGGA 1 cut(s) 28
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 325
MspA1I CMGCKG 3 cut(s) 23, 40, 437
MspI CCGG 2 cut(s) 29, 426
MvnI CGCG 1 cut(s) 437
MwoI GCNNNNNNNGC 1 cut(s) 443
NarI GGCGCC 1 cut(s) 531
NdeI CATATG 1 cut(s) 474
NlaIII CATG 2 cut(s) 196, 330
NlaIV GGNNCC 2 cut(s) 87, 532
NmuCI GTSAC 1 cut(s) 196
NsiI ATGCAT 1 cut(s) 332
NspI RCATGY 1 cut(s) 330
PaeI GCATGC 1 cut(s) 330
PciSI GCTCTTC 1 cut(s) 315
PkrI GCNGC 3 cut(s) 42, 169, 436
PleI GAGTC 1 cut(s) 64
PluTI GGCGCC 1 cut(s) 534
PpsI GAGTC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
PspEI GGTNACC 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 87, 532
PspPI GGNCC 3 cut(s) 26, 224, 240
PspPPI RGGWCCY 1 cut(s) 224
PstNI CAGNNNCTG 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 1 cut(s) 396
RsaNI GTAC 1 cut(s) 395
RseI CAYNNNNRTG 1 cut(s) 325
SacII CCGCGG 1 cut(s) 438
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 3 cut(s) 41, 168, 435
Sau96I GGNCC 3 cut(s) 26, 224, 240
SchI GAGTC 1 cut(s) 65
SduI GDGCHC 2 cut(s) 90, 497
SetI ASST 6 cut(s) 25, 129, 155, 226, 492, 545
SfaNI GCATC 1 cut(s) 179
SfoI GGCGCC 1 cut(s) 532
Sfr303I CCGCGG 1 cut(s) 438
SgrBI CCGCGG 1 cut(s) 438
SinI GGWCC 2 cut(s) 26, 224
SmiMI CAYNNNNRTG 1 cut(s) 325
SphI GCATGC 1 cut(s) 330
Sse9I AATT 2 cut(s) 351, 609
SsiI CCGC 5 cut(s) 38, 71, 261, 435, 437
SspDI GGCGCC 1 cut(s) 530
SspMI CTAG 3 cut(s) 114, 134, 323
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 504
TasI AATT 2 cut(s) 351, 609
TatI WGTACW 1 cut(s) 394
TauI GCSGC 1 cut(s) 437
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 2 cut(s) 40, 167
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 3 cut(s) 145, 256, 483
VpaK11BI GGWCC 2 cut(s) 26, 224
XapI RAATTY 1 cut(s) 609
XceI RCATGY 1 cut(s) 330
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 3 cut(s) 114, 134, 323
Zsp2I ATGCAT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.