pycom16g15170

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013483
Physical Location & Seq
Forward (+)
11165711 .. 11166379
669 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 669 bp
ATGAGGGAAAATGGAGGGCTTGGTGAGATTTATGGGGAGATTGTGCCTGGTAAGGTTGATAGTGAGAGCTTCTGGTCTAGGTACTTTTATCGGGTGCATAAGCTGAAGGAAGCCGAGGAGGCGAGAGCGAAACTCGTGAATCGCGCAATTTTGGGCGAGGAAGAGGATTTGAGTTGGGATTTTGATGATGATGGTGATGATGATAAAGATAAAGTTGTAGGGAAGGAAGAGGGTGATGGGTCGGATATGAAGGTTGGTTCGAGTGTAGAGTTGGAGAAGCAAAAGCAAGCTTCTTGTGAAGGTGCTGCAAGGGAGGGTGACAATGTTGAGAGTGTTGAAGTTGCTGCAAGGGAGTCTGTGAGTAGTGATGGTGGGGATAAGGCAGAGTCGAAATCTGATGAAGTGTCGGAAGGGAAGACGGATGGTGGTGATTCTTGCAAAGAGAGTGACGTTTCGATTGTTTCGAGCCAGCCCTCAATGCCTGAGGAGGAGGATCTTGGGTGGGATGAGATTGAAGATTTAGGAAGCATTGATGAGAGCAAAGGGGATGCAACGGGGAGCAGTGCGAACAGAGCGAATTTACATAAGCGGCTCAGTGCAGCAGAGGAAGAGGAGGATTTGAGCTGGGATATCGAAGATGATGAAGACGACGGAGCTATTAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

223

Amino Acids

24.1

Weight (kDa)

4.14

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 2 - 41 1.2e-11 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13110
fragaria_vesca FvH4_4g14080
malus_domestica MD13G1179500.v1.1 MD16G1180600.v1.1
prunus_persica Prupe.1G148100_v2.0.a1
pyrus_communis pycom16g15160 pycom16g15170
rosa_chinensis RchiOBHm_Chr4g0419271
rosa_laevigata RLG00000007820
rosa_multiflora Rmu_co8252943.1_g000001 Rmu_sc0004932.1_g000005
rosa_roxburghii Rroxscaffold_5G00362260
rosa_rugosa Rorug04G0158000
rosa_samantha Rh4AG219700 Rh4BG221200 Rh4CG232500 Rh4DG218700
rosa_wichuraiana Rw4G018790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 144
AciI CCGC 1 cut(s) 589
AclWI GGATC 1 cut(s) 501
AcsI RAATTY 1 cut(s) 577
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 1 cut(s) 83
AgsI TTSAA 2 cut(s) 338, 515
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 5 cut(s) 69, 103, 290, 624, 656
AluI AGCT 5 cut(s) 69, 103, 290, 624, 656
AlwI GGATC 1 cut(s) 501
ApeKI GCWGC 3 cut(s) 305, 344, 599
ApoI RAATTY 1 cut(s) 577
AspLEI GCGC 1 cut(s) 146
AsuHPI GGTGA 5 cut(s) 35, 206, 245, 329, 440
AxyI CCTNAGG 1 cut(s) 483
BauI CACGAG 1 cut(s) 134
BbsI GAAGAC 2 cut(s) 422, 651
BbvI GCAGC 3 cut(s) 292, 331, 611
BccI CCATC 4 cut(s) 185, 230, 362, 416
BciT130I CCWGG 1 cut(s) 48
BfaI CTAG 1 cut(s) 78
BglI GCCNNNNNGGC 1 cut(s) 119
BisI GCNGC 4 cut(s) 306, 345, 590, 600
BlsI GCNGC 4 cut(s) 307, 346, 591, 601
Bme1390I CCNGG 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 1 cut(s) 538
BpiI GAAGAC 2 cut(s) 422, 651
BplI GAGNNNNNCTC 2 cut(s) 117, 149
BsaJI CCNNGG 1 cut(s) 114
Bse21I CCTNAGG 1 cut(s) 483
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 3 cut(s) 427, 511, 553
BseMII CTCAG 2 cut(s) 474, 607
BseRI GAGGAG 4 cut(s) 131, 500, 503, 626
BseXI GCAGC 3 cut(s) 292, 331, 611
BseYI CCCAGC 1 cut(s) 624
BsgI GTGCAG 1 cut(s) 618
Bsh1236I CGCG 1 cut(s) 144
Bsp143I GATC 1 cut(s) 493
BspACI CCGC 1 cut(s) 589
BspCNI CTCAG 2 cut(s) 475, 606
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 1 cut(s) 665
BspPI GGATC 1 cut(s) 501
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 1 cut(s) 493
BssSI CACGAG 1 cut(s) 134
Bst2BI CACGAG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 48
Bst6I CTCTTC 3 cut(s) 156, 222, 603
BstC8I GCNNGC 2 cut(s) 288, 470
BstDEI CTNAG 2 cut(s) 483, 593
BstF5I GGATG 3 cut(s) 427, 511, 553
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 1 cut(s) 496
BstMBI GATC 1 cut(s) 493
BstMWI GCNNNNNNNGC 3 cut(s) 119, 478, 572
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 292, 331, 611
BstV2I GAAGAC 2 cut(s) 422, 651
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
Bsu36I CCTNAGG 1 cut(s) 483
BtsCI GGATG 3 cut(s) 427, 511, 553
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 2 cut(s) 568, 601
Cac8I GCNNGC 2 cut(s) 288, 470
CciI TCATGA 1 cut(s) 665
CfoI GCGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 82
CviAII CATG 1 cut(s) 666
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 2 cut(s) 483, 593
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
Eam1104I CTCTTC 3 cut(s) 156, 222, 603
EarI CTCTTC 3 cut(s) 156, 222, 603
Eco32I GATATC 1 cut(s) 631
Eco57I CTGAAG 1 cut(s) 125
Eco81I CCTNAGG 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 46
EcoRV GATATC 1 cut(s) 631
FaeI CATG 1 cut(s) 669
FaiI YATR 5 cut(s) 33, 99, 248, 585, 667
FatI CATG 1 cut(s) 665
Fnu4HI GCNGC 4 cut(s) 306, 345, 590, 600
FokI GGATG 3 cut(s) 434, 518, 560
Fsp4HI GCNGC 4 cut(s) 306, 345, 590, 600
FspBI CTAG 1 cut(s) 78
GlaI GCGC 1 cut(s) 145
GluI GCNGC 4 cut(s) 306, 345, 590, 600
GsaI CCCAGC 1 cut(s) 628
HhaI GCGC 1 cut(s) 146
Hin1II CATG 1 cut(s) 669
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 4 cut(s) 139, 353, 386, 431
HphI GGTGA 5 cut(s) 35, 206, 245, 329, 440
Hpy188I TCNGA 3 cut(s) 244, 397, 409
Hpy188III TCNNGA 2 cut(s) 136, 666
Hpy99I CGWCG 1 cut(s) 653
HpyAV CCTTC 5 cut(s) 100, 217, 244, 293, 404
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 6 cut(s) 97, 308, 347, 438, 551, 599
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 478, 572
HpyF3I CTNAG 2 cut(s) 483, 593
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 1 cut(s) 669
HspAI GCGC 1 cut(s) 144
Kzo9I GATC 1 cut(s) 493
LmnI GCTCC 2 cut(s) 558, 653
LpnPI CCDG 6 cut(s) 33, 58, 60, 482, 495, 610
Lsp1109I GCAGC 3 cut(s) 292, 331, 611
LweI GCATC 1 cut(s) 538
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 2 cut(s) 317, 446
MalI GATC 1 cut(s) 495
MboI GATC 1 cut(s) 493
MboII GAAGA 7 cut(s) 173, 239, 427, 527, 620, 647, 656
MflI RGATCY 1 cut(s) 493
MluCI AATT 2 cut(s) 147, 577
MlyI GAGTC 2 cut(s) 362, 395
MmeI TCCRAC 3 cut(s) 222, 252, 387
MseI TTAA 1 cut(s) 660
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 119, 478, 572
NdeII GATC 1 cut(s) 493
NlaIII CATG 1 cut(s) 669
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 2 cut(s) 317, 446
PagI TCATGA 1 cut(s) 665
PcsI WCGNNNNNNNCGW 1 cut(s) 461
PfeI GAWTC 2 cut(s) 139, 431
PkrI GCNGC 4 cut(s) 307, 346, 591, 601
PleI GAGTC 2 cut(s) 361, 394
PpsI GAGTC 2 cut(s) 361, 394
Psp6I CCWGG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 624
PspGI CCWGG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 4 cut(s) 306, 345, 590, 600
Sau3AI GATC 1 cut(s) 493
SchI GAGTC 2 cut(s) 362, 395
ScrFI CCNGG 1 cut(s) 48
SfaNI GCATC 1 cut(s) 538
Sse9I AATT 2 cut(s) 147, 577
SsiI CCGC 1 cut(s) 589
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 46
TaiI ACGT 1 cut(s) 453
TaqI TCGA 5 cut(s) 260, 389, 455, 464, 633
TasI AATT 2 cut(s) 147, 577
TauI GCSGC 1 cut(s) 592
TfiI GAWTC 2 cut(s) 139, 431
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TscAI CASTG 2 cut(s) 568, 601
TseFI GTSAC 2 cut(s) 317, 446
TseI GCWGC 3 cut(s) 305, 344, 599
Tsp45I GTSAC 2 cut(s) 317, 446
TspDTI ATGAA 3 cut(s) 263, 414, 657
TspGWI ACGGA 2 cut(s) 434, 666
TspRI CASTG 2 cut(s) 568, 601
XapI RAATTY 1 cut(s) 577
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.