Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003389

Physical Location & Seq

Genomic Coordinates Forward (+)

11189918 .. 11193783

Gene Structure 3866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAGCAGCTTGTCAACTTTATTATTCGGCCTCCCAGGGCTGAATACGACCCAAAAAATGATTTGTTGGATGAAGAGTTCATACTGAAAGGGAAATGGTACCAAAGAAAGGATGTGGAGGTGAAAAATGGTCGGGGAGATGTCCTGAAGTGTAGTCATTACACGCCCATTGTTAGTCCAGGAGAAAAGCCTTTGCCTTGTGTAATATATTGTCATGGAAACAGTGGGTGCAGGGCTGATGCCAGTGAAGCAGCTATTATTTTGCTTCCATCAAATATTACAGTTTTCACTCTTGATTTCTCAGGATCCGGAATCTCCGGAGGAGATCACGTGACTTTAGGGTGGAATGAAAAGGATGACCTGAAGACTGTGGTTGATTATTTGCGAGCAGATGGAAATGTATCTTTAATTGGGTTGTGGGGCCGTTCAATGGGTGCTGTTACCAGTCTTTTGTATGGAGCTGAGGATCCGTCAATAGCAGGAATGGTTCTTGACAGTCCATTCTCTGATTTGGTTGATTTGATGATGGAATTGGTGGACACCTACAAAATTCGTTTGCCGAAGTTCACTGTGAAGTTTGCAATCCAATACATGCGAAGAGCTATCCAGAAAAAAGCAAAATTTGACATAATGAAATTGAACACCATTAAGGTGGCAAGCTCTTGCTTTGTTCCAGTTTTGTTTGGGCATGCCATTGATGATGATTTCATACAACCCCATCATTCAGATCGTATATTTGAGGCTTATATGGGAGACAAAAATATCATCAAATTTGAGGGATCGATCACAATTCTCCACGACCTCAATTCTACTTTGATTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

275

Amino Acids

30.62

Weight (kDa)

5.65

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S15	PF02129	46 - 173	7.5e-06	X-Pro dipeptidyl-peptidase (S15 family)
Hydrolase_4	PF12146	64 - 175	7.3e-11	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	66 - 183	4.3e-09	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23540 AT3G23540 AT3G23540 AT4G14290 AT4G14290 AT4G14290 AT4G14290 AT4G14290
fragaria_vesca	FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200 FvH4_4g14200
malus_domestica	MD13G1180700.v1.1 MD16G1181400.v1.1
prunus_persica	Prupe.1G148800_v2.0.a1 Prupe.1G148800_v2.0.a1
pyrus_communis	pycom12g09460 pycom12g09470 pycom12g09480 pycom13g15590 pycom16g15220
rosa_chinensis	RchiOBHm_Chr4g0419001
rosa_laevigata	RLG00000007834
rosa_multiflora	Rmu_sc0010159.1_g000002
rosa_roxburghii	Rroxscaffold_5G00362060
rosa_rugosa	Rorug04G0156000 Rorug04G0156000 Rorug04G0156000 Rorug04G0156100
rosa_samantha	Rh4AG217800 Rh4BG212400 Rh4DG216400
rosa_wichuraiana	Rw4G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	99
AccB1I	GGYRCC	1 cut(s)	99
AccIII	TCCGGA	2 cut(s)	308, 317
AclWI	GGATC	5 cut(s)	300, 313, 461, 474, 787
AcsI	RAATTY	3 cut(s)	549, 620, 770
AcuI	CTGAAG	2 cut(s)	167, 383
AcvI	CACGTG	1 cut(s)	331
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	109, 430
AgsI	TTSAA	2 cut(s)	429, 640
AjnI	CCWGG	2 cut(s)	35, 178
AloI	GAACNNNNNNTCC	2 cut(s)	62, 94
AluBI	AGCT	5 cut(s)	10, 254, 461, 602, 660
AluI	AGCT	5 cut(s)	10, 254, 461, 602, 660
Alw26I	GTCTC	1 cut(s)	747
AlwI	GGATC	5 cut(s)	300, 313, 461, 474, 787
Aor13HI	TCCGGA	2 cut(s)	308, 317
AoxI	GGCC	2 cut(s)	29, 421
ApeKI	GCWGC	2 cut(s)	7, 251
ApoI	RAATTY	3 cut(s)	549, 620, 770
Asp718I	GGTACC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	133
BamHI	GGATCC	2 cut(s)	305, 466
BanI	GGYRCC	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	66, 98
BbrPI	CACGTG	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	371
BbvCI	CCTCAGC	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	19, 263
BccI	CCATC	4 cut(s)	277, 386, 520, 726
BceAI	ACGGC	1 cut(s)	408
BciT130I	CCWGG	2 cut(s)	37, 180
BcoDI	GTCTC	1 cut(s)	747
BisI	GCNGC	2 cut(s)	8, 252
BlsI	GCNGC	2 cut(s)	9, 253
Bme1390I	CCNGG	2 cut(s)	37, 180
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	4 cut(s)	101, 307, 422, 468
BmrFI	CCNGG	2 cut(s)	37, 180
BmsI	GCATC	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	371
Bpu10I	CCTNAGC	1 cut(s)	462
Bsa29I	ATCGAT	1 cut(s)	782
BsaAI	YACGTR	1 cut(s)	331
BsaJI	CCNNGG	2 cut(s)	35, 36
BsaWI	WCCGGW	2 cut(s)	308, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 430
Bse1I	ACTGG	3 cut(s)	243, 444, 674
BseAI	TCCGGA	2 cut(s)	308, 317
BseBI	CCWGG	2 cut(s)	37, 180
BseCI	ATCGAT	1 cut(s)	782
BseDI	CCNNGG	2 cut(s)	35, 36
BseGI	GGATG	3 cut(s)	76, 118, 361
BseLI	CCNNNNNNNGG	2 cut(s)	109, 430
BseMII	CTCAG	2 cut(s)	315, 453
BseNI	ACTGG	3 cut(s)	243, 444, 674
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	19, 263
BsgI	GTGCAG	1 cut(s)	250
BshFI	GGCC	2 cut(s)	31, 423
BshNI	GGYRCC	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	782
BsiSI	CCGG	2 cut(s)	309, 318
BslI	CCNNNNNNNGG	2 cut(s)	109, 430
BsmAI	GTCTC	1 cut(s)	747
BsnI	GGCC	2 cut(s)	31, 423
Bsp13I	TCCGGA	2 cut(s)	308, 317
Bsp143I	GATC	6 cut(s)	305, 325, 466, 727, 779, 783
BspANI	GGCC	2 cut(s)	31, 423
BspCNI	CTCAG	2 cut(s)	314, 454
BspDI	ATCGAT	1 cut(s)	782
BspEI	TCCGGA	2 cut(s)	308, 317
BspLI	GGNNCC	4 cut(s)	101, 307, 422, 468
BspPI	GGATC	5 cut(s)	300, 313, 461, 474, 787
BspQI	GCTCTTC	1 cut(s)	592
BspT107I	GGYRCC	1 cut(s)	99
BsrI	ACTGG	3 cut(s)	243, 444, 674
BssECI	CCNNGG	2 cut(s)	35, 36
BssMI	GATC	6 cut(s)	305, 325, 466, 727, 779, 783
Bst2UI	CCWGG	2 cut(s)	37, 180
Bst4CI	ACNGT	5 cut(s)	224, 283, 370, 497, 571
Bst6I	CTCTTC	2 cut(s)	69, 592
BstBAI	YACGTR	1 cut(s)	331
BstC8I	GCNNGC	3 cut(s)	387, 658, 690
BstDEI	CTNAG	2 cut(s)	301, 462
BstF5I	GGATG	3 cut(s)	76, 118, 361
BstKTI	GATC	6 cut(s)	308, 328, 469, 730, 782, 786
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	6 cut(s)	305, 325, 466, 727, 779, 783
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	2 cut(s)	37, 180
BstNSI	RCATGY	2 cut(s)	595, 692
BstSCI	CCNGG	2 cut(s)	35, 178
BstV1I	GCAGC	2 cut(s)	19, 263
BstV2I	GAAGAC	1 cut(s)	371
BstX2I	RGATCY	2 cut(s)	305, 466
BstXI	CCANNNNNNTGG	1 cut(s)	652
BstYI	RGATCY	2 cut(s)	305, 466
Bsu15I	ATCGAT	1 cut(s)	782
BsuRI	GGCC	2 cut(s)	31, 423
BsuTUI	ATCGAT	1 cut(s)	782
BtsCI	GGATG	3 cut(s)	76, 118, 361
BtsIMutI	CAGTG	3 cut(s)	229, 250, 567
Cac8I	GCNNGC	3 cut(s)	387, 658, 690
Cfr13I	GGNCC	1 cut(s)	421
ClaI	ATCGAT	1 cut(s)	782
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	3 cut(s)	215, 592, 689
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	301, 462
DpnI	GATC	6 cut(s)	307, 327, 468, 729, 781, 785
DpnII	GATC	6 cut(s)	305, 325, 466, 727, 779, 783
Eam1104I	CTCTTC	2 cut(s)	69, 592
EarI	CTCTTC	2 cut(s)	69, 592
Eco57I	CTGAAG	2 cut(s)	167, 383
Eco72I	CACGTG	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	35, 178
FaeI	CATG	3 cut(s)	218, 595, 692
FatI	CATG	3 cut(s)	214, 591, 688
Fnu4HI	GCNGC	2 cut(s)	8, 252
FokI	GGATG	3 cut(s)	83, 125, 368
Fsp4HI	GCNGC	2 cut(s)	8, 252
GluI	GCNGC	2 cut(s)	8, 252
HaeIII	GGCC	2 cut(s)	31, 423
HapII	CCGG	2 cut(s)	309, 318
Hin1II	CATG	3 cut(s)	218, 595, 692
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	2 cut(s)	312, 817
HpaII	CCGG	2 cut(s)	309, 318
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	3 cut(s)	16, 538, 567
Hpy188I	TCNGA	2 cut(s)	508, 727
Hpy188III	TCNNGA	7 cut(s)	145, 293, 303, 309, 318, 491, 607
Hpy8I	GTNNAC	3 cut(s)	16, 538, 567
HpyCH4III	ACNGT	5 cut(s)	224, 283, 370, 497, 571
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	2 cut(s)	231, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	2 cut(s)	301, 462
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	218, 595, 692
Kpn2I	TCCGGA	2 cut(s)	308, 317
KpnI	GGTACC	1 cut(s)	103
Kzo9I	GATC	6 cut(s)	305, 325, 466, 727, 779, 783
LguI	GCTCTTC	1 cut(s)	592
LmnI	GCTCC	2 cut(s)	4, 458
Lsp1109I	GCAGC	2 cut(s)	19, 263
LweI	GCATC	1 cut(s)	229
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	331, 439
MalI	GATC	6 cut(s)	307, 327, 468, 729, 781, 785
MboI	GATC	6 cut(s)	305, 325, 466, 727, 779, 783
MboII	GAAGA	3 cut(s)	86, 376, 609
MflI	RGATCY	2 cut(s)	305, 466
MluCI	AATT	8 cut(s)	408, 530, 549, 620, 635, 770, 789, 805
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	7 cut(s)	42, 112, 314, 457, 733, 769, 812
MroI	TCCGGA	2 cut(s)	308, 317
MseI	TTAA	2 cut(s)	407, 648
MslI	CAYNNNNRTG	1 cut(s)	650
MspI	CCGG	2 cut(s)	309, 318
MspR9I	CCNGG	2 cut(s)	37, 180
MvaI	CCWGG	2 cut(s)	37, 180
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	6 cut(s)	305, 325, 466, 727, 779, 783
NlaIII	CATG	3 cut(s)	218, 595, 692
NlaIV	GGNNCC	4 cut(s)	101, 307, 422, 468
NmuCI	GTSAC	1 cut(s)	331
NspI	RCATGY	2 cut(s)	595, 692
PaeI	GCATGC	1 cut(s)	692
PasI	CCCWGGG	1 cut(s)	36
PciSI	GCTCTTC	1 cut(s)	592
PfeI	GAWTC	2 cut(s)	312, 817
PfoI	TCCNGGA	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	9, 253
PmaCI	CACGTG	1 cut(s)	331
PmlI	CACGTG	1 cut(s)	331
Ppu21I	YACGTR	1 cut(s)	331
Psp6I	CCWGG	2 cut(s)	35, 178
PspCI	CACGTG	1 cut(s)	331
PspGI	CCWGG	2 cut(s)	35, 178
PspN4I	GGNNCC	4 cut(s)	101, 307, 422, 468
PspPI	GGNCC	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	305, 466
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	650
SapI	GCTCTTC	1 cut(s)	592
SaqAI	TTAA	2 cut(s)	407, 648
SatI	GCNGC	2 cut(s)	8, 252
Sau3AI	GATC	6 cut(s)	305, 325, 466, 727, 779, 783
Sau96I	GGNCC	1 cut(s)	421
ScrFI	CCNGG	2 cut(s)	37, 180
SfaNI	GCATC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	650
SphI	GCATGC	1 cut(s)	692
Sse9I	AATT	8 cut(s)	408, 530, 549, 620, 635, 770, 789, 805
SspI	AATATT	1 cut(s)	277
StyD4I	CCNGG	2 cut(s)	35, 178
TaaI	ACNGT	5 cut(s)	224, 283, 370, 497, 571
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	782
TasI	AATT	8 cut(s)	408, 530, 549, 620, 635, 770, 789, 805
TfiI	GAWTC	2 cut(s)	312, 817
Tru1I	TTAA	2 cut(s)	407, 648
Tru9I	TTAA	2 cut(s)	407, 648
TscAI	CASTG	3 cut(s)	229, 250, 574
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	2 cut(s)	7, 251
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	5 cut(s)	70, 87, 363, 647, 697
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	3 cut(s)	229, 250, 574
XapI	RAATTY	3 cut(s)	549, 620, 770
XceI	RCATGY	2 cut(s)	595, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.