pycom16g16390

Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013033
Physical Location & Seq
Forward (+)
12316143 .. 12316851
709 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 636 bp
ATGATGTTCTTAAGGAGAGGAATCACATTTGCTTCAGCACTATCTCCGCATTTCCTTTCAAGGGCTGCTCCTAACTTTTGCTGCAAGCCAACCACCACTACCATAATTCCCGTACCTGATCATTCAAGAAAGGCTCCCAATTACTTTACTAGCTTTCATCTCTCTCCGTTGTTACCCTCGGATGATTCTAAACCTCATTCAGACAGTTATGGTGTTCAGCTTGTTGATGATGCTGCGTGGCAGGTTTCGTCCGGGTTGGCATTGGCAGGGGGAGGAATGCAGGGGTCTGCATTGGACTCAAATGCGTTATCGGATGAAGTGGTTGATGAGCCAATTGACAGTTGCAGAGCAGCTGTTGAAGGTGATCCGGATTTTGATGACATTGACAACATGAGAATTCGCGGCAGTCTCTTCTTTAAGCTTGACCGAGATTCCAAGGAGTTTGAAGAGTACAATTTCGACTTCCATCGTAGGAAGAAGTCTTCTAAGCAAAAGGATGACCCAAAGGAAAGTCAAAGGAAGGGAAATGAGTTAAATGATATTGTGAATTGCCCTCCAGAAGCAAGAAGCAAACTAGAATTGTGGACGATTCTCCACTTGATGAATTGTACACTCCTGTTGGGAAGAAGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

212

Amino Acids

23.61

Weight (kDa)

5.68

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22450 AT3G22450
fragaria_vesca FvH4_4g15620
malus_domestica MD13G1193200.v1.1 MD16G1194100.v1.1
prunus_persica Prupe.1G013800_v2.0.a1
pyrus_communis pycom13g16550 pycom16g16390
rosa_chinensis RchiOBHm_Chr4g0416191
rosa_laevigata RLG00000008007
rosa_multiflora Rmu_sc0001145.1_g000002
rosa_roxburghii Rroxscaffold_5G00360050
rosa_rugosa Rorug04G0139800
rosa_samantha Rh4AG201800 Rh4BG199200 Rh4CG214100 Rh4DG199000
rosa_wichuraiana Rw4G017060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 232
AccII CGCG 1 cut(s) 402
AccIII TCCGGA 1 cut(s) 367
AciI CCGC 2 cut(s) 47, 402
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 1 cut(s) 396
AcuI CTGAAG 1 cut(s) 18
AfaI GTAC 3 cut(s) 114, 452, 610
AfiI CCNNNNNNNGG 1 cut(s) 61
AflII CTTAAG 1 cut(s) 10
AgsI TTSAA 4 cut(s) 60, 126, 359, 446
AluBI AGCT 5 cut(s) 153, 220, 353, 421, 633
AluI AGCT 5 cut(s) 153, 220, 353, 421, 633
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 1 cut(s) 359
Aor13HI TCCGGA 1 cut(s) 367
ApeKI GCWGC 4 cut(s) 65, 81, 233, 350
ApoI RAATTY 1 cut(s) 396
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 374
BbsI GAAGAC 1 cut(s) 474
BbvI GCAGC 4 cut(s) 52, 68, 220, 362
BccI CCATC 1 cut(s) 474
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 2 cut(s) 150, 575
BfrI CTTAAG 1 cut(s) 10
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 5 cut(s) 66, 82, 234, 351, 403
BlsI GCNGC 5 cut(s) 67, 83, 235, 352, 404
Bme1390I CCNGG 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 474
BpmI CTGGAG 1 cut(s) 540
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 177, 435
BsaWI WCCGGW 1 cut(s) 367
Bsc4I CCNNNNNNNGG 1 cut(s) 61
BseAI TCCGGA 1 cut(s) 367
BseDI CCNNGG 2 cut(s) 177, 435
BseGI GGATG 3 cut(s) 187, 319, 502
BseLI CCNNNNNNNGG 1 cut(s) 61
BseXI GCAGC 4 cut(s) 52, 68, 220, 362
Bsh1236I CGCG 1 cut(s) 402
BsiSI CCGG 2 cut(s) 252, 368
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 413
BsmI GAATGC 1 cut(s) 282
Bsp13I TCCGGA 1 cut(s) 367
Bsp1407I TGTACA 1 cut(s) 608
Bsp143I GATC 2 cut(s) 118, 364
BspACI CCGC 2 cut(s) 47, 402
BspEI TCCGGA 1 cut(s) 367
BspFNI CGCG 1 cut(s) 402
BspLI GGNNCC 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 1 cut(s) 359
BspTI CTTAAG 1 cut(s) 10
BsrGI TGTACA 1 cut(s) 608
BssECI CCNNGG 2 cut(s) 177, 435
BssMI GATC 2 cut(s) 118, 364
BssT1I CCWWGG 1 cut(s) 435
Bst4CI ACNGT 2 cut(s) 206, 341
Bst6I CTCTTC 2 cut(s) 416, 441
BstAFI CTTAAG 1 cut(s) 10
BstAUI TGTACA 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 486
BstF5I GGATG 3 cut(s) 187, 319, 502
BstFNI CGCG 1 cut(s) 402
BstKTI GATC 2 cut(s) 121, 367
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 2 cut(s) 118, 364
BstSCI CCNGG 1 cut(s) 251
BstUI CGCG 1 cut(s) 402
BstV1I GCAGC 4 cut(s) 52, 68, 220, 362
BstV2I GAAGAC 1 cut(s) 474
BtsCI GGATG 3 cut(s) 187, 319, 502
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 86
Csp6I GTAC 3 cut(s) 113, 451, 609
CviAII CATG 1 cut(s) 391
CviJI RGCY 9 cut(s) 65, 88, 134, 153, 220, 331, 353, 421, 633
CviKI_1 RGCY 9 cut(s) 65, 88, 134, 153, 220, 331, 353, 421, 633
CviQI GTAC 3 cut(s) 113, 451, 609
DdeI CTNAG 1 cut(s) 486
DpnI GATC 2 cut(s) 120, 366
DpnII GATC 2 cut(s) 118, 364
Eam1104I CTCTTC 2 cut(s) 416, 441
EarI CTCTTC 2 cut(s) 416, 441
Eco130I CCWWGG 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 1 cut(s) 394
FaiI YATR 3 cut(s) 104, 210, 392
FatI CATG 1 cut(s) 390
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 5 cut(s) 66, 82, 234, 351, 403
FokI GGATG 3 cut(s) 194, 326, 509
Fsp4HI GCNGC 5 cut(s) 66, 82, 234, 351, 403
FspBI CTAG 2 cut(s) 150, 575
GluI GCNGC 5 cut(s) 66, 82, 234, 351, 403
GsuI CTGGAG 1 cut(s) 540
HapII CCGG 2 cut(s) 252, 368
Hin1II CATG 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 419
HinfI GANTC 5 cut(s) 21, 185, 296, 431, 589
HpaII CCGG 2 cut(s) 252, 368
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 2 cut(s) 585, 611
Hpy188I TCNGA 3 cut(s) 181, 202, 313
Hpy188III TCNNGA 3 cut(s) 126, 368, 557
Hpy8I GTNNAC 2 cut(s) 585, 611
HpyAV CCTTC 2 cut(s) 353, 514
HpyCH4III ACNGT 2 cut(s) 206, 341
HpyCH4V TGCA 4 cut(s) 84, 280, 290, 345
HpyF3I CTNAG 1 cut(s) 486
Hsp92II CATG 1 cut(s) 394
Kpn2I TCCGGA 1 cut(s) 367
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 118, 364
LmnI GCTCC 2 cut(s) 73, 139
LpnPI CCDG 8 cut(s) 129, 227, 252, 265, 266, 381, 570, 629
Lsp1109I GCAGC 4 cut(s) 52, 68, 220, 362
LweI GCATC 1 cut(s) 220
MaeI CTAG 2 cut(s) 150, 575
MaeIII GTNAC 1 cut(s) 171
MalI GATC 2 cut(s) 120, 366
MboI GATC 2 cut(s) 118, 364
MboII GAAGA 5 cut(s) 403, 458, 474, 487, 636
MfeI CAATTG 1 cut(s) 333
MluCI AATT 8 cut(s) 105, 139, 333, 396, 454, 547, 578, 604
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 5 cut(s) 11, 187, 204, 266, 564
MroI TCCGGA 1 cut(s) 367
MseI TTAA 3 cut(s) 11, 417, 533
MspA1I CMGCKG 1 cut(s) 353
MspCI CTTAAG 1 cut(s) 10
MspI CCGG 2 cut(s) 252, 368
MspR9I CCNGG 1 cut(s) 253
MunI CAATTG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 282
MvnI CGCG 1 cut(s) 402
NciI CCSGG 1 cut(s) 253
NdeII GATC 2 cut(s) 118, 364
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 1 cut(s) 135
PctI GAATGC 1 cut(s) 282
PfeI GAWTC 4 cut(s) 21, 185, 431, 589
PkrI GCNGC 5 cut(s) 67, 83, 235, 352, 404
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 135
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 3 cut(s) 114, 452, 610
RsaNI GTAC 3 cut(s) 113, 451, 609
SaqAI TTAA 3 cut(s) 11, 417, 533
SatI GCNGC 5 cut(s) 66, 82, 234, 351, 403
Sau3AI GATC 2 cut(s) 118, 364
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 253
SetI ASST 9 cut(s) 118, 155, 196, 222, 246, 355, 364, 423, 635
SfaNI GCATC 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 8 cut(s) 105, 139, 333, 396, 454, 547, 578, 604
SsiI CCGC 2 cut(s) 47, 402
SspMI CTAG 2 cut(s) 150, 575
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 2 cut(s) 206, 341
TaqI TCGA 1 cut(s) 459
TaqII GACCGA 1 cut(s) 441
TasI AATT 8 cut(s) 105, 139, 333, 396, 454, 547, 578, 604
TatI WGTACW 2 cut(s) 450, 608
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 4 cut(s) 21, 185, 431, 589
Tru1I TTAA 3 cut(s) 11, 417, 533
Tru9I TTAA 3 cut(s) 11, 417, 533
TseI GCWGC 4 cut(s) 65, 81, 233, 350
TspDTI ATGAA 3 cut(s) 146, 330, 617
TspGWI ACGGA 1 cut(s) 156
Vha464I CTTAAG 1 cut(s) 10
XapI RAATTY 1 cut(s) 396
XspI CTAG 2 cut(s) 150, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.