Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009903

Physical Location & Seq

Genomic Coordinates Forward (+)

12451774 .. 12453294

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGATTGTTTTGCATGGATCCAATGCACACCTCTTTTCACTTGGTGATTCACAATTCACCATAAAGTTGTACACATTTCCAGCTCCTACGGAACCACAAATTTCCTTCCGATTTCGACACAAAATATCAGATACTATGGAGATTTTCATGCCGTTCCCCCGTCTAGTTATGGCAATGGCAGTGGCTCTGGTCCTGGCTCTGCCAGTCTCCGCCCAAGTCAGCTCCCCTTGCACCGCCAACATGATTTCTAGCTTGTCCCCTTGCATGAGTTATCTCACTAATAGCAGCGCCAATGGTACATCACCAACCGCATCCTGCTGCAATTCGCTAAAATCCGTCACAAGTACTAGCAGGGACTGTGTGTGCCTCCTTGTGACTGGAAGCGTTCCCTTCCAGTTGCCAATCAACCGGACTCTAGCCCTCTCTCTTCCTCGTGCCTGCAACATCCCCGGTGTCCCTCTCCAATGCCAAGCCGCTGGTGCACCCAGTCCTGCTCCAGGCTCCCTGTCGCCAACTCTTTCTCCTGGAGCTTCACCATCTGCTCCAACAGCTTCCTCTGTCCCAGAACCCACCTCATCAGCTGAGTCACCGGAATCCGACAACACACAAGGTTTAACTCCACCATCTACAACAGGGGGCTCTGCAGCTCCAACTGCAACTACTGGGAGCCGCCCGGTTCTGACTCCATCAGCTGCCACGCCCTCTTACTCGCCTTCTCTTCTGCTATTGGCATCCGGCGTTCTAGCTTTCAAGTTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

254

Amino Acids

25.91

Weight (kDa)

8.15

Isoelectric Point (pI)

64.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	58 - 156	1.3e-20	Probable lipid transfer
Tryp_alpha_amyl	PF00234	81 - 156	2e-08	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05450 AT3G22620
fragaria_vesca	FvH4_4g16090 FvH4_4g16090
malus_domestica	MD13G1196300.v1.1 MD16G1196800.v1.1
prunus_persica	Prupe.1G017000_v2.0.a1
pyrus_communis	pycom13g16840 pycom16g16560
rosa_chinensis	RchiOBHm_Chr4g0415631
rosa_laevigata	RLG00000008055
rosa_multiflora	Rmu_sc0001194.1_g000009 Rmu_sc0004599.1_g000011 Rmu_sc0038888.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359450
rosa_rugosa	Rorug04G0136100
rosa_samantha	Rh4AG196600 Rh4BG195200 Rh4CG207400 Rh4DG194500
rosa_wichuraiana	Rw4G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	210, 234, 309, 474, 670
AclWI	GGATC	2 cut(s)	12, 25
AcsI	RAATTY	1 cut(s)	99
AdeI	CACNNNGTG	1 cut(s)	44
AfaI	GTAC	3 cut(s)	71, 298, 346
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	1 cut(s)	751
AjnI	CCWGG	3 cut(s)	192, 496, 523
AluBI	AGCT	9 cut(s)	83, 222, 252, 530, 551, 581, 647, 692, 746
AluI	AGCT	9 cut(s)	83, 222, 252, 530, 551, 581, 647, 692, 746
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	1 cut(s)	211
Alw44I	GTGCAC	1 cut(s)	480
AlwI	GGATC	2 cut(s)	12, 25
AlwNI	CAGNNNCTG	1 cut(s)	357
ApaLI	GTGCAC	1 cut(s)	480
ApeKI	GCWGC	4 cut(s)	285, 318, 644, 692
ApoI	RAATTY	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	2 cut(s)	450, 674
AsuHPI	GGTGA	5 cut(s)	49, 56, 294, 525, 579
AvaII	GGWCC	1 cut(s)	190
BaeGI	GKGCMC	1 cut(s)	484
BamHI	GGATCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	641
BauI	CACGAG	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	4 cut(s)	297, 305, 656, 679
BccI	CCATC	3 cut(s)	544, 631, 694
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	3 cut(s)	194, 498, 525
BcnI	CCSGG	2 cut(s)	450, 674
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	6 cut(s)	164, 249, 348, 416, 743, 760
BfmI	CTRYAG	1 cut(s)	642
BfoI	RGCGCY	1 cut(s)	291
BisI	GCNGC	6 cut(s)	286, 319, 474, 645, 670, 693
BlsI	GCNGC	6 cut(s)	287, 320, 475, 646, 671, 694
BmcAI	AGTACT	1 cut(s)	346
Bme1390I	CCNGG	5 cut(s)	194, 450, 498, 525, 674
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	4 cut(s)	19, 93, 502, 668
BmrFI	CCNGG	5 cut(s)	194, 450, 498, 525, 674
BmrI	ACTGGG	2 cut(s)	480, 672
BmsI	GCATC	2 cut(s)	320, 740
BmuI	ACTGGG	2 cut(s)	480, 672
BpmI	CTGGAG	2 cut(s)	480, 546
BpuMI	CCSGG	2 cut(s)	450, 674
BsaJI	CCNNGG	1 cut(s)	448
BsaWI	WCCGGW	2 cut(s)	408, 589
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	5 cut(s)	203, 382, 394, 486, 667
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	3 cut(s)	194, 498, 525
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	3 cut(s)	311, 444, 731
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	5 cut(s)	203, 382, 394, 486, 667
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	4 cut(s)	297, 305, 656, 679
BsiHKAI	GWGCWC	1 cut(s)	484
BsiSI	CCGG	5 cut(s)	409, 450, 590, 674, 735
BslFI	GGGAC	4 cut(s)	241, 368, 440, 545
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	211
BsmFI	GGGAC	4 cut(s)	241, 368, 440, 545
Bsp1286I	GDGCHC	2 cut(s)	484, 641
Bsp1407I	TGTACA	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	5 cut(s)	210, 234, 309, 474, 670
BspCNI	CTCAG	1 cut(s)	574
BspLI	GGNNCC	4 cut(s)	19, 93, 502, 668
BspMAI	CTGCAG	1 cut(s)	646
BspPI	GGATC	2 cut(s)	12, 25
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	69
BsrI	ACTGG	5 cut(s)	203, 382, 394, 486, 667
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	1 cut(s)	17
BssSI	CACGAG	1 cut(s)	432
Bst2BI	CACGAG	1 cut(s)	432
Bst2UI	CCWGG	3 cut(s)	194, 498, 525
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	2 cut(s)	432, 723
BstAUI	TGTACA	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	1 cut(s)	582
BstENI	CCTNNNNNAGG	1 cut(s)	495
BstF5I	GGATG	3 cut(s)	311, 444, 731
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	4 cut(s)	228, 479, 548, 653
BstNI	CCWGG	3 cut(s)	194, 498, 525
BstSCI	CCNGG	5 cut(s)	192, 448, 496, 523, 672
BstSFI	CTRYAG	1 cut(s)	642
BstSLI	GKGCMC	1 cut(s)	484
BstV1I	GCAGC	4 cut(s)	297, 305, 656, 679
BstX2I	RGATCY	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	17
BtsCI	GGATG	3 cut(s)	311, 444, 731
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	439
CaiI	CAGNNNCTG	1 cut(s)	357
CfoI	GCGC	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	190
Csp6I	GTAC	3 cut(s)	70, 297, 345
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	4 cut(s)	14, 148, 241, 265
CviQI	GTAC	3 cut(s)	70, 297, 345
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
DraIII	CACNNNGTG	1 cut(s)	44
Eam1104I	CTCTTC	2 cut(s)	432, 723
EarI	CTCTTC	2 cut(s)	432, 723
EciI	GGCGGA	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	641
Eco47I	GGWCC	1 cut(s)	190
EcoNI	CCTNNNNNAGG	1 cut(s)	495
EcoRII	CCWGG	3 cut(s)	192, 496, 523
EcoT38I	GRGCYC	1 cut(s)	641
FaeI	CATG	4 cut(s)	17, 151, 244, 268
FaiI	YATR	7 cut(s)	15, 62, 137, 149, 170, 242, 266
FaqI	GGGAC	4 cut(s)	241, 368, 440, 545
FatI	CATG	4 cut(s)	13, 147, 240, 264
Fnu4HI	GCNGC	6 cut(s)	286, 319, 474, 645, 670, 693
FokI	GGATG	3 cut(s)	298, 431, 718
FriOI	GRGCYC	1 cut(s)	641
Fsp4HI	GCNGC	6 cut(s)	286, 319, 474, 645, 670, 693
FspBI	CTAG	6 cut(s)	164, 249, 348, 416, 743, 760
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	6 cut(s)	286, 319, 474, 645, 670, 693
GsuI	CTGGAG	2 cut(s)	480, 546
HaeII	RGCGCY	1 cut(s)	291
HapII	CCGG	5 cut(s)	409, 450, 590, 674, 735
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	4 cut(s)	17, 151, 244, 268
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HinfI	GANTC	5 cut(s)	47, 412, 584, 593, 682
HpaII	CCGG	5 cut(s)	409, 450, 590, 674, 735
HphI	GGTGA	5 cut(s)	49, 56, 294, 525, 579
Hpy166II	GTNNAC	2 cut(s)	72, 482
Hpy188I	TCNGA	4 cut(s)	110, 130, 598, 681
Hpy8I	GTNNAC	2 cut(s)	72, 482
HpyAV	CCTTC	3 cut(s)	115, 400, 723
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	9 cut(s)	13, 26, 231, 264, 321, 441, 482, 644, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	228, 479, 548, 653
HpyF3I	CTNAG	1 cut(s)	582
Hsp92II	CATG	4 cut(s)	17, 151, 244, 268
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	8 cut(s)	88, 227, 499, 506, 527, 547, 652, 666
Lsp1109I	GCAGC	4 cut(s)	297, 305, 656, 679
LweI	GCATC	2 cut(s)	320, 740
MaeI	CTAG	6 cut(s)	164, 249, 348, 416, 743, 760
MaeIII	GTNAC	3 cut(s)	337, 373, 585
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	419, 710
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	2 cut(s)	484, 641
MluCI	AATT	3 cut(s)	53, 99, 322
MlyI	GAGTC	3 cut(s)	406, 593, 676
MmeI	TCCRAC	3 cut(s)	569, 621, 674
MnlI	CCTC	8 cut(s)	41, 377, 431, 441, 468, 565, 583, 712
MseI	TTAA	1 cut(s)	614
MspA1I	CMGCKG	3 cut(s)	476, 581, 692
MspI	CCGG	5 cut(s)	409, 450, 590, 674, 735
MspR9I	CCNGG	5 cut(s)	194, 450, 498, 525, 674
MvaI	CCWGG	3 cut(s)	194, 498, 525
MwoI	GCNNNNNNNGC	4 cut(s)	228, 479, 548, 653
NciI	CCSGG	2 cut(s)	450, 674
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	4 cut(s)	17, 151, 244, 268
NlaIV	GGNNCC	4 cut(s)	19, 93, 502, 668
NmuCI	GTSAC	3 cut(s)	337, 373, 585
PfeI	GAWTC	2 cut(s)	47, 593
PfoI	TCCNGGA	1 cut(s)	523
PkrI	GCNGC	6 cut(s)	287, 320, 475, 646, 671, 694
PleI	GAGTC	3 cut(s)	406, 592, 676
PpsI	GAGTC	3 cut(s)	406, 592, 676
Psp6I	CCWGG	3 cut(s)	192, 496, 523
PspGI	CCWGG	3 cut(s)	192, 496, 523
PspN4I	GGNNCC	4 cut(s)	19, 93, 502, 668
PspPI	GGNCC	1 cut(s)	190
PstI	CTGCAG	1 cut(s)	646
PstNI	CAGNNNCTG	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	17
PvuII	CAGCTG	2 cut(s)	581, 692
RsaI	GTAC	3 cut(s)	71, 298, 346
RsaNI	GTAC	3 cut(s)	70, 297, 345
SaqAI	TTAA	1 cut(s)	614
SatI	GCNGC	6 cut(s)	286, 319, 474, 645, 670, 693
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	190
ScaI	AGTACT	1 cut(s)	346
SchI	GAGTC	3 cut(s)	406, 593, 676
ScrFI	CCNGG	5 cut(s)	194, 450, 498, 525, 674
SduI	GDGCHC	2 cut(s)	484, 641
SfaNI	GCATC	2 cut(s)	320, 740
SfcI	CTRYAG	1 cut(s)	642
SinI	GGWCC	1 cut(s)	190
Sse9I	AATT	3 cut(s)	53, 99, 322
SsiI	CCGC	5 cut(s)	210, 234, 309, 474, 670
SspMI	CTAG	6 cut(s)	164, 249, 348, 416, 743, 760
StyD4I	CCNGG	5 cut(s)	192, 448, 496, 523, 672
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	115
TasI	AATT	3 cut(s)	53, 99, 322
TatI	WGTACW	2 cut(s)	69, 344
TauI	GCSGC	2 cut(s)	476, 672
TfiI	GAWTC	2 cut(s)	47, 593
Tru1I	TTAA	1 cut(s)	614
Tru9I	TTAA	1 cut(s)	614
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	3 cut(s)	337, 373, 585
TseI	GCWGC	4 cut(s)	285, 318, 644, 692
Tsp45I	GTSAC	3 cut(s)	337, 373, 585
TspDTI	ATGAA	1 cut(s)	136
TspGWI	ACGGA	2 cut(s)	104, 325
TspRI	CASTG	1 cut(s)	186
VneI	GTGCAC	1 cut(s)	480
VpaK11BI	GGWCC	1 cut(s)	190
XagI	CCTNNNNNAGG	1 cut(s)	495
XapI	RAATTY	1 cut(s)	99
XspI	CTAG	6 cut(s)	164, 249, 348, 416, 743, 760
ZrmI	AGTACT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.