pycom16g17840

May act early in the ethylene signal transduction pathway, possibly as an ethylene receptor, or as a regulator of the pathway

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
14131621 .. 14133063
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1443 bp
ATGTTAAAGGCATTGGCATCTTTGCTATCAATTTCATTGCTTCTATTCTGTGTTTCCGCGTCTGATAACGGATTCCCGCGGTGCAATTGTGACGATGATGGAAGCTGGTGGAGCATTGAGAGCATACTAGAATGTCAGAGAGTGAGCGATTTCTTGATTGCCGTAGCCTACTTTTCGATCCCCATTGAGCTGCTCTACTTTGTCAGCTGCTCGAATGTACCTTTCAAATGGGTTCTGTTTGAGTTCATTGCCTTCATTGTGCTATGTGGATTGACACATTTACTCAATGGCTGGACTTACGGGCCTCACCCGTTCCAGCTTATGCTGGCGCTCACAGTTTTCAAAATTCTTACTGCTCTGGTCTCATGTGCCACTGCTATAACACTCATCACTCTCATCCCTTTGCTTCTCAAAGTGAAAGTGAGGGAATTCATGTTGAAGAAGAAGACTTGGGATCTCGGGAGAGAGGTTGGGATTATAATGAGACAGAAGGAAGCTGGAATGCATGTTCGGATGCTCACCCAAGAGATTCGCAAGTCACTTGATAGGCATACAATACTGTCGACAACACTTTTTGAGCTATCAGAGACGTTGGGTTTGCAGTACTGTGCAGTTTGGATGCCTAATGAAATTAAAACAGAGATGATTCTCACCCATGAATTGAAAGGGAGGAATTACTCTCATGCATACAACTTTTCTATACCTATAAGTGATCCTGATGTGGAACACATCAAAGGGAGTGATGGGGTGAGCAGCCTTAGGCCTGACTCGGCACTTGTTCATGCCAGTGGTGACTCAGGTGAGCCAGGACCAGTGGCTGCAATTCGGATGCCAATGCTTCGTGTTTCCAATTTCAAAGGAGGAACTCCGGAGGTGATCCAGGCTTGTTATGCAATATTGGTTTTGGTCCTCCCTGGTGGTCAATCTAGATGTTGGAGCAGCCAAGACCTTGAGATAATTAAGGTAGTTGCTGATCAGGTTGCTGTGGCTTTATCCCATGCTGCAGTCCTCGAGGAGTCTCAACTCATGAGAGAGAAGTTGGCTGAGCAAAATCGAGCCTTGCAGCAGGCAAAGATGAAGGCTATGATGGCAAGCCATGCAAGAATTGCATTCCAAAAGGTAATGAGTGATGGGATGAGGAGGCCGATGCACTCAATTTTGGGTTTGCTTTCTTTGATGCAGGACGACACTTTGGATAATGATCAACAAGTTATTGTTGATGCGATGGTGAGGACGAGCAATGTCCTATCAACCTTGATAAATGATGTGATGGACAATTCGACAAAGGAAAGTGGAAGATTTCCATTGGAGATGAGATCTTTTGGGTTGCATGCAATGATAAAGGAAGCAGCTTGCCTTGCCAAATGCTTGTGTGTGTTTAGGGGCTTTGATTTTGGAATTGATGTGGACAAGTCCTTACGTGATCGATGTCATGGGGGATGA

Protein Analysis

481

Amino Acids

53.45

Weight (kDa)

6.5

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ETR1_N PF25487 42 - 139 2e-42 Ethylene receptor 1-like, N-terminal domain
GAF PF01590 182 - 331 1.1e-09 GAF domain
HisKA PF00512 369 - 432 3.2e-10 His Kinase A (phospho-acceptor) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
AbsI CCTCGAGG 1 cut(s) 1010
AccI GTMKAC 1 cut(s) 563
AccII CGCG 2 cut(s) 59, 79
AccIII TCCGGA 1 cut(s) 868
AciI CCGC 3 cut(s) 57, 77, 79
AclWI GGATC 4 cut(s) 172, 462, 707, 871
AcsI RAATTY 2 cut(s) 345, 428
AfaI GTAC 2 cut(s) 219, 605
AgsI TTSAA 5 cut(s) 226, 343, 439, 664, 856
AjnI CCWGG 3 cut(s) 805, 879, 913
AloI GAACNNNNNNTCC 2 cut(s) 492, 524
AluBI AGCT 7 cut(s) 105, 190, 207, 319, 497, 580, 1352
AluI AGCT 7 cut(s) 105, 190, 207, 319, 497, 580, 1352
Alw26I GTCTC 4 cut(s) 367, 478, 581, 1023
AlwI GGATC 4 cut(s) 172, 462, 707, 871
AlwNI CAGNNNCTG 1 cut(s) 818
Ama87I CYCGRG 2 cut(s) 458, 1010
Aor13HI TCCGGA 1 cut(s) 868
AoxI GGCC 3 cut(s) 302, 761, 1142
ApeKI GCWGC 8 cut(s) 190, 207, 753, 818, 939, 1001, 1063, 1349
ApoI RAATTY 2 cut(s) 345, 428
ArsI GACNNNNNNTTYG 2 cut(s) 580, 612
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 3 cut(s) 302, 809, 907
AsuHPI GGTGA 8 cut(s) 299, 511, 643, 760, 803, 812, 886, 1240
AvaI CYCGRG 2 cut(s) 458, 1010
AvaII GGWCC 2 cut(s) 809, 907
AxyI CCTNAGG 1 cut(s) 758
BbsI GAAGAC 1 cut(s) 452
BbvI GCAGC 8 cut(s) 177, 194, 765, 805, 951, 988, 1075, 1361
BccI CCATC 6 cut(s) 92, 737, 1081, 1124, 1219, 1264
BceAI ACGGC 1 cut(s) 146
BciT130I CCWGG 3 cut(s) 807, 881, 915
BclI TGATCA 2 cut(s) 973, 1201
BcoDI GTCTC 4 cut(s) 367, 478, 581, 1023
BfaI CTAG 2 cut(s) 128, 927
BfmI CTRYAG 1 cut(s) 1002
BfoI RGCGCY 1 cut(s) 332
BglII AGATCT 1 cut(s) 1316
BisI GCNGC 8 cut(s) 191, 208, 754, 819, 940, 1002, 1064, 1350
BlpI GCTNAGC 1 cut(s) 1044
BlsI GCNGC 8 cut(s) 192, 209, 755, 820, 941, 1003, 1065, 1351
BmcAI AGTACT 1 cut(s) 605
Bme1390I CCNGG 3 cut(s) 807, 881, 915
Bme18I GGWCC 2 cut(s) 809, 907
BmeT110I CYCGRG 2 cut(s) 458, 1010
BmgT120I GGNCC 3 cut(s) 302, 809, 907
BmrFI CCNGG 3 cut(s) 807, 881, 915
BmsI GCATC 7 cut(s) 26, 504, 609, 819, 1137, 1167, 1210
BpiI GAAGAC 1 cut(s) 452
Bpu1102I GCTNAGC 1 cut(s) 1044
BpuEI CTTGAG 1 cut(s) 971
Bsa29I ATCGAT 1 cut(s) 1426
BsaAI YACGTR 1 cut(s) 1421
BsaBI GATNNNNATC 1 cut(s) 1200
BsaI GGTCTC 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 77, 913
BsaWI WCCGGW 1 cut(s) 868
Bse1I ACTGG 2 cut(s) 786, 812
Bse21I CCTNAGG 1 cut(s) 758
Bse3DI GCAATG 4 cut(s) 35, 246, 1246, 1341
Bse8I GATNNNNATC 1 cut(s) 1200
BseAI TCCGGA 1 cut(s) 868
BseBI CCWGG 3 cut(s) 807, 881, 915
BseCI ATCGAT 1 cut(s) 1426
BseDI CCNNGG 2 cut(s) 77, 913
BseGI GGATG 5 cut(s) 396, 519, 624, 834, 1140
BseJI GATNNNNATC 1 cut(s) 1200
BseMI GCAATG 4 cut(s) 35, 246, 1246, 1341
BseMII CTCAG 2 cut(s) 810, 1035
BseNI ACTGG 2 cut(s) 786, 812
BseRI GAGGAG 2 cut(s) 1028, 1153
BseXI GCAGC 8 cut(s) 177, 194, 765, 805, 951, 988, 1075, 1361
BsgI GTGCAG 1 cut(s) 630
Bsh1236I CGCG 2 cut(s) 59, 79
BshFI GGCC 3 cut(s) 304, 763, 1144
BshVI ATCGAT 1 cut(s) 1426
BsiHKCI CYCGRG 2 cut(s) 458, 1010
BsiSI CCGG 1 cut(s) 869
BsmAI GTCTC 4 cut(s) 367, 478, 581, 1023
BsmBI CGTCTC 1 cut(s) 581
BsmI GAATGC 2 cut(s) 507, 1109
BsnI GGCC 3 cut(s) 304, 763, 1144
Bso31I GGTCTC 1 cut(s) 367
BsoBI CYCGRG 2 cut(s) 458, 1010
Bsp13I TCCGGA 1 cut(s) 868
Bsp143I GATC 8 cut(s) 177, 454, 712, 876, 973, 1201, 1316, 1423
Bsp1720I GCTNAGC 1 cut(s) 1044
BspACI CCGC 3 cut(s) 57, 77, 79
BspANI GGCC 3 cut(s) 304, 763, 1144
BspCNI CTCAG 2 cut(s) 809, 1036
BspDI ATCGAT 1 cut(s) 1426
BspEI TCCGGA 1 cut(s) 868
BspFNI CGCG 2 cut(s) 59, 79
BspHI TCATGA 1 cut(s) 1026
BspMAI CTGCAG 1 cut(s) 1006
BspPI GGATC 4 cut(s) 172, 462, 707, 871
BspTNI GGTCTC 1 cut(s) 367
BsrDI GCAATG 4 cut(s) 35, 246, 1246, 1341
BsrI ACTGG 2 cut(s) 786, 812
BssECI CCNNGG 2 cut(s) 77, 913
BssMI GATC 8 cut(s) 177, 454, 712, 876, 973, 1201, 1316, 1423
Bst2UI CCWGG 3 cut(s) 807, 881, 915
Bst4CI ACNGT 3 cut(s) 337, 561, 608
BstAPI GCANNNNNTGC 2 cut(s) 1097, 1106
BstBAI YACGTR 1 cut(s) 1421
BstC8I GCNNGC 5 cut(s) 327, 1068, 1093, 1332, 1354
BstDEI CTNAG 3 cut(s) 758, 796, 1044
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 5 cut(s) 396, 519, 624, 834, 1140
BstFNI CGCG 2 cut(s) 59, 79
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 8 cut(s) 180, 457, 715, 879, 976, 1204, 1319, 1426
BstMAI GTCTC 4 cut(s) 367, 478, 581, 1023
BstMBI GATC 8 cut(s) 177, 454, 712, 876, 973, 1201, 1316, 1423
BstMWI GCNNNNNNNGC 7 cut(s) 111, 120, 890, 1088, 1097, 1106, 1358
BstNI CCWGG 3 cut(s) 807, 881, 915
BstNSI RCATGY 2 cut(s) 509, 1334
BstSCI CCNGG 3 cut(s) 805, 879, 913
BstSFI CTRYAG 1 cut(s) 1002
BstUI CGCG 2 cut(s) 59, 79
BstV1I GCAGC 8 cut(s) 177, 194, 765, 805, 951, 988, 1075, 1361
BstV2I GAAGAC 1 cut(s) 452
BstX2I RGATCY 2 cut(s) 454, 1316
BstYI RGATCY 2 cut(s) 454, 1316
Bsu15I ATCGAT 1 cut(s) 1426
Bsu36I CCTNAGG 1 cut(s) 758
BsuRI GGCC 3 cut(s) 304, 763, 1144
BsuTUI ATCGAT 1 cut(s) 1426
BtgI CCRYGG 1 cut(s) 77
BtgZI GCGATG 1 cut(s) 1238
BtsCI GGATG 5 cut(s) 396, 519, 624, 834, 1140
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 3 cut(s) 372, 793, 819
Cac8I GCNNGC 5 cut(s) 327, 1068, 1093, 1332, 1354
CaiI CAGNNNCTG 1 cut(s) 818
CciI TCATGA 1 cut(s) 1026
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 3 cut(s) 302, 809, 907
Cfr42I CCGCGG 1 cut(s) 80
ClaI ATCGAT 1 cut(s) 1426
CseI GACGC 1 cut(s) 48
Csp6I GTAC 2 cut(s) 218, 604
CviQI GTAC 2 cut(s) 218, 604
DdeI CTNAG 3 cut(s) 758, 796, 1044
DpnI GATC 8 cut(s) 179, 456, 714, 878, 975, 1203, 1318, 1425
DpnII GATC 8 cut(s) 177, 454, 712, 876, 973, 1201, 1316, 1423
Eco147I AGGCCT 1 cut(s) 763
Eco31I GGTCTC 1 cut(s) 367
Eco47I GGWCC 2 cut(s) 809, 907
Eco81I CCTNAGG 1 cut(s) 758
Eco88I CYCGRG 2 cut(s) 458, 1010
EcoRI GAATTC 1 cut(s) 428
EcoRII CCWGG 3 cut(s) 805, 879, 913
EcoT22I ATGCAT 2 cut(s) 507, 688
Esp3I CGTCTC 1 cut(s) 581
FauI CCCGC 1 cut(s) 84
FbaI TGATCA 2 cut(s) 973, 1201
FblI GTMKAC 1 cut(s) 563
Fnu4HI GCNGC 8 cut(s) 191, 208, 754, 819, 940, 1002, 1064, 1350
FokI GGATG 5 cut(s) 383, 526, 631, 841, 1147
Fsp4HI GCNGC 8 cut(s) 191, 208, 754, 819, 940, 1002, 1064, 1350
FspBI CTAG 2 cut(s) 128, 927
GlaI GCGC 1 cut(s) 330
GluI GCNGC 8 cut(s) 191, 208, 754, 819, 940, 1002, 1064, 1350
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 3 cut(s) 304, 763, 1144
HapII CCGG 1 cut(s) 869
HgaI GACGC 1 cut(s) 48
HhaI GCGC 1 cut(s) 331
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HinfI GANTC 6 cut(s) 72, 529, 646, 767, 794, 1016
HpaII CCGG 1 cut(s) 869
HphI GGTGA 8 cut(s) 299, 511, 643, 760, 803, 812, 886, 1240
Hpy166II GTNNAC 2 cut(s) 564, 1408
Hpy188I TCNGA 5 cut(s) 64, 138, 513, 586, 828
Hpy188III TCNNGA 6 cut(s) 154, 460, 716, 869, 927, 1027
Hpy8I GTNNAC 2 cut(s) 564, 1408
HpyAV CCTTC 3 cut(s) 262, 484, 1072
HpyCH4III ACNGT 3 cut(s) 337, 561, 608
HpyCH4IV ACGT 2 cut(s) 590, 1420
HpyF10VI GCNNNNNNNGC 7 cut(s) 111, 120, 890, 1088, 1097, 1106, 1358
HpyF3I CTNAG 3 cut(s) 758, 796, 1044
HpySE526I ACGT 2 cut(s) 590, 1420
HspAI GCGC 1 cut(s) 329
Kpn2I TCCGGA 1 cut(s) 868
Ksp22I TGATCA 2 cut(s) 973, 1201
KspI CCGCGG 1 cut(s) 80
Kzo9I GATC 8 cut(s) 177, 454, 712, 876, 973, 1201, 1316, 1423
LmnI GCTCC 2 cut(s) 111, 936
Lsp1109I GCAGC 8 cut(s) 177, 194, 765, 805, 951, 988, 1075, 1361
LweI GCATC 7 cut(s) 26, 504, 609, 819, 1137, 1167, 1210
MaeI CTAG 2 cut(s) 128, 927
MaeII ACGT 2 cut(s) 590, 1420
MaeIII GTNAC 3 cut(s) 89, 537, 791
MalI GATC 8 cut(s) 179, 456, 714, 878, 975, 1203, 1318, 1425
MboI GATC 8 cut(s) 177, 454, 712, 876, 973, 1201, 1316, 1423
MboII GAAGA 4 cut(s) 451, 454, 457, 1308
MfeI CAATTG 1 cut(s) 85
MflI RGATCY 2 cut(s) 454, 1316
MlyI GAGTC 3 cut(s) 761, 788, 1025
MmeI TCCRAC 1 cut(s) 914
Mph1103I ATGCAT 2 cut(s) 507, 688
MroI TCCGGA 1 cut(s) 868
MseI TTAA 3 cut(s) 5, 633, 960
MslI CAYNNNNRTG 1 cut(s) 786
MspA1I CMGCKG 2 cut(s) 79, 207
MspI CCGG 1 cut(s) 869
MspR9I CCNGG 3 cut(s) 807, 881, 915
MunI CAATTG 1 cut(s) 85
Mva1269I GAATGC 2 cut(s) 507, 1109
MvaI CCWGG 3 cut(s) 807, 881, 915
MvnI CGCG 2 cut(s) 59, 79
MwoI GCNNNNNNNGC 7 cut(s) 111, 120, 890, 1088, 1097, 1106, 1358
NdeII GATC 8 cut(s) 177, 454, 712, 876, 973, 1201, 1316, 1423
NmeAIII GCCGAG 1 cut(s) 749
NmuCI GTSAC 3 cut(s) 89, 537, 791
NsiI ATGCAT 2 cut(s) 507, 688
NspI RCATGY 2 cut(s) 509, 1334
PaeI GCATGC 1 cut(s) 1334
PaeR7I CTCGAG 1 cut(s) 1010
PagI TCATGA 1 cut(s) 1026
PceI AGGCCT 1 cut(s) 763
PctI GAATGC 2 cut(s) 507, 1109
PfeI GAWTC 3 cut(s) 72, 529, 646
PkrI GCNGC 8 cut(s) 192, 209, 755, 820, 941, 1003, 1065, 1351
PleI GAGTC 3 cut(s) 761, 788, 1024
PpsI GAGTC 3 cut(s) 761, 788, 1024
Ppu21I YACGTR 1 cut(s) 1421
PsiI TTATAA 1 cut(s) 479
Psp6I CCWGG 3 cut(s) 805, 879, 913
PspGI CCWGG 3 cut(s) 805, 879, 913
PspPI GGNCC 3 cut(s) 302, 809, 907
PspXI VCTCGAGB 1 cut(s) 1010
PstI CTGCAG 1 cut(s) 1006
PstNI CAGNNNCTG 1 cut(s) 818
PsuI RGATCY 2 cut(s) 454, 1316
PvuII CAGCTG 1 cut(s) 207
RsaI GTAC 2 cut(s) 219, 605
RsaNI GTAC 2 cut(s) 218, 604
RseI CAYNNNNRTG 1 cut(s) 786
SacII CCGCGG 1 cut(s) 80
SalI GTCGAC 1 cut(s) 562
SaqAI TTAA 3 cut(s) 5, 633, 960
SatI GCNGC 8 cut(s) 191, 208, 754, 819, 940, 1002, 1064, 1350
Sau3AI GATC 8 cut(s) 177, 454, 712, 876, 973, 1201, 1316, 1423
Sau96I GGNCC 3 cut(s) 302, 809, 907
ScaI AGTACT 1 cut(s) 605
SchI GAGTC 3 cut(s) 761, 788, 1025
ScrFI CCNGG 3 cut(s) 807, 881, 915
SfaNI GCATC 7 cut(s) 26, 504, 609, 819, 1137, 1167, 1210
SfcI CTRYAG 1 cut(s) 1002
Sfr274I CTCGAG 1 cut(s) 1010
Sfr303I CCGCGG 1 cut(s) 80
SgrBI CCGCGG 1 cut(s) 80
SinI GGWCC 2 cut(s) 809, 907
SlaI CTCGAG 1 cut(s) 1010
SmiMI CAYNNNNRTG 1 cut(s) 786
SmlI CTYRAG 2 cut(s) 950, 1010
SmoI CTYRAG 2 cut(s) 950, 1010
SphI GCATGC 1 cut(s) 1334
SseBI AGGCCT 1 cut(s) 763
SsiI CCGC 3 cut(s) 57, 77, 79
SspI AATATT 1 cut(s) 897
SspMI CTAG 2 cut(s) 128, 927
StuI AGGCCT 1 cut(s) 763
StyD4I CCNGG 3 cut(s) 805, 879, 913
TaaI ACNGT 3 cut(s) 337, 561, 608
TaiI ACGT 2 cut(s) 593, 1423
TaqI TCGA 7 cut(s) 176, 212, 563, 1011, 1054, 1280, 1426
TatI WGTACW 1 cut(s) 603
TfiI GAWTC 3 cut(s) 72, 529, 646
Tru1I TTAA 3 cut(s) 5, 633, 960
Tru9I TTAA 3 cut(s) 5, 633, 960
TscAI CASTG 3 cut(s) 379, 793, 819
TseFI GTSAC 3 cut(s) 89, 537, 791
TseI GCWGC 8 cut(s) 190, 207, 753, 818, 939, 1001, 1063, 1349
Tsp45I GTSAC 3 cut(s) 89, 537, 791
TspDTI ATGAA 8 cut(s) 24, 235, 244, 421, 642, 672, 770, 1091
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 3 cut(s) 379, 793, 819
VpaK11BI GGWCC 2 cut(s) 809, 907
XapI RAATTY 2 cut(s) 345, 428
XbaI TCTAGA 1 cut(s) 926
XceI RCATGY 2 cut(s) 509, 1334
XhoI CTCGAG 1 cut(s) 1010
XmiI GTMKAC 1 cut(s) 563
XspI CTAG 2 cut(s) 128, 927
ZrmI AGTACT 1 cut(s) 605
Zsp2I ATGCAT 2 cut(s) 507, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.