Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010373

Physical Location & Seq

Genomic Coordinates Reverse (-)

14487253 .. 14489237

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGGGAATGGATAGATTATCTTGATTACATCGACGAAACCCAACCCACCGATTTCCTCTGGCCCAACCGCACTCCTTTCGGCGATTTCGAATTCTCCGCCCTCGATGTTCCTGCTGCCGCCGCTTCACAGTTACAGGAAAAAGAGTGCCTCCGCAAGAGGGGACGACCGGATTCGTGCTCTGGATCAGGGGCAAAAGCTTGCCGTGAGAAATTGAGGAGGGAGAGATTGAATGACAGGTTTGTGGAGTTGAACGGTGTTTTGGAGCCCAGGAGGCCGCCGAAGACGGACAAGGCTGCTATACTTGATGATGCCATAAGGGTTTTGAACCAGCTGAGAGCTGAAGCTCAGGAGCTCACAGAAACAAATCAAAAGTTACTTGAAGAAGTTAAAAGTTTAAAGGCAGAGAAGAACGAATTTCGTGAAGAGAAACTTGTACTGAAAGCAGATAAAGAACGGCTGGAGCAGCAGTTGAAAGGTATGGCAATTTCACCTTCTGGGTTTGTTCCAACCCACCCAGCGGTACCAGCTGCATATCATCCTGGGGCAAACAAGATGGCAGTCTATCCTAGCTATAGTCTGGTCCCGATGTGGCACTATTTGCCTCCATCGGCCCGTGATACATCTTGTGACCATGAACTTAGGCCCCCCGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031326 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

220

Amino Acids

24.8

Weight (kDa)

5.91

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	65 - 113	4.8e-09	Helix-loop-helix DNA-binding domain
bHLH_IRO3	PF23177	66 - 131	8.6e-08	Iron-related transcription factor 3 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23210 AT3G23210 AT4G14410 AT4G14410 AT4G14410
fragaria_vesca	FvH4_4g03420
malus_domestica	MD13G1212400.v1.1 MD16G1216000.v1.1
prunus_persica	Prupe.1G037400_v2.0.a1
pyrus_communis	pycom13g18420 pycom16g18070
rosa_chinensis	RchiOBHm_Chr4g0392401
rosa_laevigata	RLG00000009814
rosa_multiflora	Rmu_sc0001800.1_g000017
rosa_roxburghii	Rroxscaffold_5G00337580
rosa_rugosa	Rorug03G0338600
rosa_samantha	Rh4AG042400 Rh4BG037300 Rh4CG045200 Rh4DG039700
rosa_wichuraiana	Rw4G003310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	523
AccB1I	GGYRCC	1 cut(s)	523
AciI	CCGC	8 cut(s)	70, 99, 120, 123, 154, 278, 521, 651
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	92, 416
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	2 cut(s)	438, 525
AfiI	CCNNNNNNNGG	2 cut(s)	160, 520
AgsI	TTSAA	5 cut(s)	232, 253, 328, 383, 475
AjnI	CCWGG	2 cut(s)	269, 541
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	7 cut(s)	200, 334, 341, 347, 355, 530, 573
AluI	AGCT	7 cut(s)	200, 334, 341, 347, 355, 530, 573
Alw21I	GWGCWC	2 cut(s)	182, 357
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	4 cut(s)	62, 275, 612, 644
ApeKI	GCWGC	5 cut(s)	116, 296, 466, 530, 653
ApoI	RAATTY	2 cut(s)	92, 416
Asp718I	GGTACC	1 cut(s)	523
AspS9I	GGNCC	4 cut(s)	63, 583, 613, 645
AsuHPI	GGTGA	1 cut(s)	483
AsuII	TTCGAA	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	523
BanII	GRGCYC	2 cut(s)	270, 357
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	2 cut(s)	182, 357
BbvI	GCAGC	5 cut(s)	103, 283, 478, 517, 640
BccI	CCATC	2 cut(s)	550, 616
BceAI	ACGGC	2 cut(s)	189, 473
BcgI	CGANNNNNNTGC	4 cut(s)	61, 95, 95, 129
BciT130I	CCWGG	2 cut(s)	271, 543
BfaI	CTAG	1 cut(s)	570
BfmI	CTRYAG	1 cut(s)	574
BglI	GCCNNNNNGGC	1 cut(s)	274
BisI	GCNGC	8 cut(s)	117, 120, 123, 278, 297, 467, 531, 654
BlsI	GCNGC	8 cut(s)	118, 121, 124, 279, 298, 468, 532, 655
Bme1390I	CCNGG	2 cut(s)	271, 543
Bme18I	GGWCC	1 cut(s)	583
BmgT120I	GGNCC	4 cut(s)	63, 583, 613, 645
BmiI	GGNNCC	4 cut(s)	267, 525, 585, 647
BmrFI	CCNGG	2 cut(s)	271, 543
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	348
Bpu14I	TTCGAA	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	269, 542
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 520
BseBI	CCWGG	2 cut(s)	271, 543
BseDI	CCNNGG	2 cut(s)	269, 542
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	2 cut(s)	160, 520
BseMII	CTCAG	2 cut(s)	326, 362
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	5 cut(s)	103, 283, 478, 517, 640
BseYI	CCCAGC	1 cut(s)	517
Bsh1285I	CGRYCG	1 cut(s)	170
BshFI	GGCC	4 cut(s)	64, 277, 614, 646
BshNI	GGYRCC	1 cut(s)	523
BsiEI	CGRYCG	1 cut(s)	170
BsiHKAI	GWGCWC	2 cut(s)	182, 357
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	2 cut(s)	177, 569
BslI	CCNNNNNNNGG	2 cut(s)	160, 520
BsmFI	GGGAC	2 cut(s)	177, 569
BsnI	GGCC	4 cut(s)	64, 277, 614, 646
Bsp119I	TTCGAA	1 cut(s)	90
Bsp1286I	GDGCHC	3 cut(s)	182, 270, 357
Bsp143I	GATC	1 cut(s)	185
BspACI	CCGC	8 cut(s)	70, 99, 120, 123, 154, 278, 521, 651
BspANI	GGCC	4 cut(s)	64, 277, 614, 646
BspCNI	CTCAG	2 cut(s)	327, 361
BspLI	GGNNCC	4 cut(s)	267, 525, 585, 647
BspPI	GGATC	1 cut(s)	193
BspT104I	TTCGAA	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	523
BssECI	CCNNGG	2 cut(s)	269, 542
BssMI	GATC	1 cut(s)	185
Bst2UI	CCWGG	2 cut(s)	271, 543
Bst4CI	ACNGT	2 cut(s)	132, 257
Bst6I	CTCTTC	1 cut(s)	420
BstAPI	GCANNNNNTGC	1 cut(s)	601
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	4 cut(s)	335, 348, 641, 657
BstF5I	GGATG	1 cut(s)	538
BstKTI	GATC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	185
BstMCI	CGRYCG	1 cut(s)	170
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 274, 466, 527, 601
BstNI	CCWGG	2 cut(s)	271, 543
BstSCI	CCNGG	2 cut(s)	269, 541
BstSFI	CTRYAG	1 cut(s)	574
BstV1I	GCAGC	5 cut(s)	103, 283, 478, 517, 640
BstV2I	GAAGAC	1 cut(s)	290
BsuRI	GGCC	4 cut(s)	64, 277, 614, 646
BtsCI	GGATG	1 cut(s)	538
Cac8I	GCNNGC	1 cut(s)	202
Cfr13I	GGNCC	4 cut(s)	63, 583, 613, 645
Csp6I	GTAC	2 cut(s)	437, 524
CviAII	CATG	1 cut(s)	635
CviQI	GTAC	2 cut(s)	437, 524
DdeI	CTNAG	4 cut(s)	335, 348, 641, 657
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
DraI	TTTAAA	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	355
Eco24I	GRGCYC	2 cut(s)	270, 357
Eco47I	GGWCC	1 cut(s)	583
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	363
EcoICRI	GAGCTC	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	645
EcoRI	GAATTC	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	269, 541
EcoT38I	GRGCYC	2 cut(s)	270, 357
FaeI	CATG	1 cut(s)	638
FaiI	YATR	6 cut(s)	302, 317, 482, 535, 576, 636
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	2 cut(s)	177, 569
FatI	CATG	1 cut(s)	634
FauI	CCCGC	1 cut(s)	658
Fnu4HI	GCNGC	8 cut(s)	117, 120, 123, 278, 297, 467, 531, 654
FokI	GGATG	1 cut(s)	525
FriOI	GRGCYC	2 cut(s)	270, 357
Fsp4HI	GCNGC	8 cut(s)	117, 120, 123, 278, 297, 467, 531, 654
FspBI	CTAG	1 cut(s)	570
GluI	GCNGC	8 cut(s)	117, 120, 123, 278, 297, 467, 531, 654
GsaI	CCCAGC	1 cut(s)	521
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	4 cut(s)	64, 277, 614, 646
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	1 cut(s)	638
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	483
Hpy188III	TCNNGA	5 cut(s)	23, 183, 350, 422, 586
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	504
HpyCH4III	ACNGT	2 cut(s)	132, 257
HpyCH4V	TGCA	1 cut(s)	533
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 274, 466, 527, 601
HpyF3I	CTNAG	4 cut(s)	335, 348, 641, 657
Hsp92II	CATG	1 cut(s)	638
KpnI	GGTACC	1 cut(s)	527
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	3 cut(s)	265, 352, 463
Lsp1109I	GCAGC	5 cut(s)	103, 283, 478, 517, 640
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	570
MaeIII	GTNAC	3 cut(s)	132, 375, 629
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	4 cut(s)	295, 395, 421, 437
MhlI	GDGCHC	3 cut(s)	182, 270, 357
MluCI	AATT	4 cut(s)	92, 212, 416, 486
MmeI	TCCRAC	1 cut(s)	533
MnlI	CCTC	8 cut(s)	68, 113, 153, 161, 210, 213, 267, 615
MseI	TTAA	2 cut(s)	390, 398
MspA1I	CMGCKG	4 cut(s)	334, 521, 530, 653
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	271, 543
MvaI	CCWGG	2 cut(s)	271, 543
MwoI	GCNNNNNNNGC	5 cut(s)	122, 274, 466, 527, 601
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	1 cut(s)	638
NlaIV	GGNNCC	4 cut(s)	267, 525, 585, 647
NmuCI	GTSAC	1 cut(s)	629
NspV	TTCGAA	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	8 cut(s)	118, 121, 124, 279, 298, 468, 532, 655
Psp124BI	GAGCTC	1 cut(s)	357
Psp6I	CCWGG	2 cut(s)	269, 541
PspFI	CCCAGC	1 cut(s)	517
PspGI	CCWGG	2 cut(s)	269, 541
PspN4I	GGNNCC	4 cut(s)	267, 525, 585, 647
PspPI	GGNCC	4 cut(s)	63, 583, 613, 645
PvuII	CAGCTG	2 cut(s)	334, 530
RsaI	GTAC	2 cut(s)	438, 525
RsaNI	GTAC	2 cut(s)	437, 524
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	390, 398
SatI	GCNGC	8 cut(s)	117, 120, 123, 278, 297, 467, 531, 654
Sau3AI	GATC	1 cut(s)	185
Sau96I	GGNCC	4 cut(s)	63, 583, 613, 645
ScrFI	CCNGG	2 cut(s)	271, 543
SduI	GDGCHC	3 cut(s)	182, 270, 357
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	574
SfuI	TTCGAA	1 cut(s)	90
SinI	GGWCC	1 cut(s)	583
Sse9I	AATT	4 cut(s)	92, 212, 416, 486
SsiI	CCGC	8 cut(s)	70, 99, 120, 123, 154, 278, 521, 651
SspMI	CTAG	1 cut(s)	570
SstI	GAGCTC	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	269, 541
TaaI	ACNGT	2 cut(s)	132, 257
TaqI	TCGA	3 cut(s)	33, 90, 105
TasI	AATT	4 cut(s)	92, 212, 416, 486
TatI	WGTACW	1 cut(s)	436
TauI	GCSGC	3 cut(s)	122, 125, 280
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	390, 398
Tru9I	TTAA	2 cut(s)	390, 398
TseFI	GTSAC	1 cut(s)	629
TseI	GCWGC	5 cut(s)	116, 296, 466, 530, 653
Tsp45I	GTSAC	1 cut(s)	629
TspDTI	ATGAA	1 cut(s)	651
TspGWI	ACGGA	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	2 cut(s)	92, 416
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.