Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0012788

Physical Location & Seq

Genomic Coordinates Forward (+)

15253898 .. 15254806

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCAAATTGGATTTCCCACAGATGTTAAGCATGTTGCGCACATTGGATGGGATGGTCCGTCTACAAAAAGTACTCCGAGCTGGATGAATGATTTCAAAGGTGCTTCTCCGGAAGTCCCATCCACAGGGAAATTGACTGTTGAAGAACTGGCTTCCCAAGATATGCATAAAACAAGCCTTGCTGCCCAAGAATTGGTGCAGCAAAATGACATTCCAAGGTCTAGGCGCCATTCCACAGGTGAATCTGAAGGTTCCCAAACCAAGAAGAGCTCTGATGGGTCAAAGAAGCATTCTAGGCGCCATCGCTCCAAGGAAGGAGCAATGGATACTCCATCTCATGAGTCTAAAGAAGGTAGTAGCCGTCATTCAAGAAAAAGCCGGAATTCTAACAATCTTGGATCAGAATCACCCGTAGAAGACCGTCCTGGAATACCAAAGCAAAGGAGGAAAAAGGGGTCATCTGAAGGCGGGTCATCGAGGTCATCAAGGAGGGCAAACAGATCAAAAGGCCAGAATTCTATGACTGATATTTCATTGGAAGGTTCGGAGCATGGATCATGCAAGAGTACCGAGAGTCCAATGCACCCCGTTTTGGCAGAAGCGAAAAGTTCTGAGGGGCTTTCTGGCGGGAATAACGTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010005 GO:0010215 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0030863 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042546 GO:0043062 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055028 GO:0060560 GO:0070726 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

215

Amino Acids

23.1

Weight (kDa)

9.71

Isoelectric Point (pI)

79.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBD	PF00786	2 - 35	3.8e-06	P21-Rho-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04450 AT2G33460
fragaria_vesca	FvH4_4g03980
malus_domestica	MD16G1221500.v1.1
prunus_persica	Prupe.1G041800_v2.0.a1
pyrus_communis	pycom13g18950 pycom16g18580
rosa_chinensis	RchiOBHm_Chr4g0394211
rosa_laevigata	RLG00000009713
rosa_multiflora	Rmu_ssc0000473.1_g000029
rosa_roxburghii	Rroxscaffold_5G00339270
rosa_rugosa	Rorug03G0368400.1 Rorug03G0368500.1
rosa_samantha	Rh4AG050800 Rh4BG047700 Rh4CG054400 Rh4DG047400
rosa_wichuraiana	Rw4G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	39
AccB1I	GGYRCC	2 cut(s)	225, 297
AccB7I	CCANNNNNTGG	1 cut(s)	193
AccI	GTMKAC	1 cut(s)	62
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	2 cut(s)	468, 627
AclWI	GGATC	2 cut(s)	406, 562
AcsI	RAATTY	2 cut(s)	382, 514
AcuI	CTGAAG	2 cut(s)	267, 483
AcyI	GRCGYC	2 cut(s)	226, 298
AfaI	GTAC	2 cut(s)	73, 568
AfiI	CCNNNNNNNGG	3 cut(s)	125, 193, 592
AgsI	TTSAA	3 cut(s)	97, 143, 369
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	2 cut(s)	81, 270
AluI	AGCT	2 cut(s)	81, 270
Alw21I	GWGCWC	1 cut(s)	272
AlwI	GGATC	2 cut(s)	406, 562
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	1 cut(s)	508
ApeKI	GCWGC	2 cut(s)	182, 199
ApoI	RAATTY	2 cut(s)	382, 514
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	3 cut(s)	40, 228, 300
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	251, 399
AvaII	GGWCC	1 cut(s)	56
BanI	GGYRCC	2 cut(s)	225, 297
BanII	GRGCYC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	169, 211
BccI	CCATC	6 cut(s)	42, 47, 127, 269, 309, 340
BceAI	ACGGC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	426
BciVI	GTATCC	1 cut(s)	319
BfaI	CTAG	2 cut(s)	222, 294
BfoI	RGCGCY	2 cut(s)	229, 301
BfuI	GTATCC	1 cut(s)	319
BisI	GCNGC	2 cut(s)	183, 200
BlsI	GCNGC	2 cut(s)	184, 201
BmcAI	AGTACT	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	3 cut(s)	227, 253, 299
BmrFI	CCNGG	1 cut(s)	426
BpiI	GAAGAC	1 cut(s)	423
BsaBI	GATNNNNATC	1 cut(s)	403
BsaHI	GRCGYC	2 cut(s)	226, 298
BsaJI	CCNNGG	2 cut(s)	215, 309
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 193, 592
Bse1I	ACTGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	327
Bse8I	GATNNNNATC	1 cut(s)	403
BseAI	TCCGGA	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	2 cut(s)	215, 309
BseGI	GGATG	4 cut(s)	53, 58, 90, 119
BseJI	GATNNNNATC	1 cut(s)	403
BseLI	CCNNNNNNNGG	3 cut(s)	125, 193, 592
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	169, 211
BsgI	GTGCAG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	510
BshNI	GGYRCC	2 cut(s)	225, 297
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	110, 379
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	3 cut(s)	125, 193, 592
BsmFI	GGGAC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp13I	TCCGGA	1 cut(s)	109
Bsp143I	GATC	3 cut(s)	398, 500, 554
BspACI	CCGC	2 cut(s)	468, 627
BspANI	GGCC	1 cut(s)	510
BspCNI	CTCAG	1 cut(s)	604
BspEI	TCCGGA	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	227, 253, 299
BspPI	GGATC	2 cut(s)	406, 562
BspQI	GCTCTTC	1 cut(s)	260
BspT107I	GGYRCC	2 cut(s)	225, 297
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	215, 309
BssMI	GATC	3 cut(s)	398, 500, 554
BssNI	GRCGYC	2 cut(s)	226, 298
BssT1I	CCWWGG	2 cut(s)	215, 309
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	2 cut(s)	139, 422
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	2 cut(s)	226, 298
BstDEI	CTNAG	1 cut(s)	612
BstF5I	GGATG	4 cut(s)	53, 58, 90, 119
BstH2I	RGCGCY	2 cut(s)	229, 301
BstHHI	GCGC	3 cut(s)	40, 228, 300
BstKTI	GATC	3 cut(s)	401, 503, 557
BstMBI	GATC	3 cut(s)	398, 500, 554
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 295
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	424
BstV1I	GCAGC	2 cut(s)	169, 211
BstV2I	GAAGAC	1 cut(s)	423
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	510
BtgZI	GCGATG	1 cut(s)	287
BtsCI	GGATG	4 cut(s)	53, 58, 90, 119
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	3 cut(s)	40, 228, 300
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	72, 567
CviAII	CATG	4 cut(s)	32, 338, 551, 558
CviJI	RGCY	8 cut(s)	81, 152, 177, 270, 360, 378, 510, 619
CviKI_1	RGCY	8 cut(s)	81, 152, 177, 270, 360, 378, 510, 619
CviQI	GTAC	2 cut(s)	72, 567
DdeI	CTNAG	1 cut(s)	612
DinI	GGCGCC	2 cut(s)	227, 299
DpnI	GATC	3 cut(s)	400, 502, 556
DpnII	GATC	3 cut(s)	398, 500, 554
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	270
Eco130I	CCWWGG	2 cut(s)	215, 309
Eco24I	GRGCYC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	56
Eco53kI	GAGCTC	1 cut(s)	270
Eco57I	CTGAAG	2 cut(s)	267, 483
EcoICRI	GAGCTC	1 cut(s)	270
EcoRI	GAATTC	2 cut(s)	382, 514
EcoRII	CCWGG	1 cut(s)	424
EcoT14I	CCWWGG	2 cut(s)	215, 309
EcoT22I	ATGCAT	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	272
EgeI	GGCGCC	2 cut(s)	227, 299
EheI	GGCGCC	2 cut(s)	227, 299
ErhI	CCWWGG	2 cut(s)	215, 309
FaeI	CATG	4 cut(s)	35, 341, 554, 561
FaiI	YATR	7 cut(s)	33, 164, 168, 339, 521, 552, 559
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	4 cut(s)	31, 337, 550, 557
FauI	CCCGC	2 cut(s)	461, 620
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	183, 200
FokI	GGATG	4 cut(s)	60, 65, 97, 106
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	183, 200
FspBI	CTAG	2 cut(s)	222, 294
FspI	TGCGCA	1 cut(s)	39
GlaI	GCGC	3 cut(s)	39, 227, 299
GluI	GCNGC	2 cut(s)	183, 200
HaeII	RGCGCY	2 cut(s)	229, 301
HaeIII	GGCC	1 cut(s)	510
HapII	CCGG	2 cut(s)	110, 379
HhaI	GCGC	3 cut(s)	40, 228, 300
Hin1I	GRCGYC	2 cut(s)	226, 298
Hin1II	CATG	4 cut(s)	35, 341, 554, 561
Hin6I	GCGC	3 cut(s)	38, 226, 298
HinP1I	GCGC	3 cut(s)	38, 226, 298
HinfI	GANTC	4 cut(s)	242, 341, 404, 574
HpaII	CCGG	2 cut(s)	110, 379
HphI	GGTGA	2 cut(s)	251, 399
Hpy166II	GTNNAC	2 cut(s)	63, 640
Hpy188I	TCNGA	7 cut(s)	78, 247, 274, 403, 463, 547, 613
Hpy188III	TCNNGA	3 cut(s)	110, 338, 369
Hpy8I	GTNNAC	2 cut(s)	63, 640
HpyAV	CCTTC	5 cut(s)	242, 308, 344, 458, 533
HpyCH4III	ACNGT	2 cut(s)	139, 422
HpyCH4IV	ACGT	1 cut(s)	636
HpyCH4V	TGCA	5 cut(s)	4, 166, 199, 561, 583
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 295
HpyF3I	CTNAG	1 cut(s)	612
HpySE526I	ACGT	1 cut(s)	636
Hsp92I	GRCGYC	2 cut(s)	226, 298
Hsp92II	CATG	4 cut(s)	35, 341, 554, 561
HspAI	GCGC	3 cut(s)	38, 226, 298
KasI	GGCGCC	2 cut(s)	225, 297
Kpn2I	TCCGGA	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	398, 500, 554
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	3 cut(s)	311, 317, 547
Lsp1109I	GCAGC	2 cut(s)	169, 211
MaeI	CTAG	2 cut(s)	222, 294
MaeII	ACGT	1 cut(s)	636
MalI	GATC	3 cut(s)	400, 502, 556
MboI	GATC	3 cut(s)	398, 500, 554
MboII	GAAGA	3 cut(s)	155, 277, 428
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	5 cut(s)	6, 131, 191, 382, 514
Mly113I	GGCGCC	2 cut(s)	226, 298
MlyI	GAGTC	2 cut(s)	350, 583
MnlI	CCTC	4 cut(s)	438, 471, 483, 607
Mph1103I	ATGCAT	1 cut(s)	168
MroI	TCCGGA	1 cut(s)	109
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	1 cut(s)	27
MspI	CCGG	2 cut(s)	110, 379
MspR9I	CCNGG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	2 cut(s)	37, 295
NarI	GGCGCC	2 cut(s)	226, 298
NdeII	GATC	3 cut(s)	398, 500, 554
NlaIII	CATG	4 cut(s)	35, 341, 554, 561
NlaIV	GGNNCC	3 cut(s)	227, 253, 299
NsbI	TGCGCA	1 cut(s)	39
NsiI	ATGCAT	1 cut(s)	168
NspI	RCATGY	1 cut(s)	35
PagI	TCATGA	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	260
PctI	GAATGC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	242, 404
PflMI	CCANNNNNTGG	1 cut(s)	193
PfoI	TCCNGGA	1 cut(s)	424
PkrI	GCNGC	2 cut(s)	184, 201
PleI	GAGTC	2 cut(s)	349, 582
PluTI	GGCGCC	2 cut(s)	229, 301
PpsI	GAGTC	2 cut(s)	349, 582
Psp124BI	GAGCTC	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	3 cut(s)	227, 253, 299
PspPI	GGNCC	1 cut(s)	56
RsaI	GTAC	2 cut(s)	73, 568
RsaNI	GTAC	2 cut(s)	72, 567
SacI	GAGCTC	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	2 cut(s)	183, 200
Sau3AI	GATC	3 cut(s)	398, 500, 554
Sau96I	GGNCC	1 cut(s)	56
ScaI	AGTACT	1 cut(s)	73
SchI	GAGTC	2 cut(s)	350, 583
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	1 cut(s)	272
SfoI	GGCGCC	2 cut(s)	227, 299
SinI	GGWCC	1 cut(s)	56
Sse9I	AATT	5 cut(s)	6, 131, 191, 382, 514
SsiI	CCGC	2 cut(s)	468, 627
SspDI	GGCGCC	2 cut(s)	225, 297
SspMI	CTAG	2 cut(s)	222, 294
SstI	GAGCTC	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	424
StyI	CCWWGG	2 cut(s)	215, 309
TaaI	ACNGT	2 cut(s)	139, 422
TaiI	ACGT	1 cut(s)	639
TaqI	TCGA	1 cut(s)	476
TasI	AATT	5 cut(s)	6, 131, 191, 382, 514
TatI	WGTACW	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	242, 404
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseI	GCWGC	2 cut(s)	182, 199
TspDTI	ATGAA	2 cut(s)	101, 522
TspGWI	ACGGA	1 cut(s)	48
Van91I	CCANNNNNTGG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	2 cut(s)	382, 514
XceI	RCATGY	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	2 cut(s)	222, 294
ZrmI	AGTACT	1 cut(s)	73
Zsp2I	ATGCAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.