pycom16g21760

Protein VERNALIZATION INSENSITIVE

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
20512737 .. 20514492
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1380 bp
ATGATGAAGCTTCAATGTGAAGTGGGTCCGCTAACTGGCTTACCATTAAGGATGGGTCGGGGTATTGTTAACAGGCTTTCTTCTGGACCAGAGATTCAGAAACTTTGTGCATTTGCTGTGGAGTCACTGGATTTGGTGCTTCAGAAAGCAACATTTCCTCCATTGGCCAAGCCTAATGTACAAGATCCAAGTTTTATTGCTCCGGACATGATTAGATTTGAGAATGTCCATGCTACATCGCTCACCGTGGTTTTGAGTTCCGAATATCCTCCCTCAGAAATTTTAGTTGGTTACAAATTATGGCACTGTAAGGCTGATGATATGAATTATCCAACAGAACCGACTGCAACACTGTTGTTTGCACCAAAGACGAGATTTGTTGTCACTGGACTAACTCCAGCTACAGAGTACTGTTTCAAAGTGACTTCGTTCAATGATTCAAGACATTTAGGCATGTGTGAAGTTCGGTTTTCCACAAGTACTGGTGGAGATGAAGTCCCTAATTGTTCAGTGACACAGAGAAGTCAGAGCCCAGCTACCAACTATAGCAGCCTTTCTAATCCTTCTTCAGTGGAAGATGAAACTAATAATATAACTCCATATGGTGATCAAGCTGATAACCGAGCAGACAACTATATTACTTTTTGCCAGGACACTGAGAATACTGTCTCCGCGGATTTATCCAATGATGCTGTCAATGGCAACAGCATGGACGGAGGACCTACAGTAGATAAAATTTCGTTGCTGGACAAGGAGCACATCAATGGGATGATTGGCTCCATATCTAAATCTGATGTCATAGAACTTGAGCACAAGCAATCACCAGATGGCCATATTGTCGAAGACATCAGCACTGATAACGGTTCAAATTCCCCTGCTCGAACTGGAATGGAATGTGTCCCATTTGGTGGTAGCTCAGAGGCTGGCGTACCCATCACTCCTTGCAAAATCGACCTACTTAAAGATGGGCTGGGAAGGAATGTAAGATCAAATTCCAGTAGCAAGGATTTAAAAAATGGAAGTGGGAAAGGAGAGGAACCCCAAGATGGCAGCACATCGAAGAAGAGAAGTGCTGAAAGGAAAGATGAGGAGTGTGTGGCAAACAACATCTCAGATAGGGATTTTGAGTATTACGTGAAGATTATCAGATGGTTAGAGTGCGAGGGACATCTCGAGCAGAACTTCCGGCAGAAATTTCTTACCTGGTATAGCTTGAGAGCTACCCCTCAGGAGGTAAGGATTGTGAAAGTGTTTGTAGATACCTTTATAGGAGATCCTGCATCGCTTGCAGGGCAACTTGTCGACACCTTCTCAGAGAGTATTTCGAGTAAGAAATCATCTGTCGTGCCAAACGGGTTCTGCATGAAGCTTTGGCATTAA

Protein Analysis

460

Amino Acids

50.3

Weight (kDa)

5.05

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fn3_VIN3 PF23376 71 - 159 3.2e-36 VIN3-like, fibronectin type-III domain
VIN3_C PF23380 372 - 445 9.9e-39 VIN3-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 908
AccI GTMKAC 1 cut(s) 1302
AccII CGCG 1 cut(s) 674
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 3 cut(s) 29, 672, 674
AclWI GGATC 2 cut(s) 179, 1268
AcoI YGGCCR 2 cut(s) 165, 829
AcsI RAATTY 5 cut(s) 279, 735, 868, 991, 1193
AcuI CTGAAG 2 cut(s) 125, 552
AfaI GTAC 4 cut(s) 180, 410, 481, 930
AfiI CCNNNNNNNGG 4 cut(s) 35, 908, 1046, 1231
AgsI TTSAA 5 cut(s) 14, 418, 433, 441, 867
AjnI CCWGG 2 cut(s) 648, 1202
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 8 cut(s) 10, 401, 536, 614, 915, 1212, 1220, 1369
AluI AGCT 8 cut(s) 10, 401, 536, 614, 915, 1212, 1220, 1369
Alw21I GWGCWC 2 cut(s) 759, 813
Alw26I GTCTC 1 cut(s) 673
AlwI GGATC 2 cut(s) 179, 1268
AlwNI CAGNNNCTG 1 cut(s) 923
Ama87I CYCGRG 1 cut(s) 1172
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 2 cut(s) 165, 829
ApeKI GCWGC 2 cut(s) 549, 1050
ApoI RAATTY 5 cut(s) 279, 735, 868, 991, 1193
AspS9I GGNCC 3 cut(s) 26, 86, 719
AsuHPI GGTGA 3 cut(s) 235, 617, 813
AvaI CYCGRG 1 cut(s) 1172
AvaII GGWCC 3 cut(s) 26, 86, 719
AxyI CCTNAGG 1 cut(s) 1227
BalI TGGCCA 2 cut(s) 167, 831
BanII GRGCYC 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 849
Bbv12I GWGCWC 2 cut(s) 759, 813
BbvI GCAGC 2 cut(s) 561, 1062
BccI CCATC 6 cut(s) 46, 821, 941, 959, 1040, 1143
BciT130I CCWGG 2 cut(s) 650, 1204
BclI TGATCA 1 cut(s) 607
BcoDI GTCTC 1 cut(s) 673
BfmI CTRYAG 3 cut(s) 402, 544, 723
BisI GCNGC 2 cut(s) 550, 1051
BlsI GCNGC 2 cut(s) 551, 1052
BmcAI AGTACT 2 cut(s) 410, 481
Bme1390I CCNGG 2 cut(s) 650, 1204
Bme18I GGWCC 3 cut(s) 26, 86, 719
BmeT110I CYCGRG 1 cut(s) 1172
BmgT120I GGNCC 3 cut(s) 26, 86, 719
BmiI GGNNCC 3 cut(s) 27, 778, 1038
BmrFI CCNGG 2 cut(s) 650, 1204
BmsI GCATC 2 cut(s) 679, 1289
BpiI GAAGAC 1 cut(s) 849
BpmI CTGGAG 1 cut(s) 381
BpuEI CTTGAG 2 cut(s) 827, 1234
BsaAI YACGTR 1 cut(s) 1135
BsaJI CCNNGG 2 cut(s) 246, 672
BsaWI WCCGGW 1 cut(s) 202
BsaXI ACNNNNNCTCC 4 cut(s) 142, 172, 480, 510
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 908, 1046, 1231
Bse1I ACTGG 6 cut(s) 40, 132, 391, 487, 889, 996
Bse21I CCTNAGG 1 cut(s) 1227
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 2 cut(s) 650, 1204
BseDI CCNNGG 2 cut(s) 246, 672
BseGI GGATG 2 cut(s) 57, 774
BseLI CCNNNNNNNGG 4 cut(s) 35, 908, 1046, 1231
BseMII CTCAG 6 cut(s) 288, 648, 930, 1125, 1241, 1326
BseNI ACTGG 6 cut(s) 40, 132, 391, 487, 889, 996
BseRI GAGGAG 1 cut(s) 1103
BseXI GCAGC 2 cut(s) 561, 1062
BseYI CCCAGC 2 cut(s) 532, 970
Bsh1236I CGCG 1 cut(s) 674
BshFI GGCC 2 cut(s) 167, 831
BsiHKAI GWGCWC 2 cut(s) 759, 813
BsiHKCI CYCGRG 1 cut(s) 1172
BsiSI CCGG 2 cut(s) 203, 1186
BslFI GGGAC 3 cut(s) 482, 884, 1179
BslI CCNNNNNNNGG 4 cut(s) 35, 908, 1046, 1231
BsmAI GTCTC 1 cut(s) 673
BsmFI GGGAC 3 cut(s) 482, 884, 1179
BsnI GGCC 2 cut(s) 167, 831
BsoBI CYCGRG 1 cut(s) 1172
Bsp1286I GDGCHC 3 cut(s) 533, 759, 813
Bsp13I TCCGGA 1 cut(s) 202
Bsp1407I TGTACA 1 cut(s) 178
Bsp143I GATC 4 cut(s) 184, 607, 986, 1273
BspACI CCGC 3 cut(s) 29, 672, 674
BspANI GGCC 2 cut(s) 167, 831
BspCNI CTCAG 6 cut(s) 287, 649, 929, 1124, 1240, 1325
BspEI TCCGGA 1 cut(s) 202
BspFNI CGCG 1 cut(s) 674
BspLI GGNNCC 3 cut(s) 27, 778, 1038
BspPI GGATC 2 cut(s) 179, 1268
BsrGI TGTACA 1 cut(s) 178
BsrI ACTGG 6 cut(s) 40, 132, 391, 487, 889, 996
BssECI CCNNGG 2 cut(s) 246, 672
BssMI GATC 4 cut(s) 184, 607, 986, 1273
Bst2UI CCWGG 2 cut(s) 650, 1204
Bst4CI ACNGT 7 cut(s) 247, 308, 354, 413, 667, 727, 863
Bst6I CTCTTC 1 cut(s) 1058
BstAPI GCANNNNNTGC 1 cut(s) 1286
BstAUI TGTACA 1 cut(s) 178
BstBAI YACGTR 1 cut(s) 1135
BstC8I GCNNGC 2 cut(s) 925, 1287
BstDEI CTNAG 6 cut(s) 274, 657, 916, 1111, 1227, 1312
BstDSI CCRYGG 2 cut(s) 246, 672
BstF5I GGATG 2 cut(s) 57, 774
BstFNI CGCG 1 cut(s) 674
BstKTI GATC 4 cut(s) 187, 610, 989, 1276
BstMAI GTCTC 1 cut(s) 673
BstMBI GATC 4 cut(s) 184, 607, 986, 1273
BstMWI GCNNNNNNNGC 2 cut(s) 1286, 1291
BstNI CCWGG 2 cut(s) 650, 1204
BstNSI RCATGY 1 cut(s) 457
BstSCI CCNGG 2 cut(s) 648, 1202
BstSFI CTRYAG 3 cut(s) 402, 544, 723
BstUI CGCG 1 cut(s) 674
BstV1I GCAGC 2 cut(s) 561, 1062
BstV2I GAAGAC 1 cut(s) 849
BstX2I RGATCY 2 cut(s) 184, 1273
BstYI RGATCY 2 cut(s) 184, 1273
Bsu36I CCTNAGG 1 cut(s) 1227
BsuRI GGCC 2 cut(s) 167, 831
BtgI CCRYGG 2 cut(s) 246, 672
BtgZI GCGATG 2 cut(s) 222, 1266
BtsCI GGATG 2 cut(s) 57, 774
BtsIMutI CAGTG 8 cut(s) 125, 304, 350, 384, 516, 576, 654, 852
Cac8I GCNNGC 2 cut(s) 925, 1287
CaiI CAGNNNCTG 1 cut(s) 923
Cfr13I GGNCC 3 cut(s) 26, 86, 719
Cfr42I CCGCGG 1 cut(s) 675
CsiI ACCWGGT 1 cut(s) 1202
Csp6I GTAC 4 cut(s) 179, 409, 480, 929
CviAII CATG 5 cut(s) 208, 230, 454, 709, 1363
CviQI GTAC 4 cut(s) 179, 409, 480, 929
DdeI CTNAG 6 cut(s) 274, 657, 916, 1111, 1227, 1312
DpnI GATC 4 cut(s) 186, 609, 988, 1275
DpnII GATC 4 cut(s) 184, 607, 986, 1273
DraI TTTAAA 1 cut(s) 1011
EaeI YGGCCR 2 cut(s) 165, 829
Eam1104I CTCTTC 1 cut(s) 1058
EarI CTCTTC 1 cut(s) 1058
Eco24I GRGCYC 1 cut(s) 533
Eco47I GGWCC 3 cut(s) 26, 86, 719
Eco57I CTGAAG 2 cut(s) 125, 552
Eco81I CCTNAGG 1 cut(s) 1227
Eco88I CYCGRG 1 cut(s) 1172
EcoO109I RGGNCCY 1 cut(s) 719
EcoRII CCWGG 2 cut(s) 648, 1202
EcoT38I GRGCYC 1 cut(s) 533
FaeI CATG 5 cut(s) 211, 233, 457, 712, 1366
FaqI GGGAC 3 cut(s) 482, 884, 1179
FatI CATG 5 cut(s) 207, 229, 453, 708, 1362
FauNDI CATATG 1 cut(s) 601
FbaI TGATCA 1 cut(s) 607
FblI GTMKAC 1 cut(s) 1302
Fnu4HI GCNGC 2 cut(s) 550, 1051
FokI GGATG 2 cut(s) 64, 781
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 2 cut(s) 550, 1051
GluI GCNGC 2 cut(s) 550, 1051
GsaI CCCAGC 2 cut(s) 536, 974
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 2 cut(s) 167, 831
HapII CCGG 2 cut(s) 203, 1186
Hin1II CATG 5 cut(s) 211, 233, 457, 712, 1366
HincII GTYRAC 2 cut(s) 70, 1303
HindII GTYRAC 2 cut(s) 70, 1303
HindIII AAGCTT 2 cut(s) 8, 1367
HinfI GANTC 3 cut(s) 94, 122, 437
HpaI GTTAAC 1 cut(s) 70
HpaII CCGG 2 cut(s) 203, 1186
HphI GGTGA 3 cut(s) 235, 617, 813
Hpy166II GTNNAC 2 cut(s) 70, 1303
Hpy188III TCNNGA 5 cut(s) 84, 203, 441, 1172, 1229
Hpy8I GTNNAC 2 cut(s) 70, 1303
HpyAV CCTTC 3 cut(s) 573, 969, 1318
HpyCH4III ACNGT 7 cut(s) 247, 308, 354, 413, 667, 727, 863
HpyCH4IV ACGT 1 cut(s) 1134
HpyCH4V TGCA 7 cut(s) 110, 347, 362, 945, 1280, 1289, 1362
HpyF10VI GCNNNNNNNGC 2 cut(s) 1286, 1291
HpyF3I CTNAG 6 cut(s) 274, 657, 916, 1111, 1227, 1312
HpySE526I ACGT 1 cut(s) 1134
Hsp92II CATG 5 cut(s) 211, 233, 457, 712, 1366
Kpn2I TCCGGA 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 607
KspAI GTTAAC 1 cut(s) 70
KspI CCGCGG 1 cut(s) 675
Kzo9I GATC 4 cut(s) 184, 607, 986, 1273
LmnI GCTCC 3 cut(s) 205, 754, 782
Lsp1109I GCAGC 2 cut(s) 561, 1062
LweI GCATC 2 cut(s) 679, 1289
MabI ACCWGGT 1 cut(s) 1202
MaeII ACGT 1 cut(s) 1134
MaeIII GTNAC 5 cut(s) 123, 290, 382, 421, 511
MalI GATC 4 cut(s) 186, 609, 988, 1275
MboI GATC 4 cut(s) 184, 607, 986, 1273
MboII GAAGA 7 cut(s) 72, 558, 587, 854, 1072, 1075, 1150
MflI RGATCY 2 cut(s) 184, 1273
MhlI GDGCHC 3 cut(s) 533, 759, 813
MlsI TGGCCA 2 cut(s) 167, 831
MluCI AATT 8 cut(s) 279, 296, 325, 502, 735, 868, 991, 1193
MluNI TGGCCA 2 cut(s) 167, 831
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 356
Mox20I TGGCCA 2 cut(s) 167, 831
MroI TCCGGA 1 cut(s) 202
MscI TGGCCA 2 cut(s) 167, 831
MseI TTAA 5 cut(s) 47, 69, 960, 1010, 1378
MslI CAYNNNNRTG 1 cut(s) 762
Msp20I TGGCCA 2 cut(s) 167, 831
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 2 cut(s) 203, 1186
MspR9I CCNGG 2 cut(s) 650, 1204
MvaI CCWGG 2 cut(s) 650, 1204
MvnI CGCG 1 cut(s) 674
MwoI GCNNNNNNNGC 2 cut(s) 1286, 1291
NdeI CATATG 1 cut(s) 601
NdeII GATC 4 cut(s) 184, 607, 986, 1273
NlaIII CATG 5 cut(s) 211, 233, 457, 712, 1366
NlaIV GGNNCC 3 cut(s) 27, 778, 1038
NmuCI GTSAC 4 cut(s) 123, 382, 421, 511
NspI RCATGY 1 cut(s) 457
PaeR7I CTCGAG 1 cut(s) 1172
PfeI GAWTC 2 cut(s) 94, 437
PflMI CCANNNNNTGG 1 cut(s) 908
PkrI GCNGC 2 cut(s) 551, 1052
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 1135
PpuMI RGGWCCY 1 cut(s) 719
Psp5II RGGWCCY 1 cut(s) 719
Psp6I CCWGG 2 cut(s) 648, 1202
PspFI CCCAGC 2 cut(s) 532, 970
PspGI CCWGG 2 cut(s) 648, 1202
PspN4I GGNNCC 3 cut(s) 27, 778, 1038
PspPI GGNCC 3 cut(s) 26, 86, 719
PspPPI RGGWCCY 1 cut(s) 719
PstNI CAGNNNCTG 1 cut(s) 923
PsuI RGATCY 2 cut(s) 184, 1273
RsaI GTAC 4 cut(s) 180, 410, 481, 930
RsaNI GTAC 4 cut(s) 179, 409, 480, 929
RseI CAYNNNNRTG 1 cut(s) 762
SacII CCGCGG 1 cut(s) 675
SalI GTCGAC 1 cut(s) 1301
SaqAI TTAA 5 cut(s) 47, 69, 960, 1010, 1378
SatI GCNGC 2 cut(s) 550, 1051
Sau3AI GATC 4 cut(s) 184, 607, 986, 1273
Sau96I GGNCC 3 cut(s) 26, 86, 719
ScaI AGTACT 2 cut(s) 410, 481
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 650, 1204
SduI GDGCHC 3 cut(s) 533, 759, 813
SexAI ACCWGGT 1 cut(s) 1202
SfaNI GCATC 2 cut(s) 679, 1289
SfcI CTRYAG 3 cut(s) 402, 544, 723
Sfr274I CTCGAG 1 cut(s) 1172
Sfr303I CCGCGG 1 cut(s) 675
SgrBI CCGCGG 1 cut(s) 675
SinI GGWCC 3 cut(s) 26, 86, 719
SlaI CTCGAG 1 cut(s) 1172
SmiMI CAYNNNNRTG 1 cut(s) 762
SmlI CTYRAG 3 cut(s) 806, 1172, 1213
SmoI CTYRAG 3 cut(s) 806, 1172, 1213
Sse9I AATT 8 cut(s) 279, 296, 325, 502, 735, 868, 991, 1193
SsiI CCGC 3 cut(s) 29, 672, 674
StyD4I CCNGG 2 cut(s) 648, 1202
TaaI ACNGT 7 cut(s) 247, 308, 354, 413, 667, 727, 863
TaiI ACGT 1 cut(s) 1137
TaqI TCGA 7 cut(s) 840, 880, 951, 1058, 1173, 1302, 1325
TasI AATT 8 cut(s) 279, 296, 325, 502, 735, 868, 991, 1193
TatI WGTACW 3 cut(s) 178, 408, 479
TfiI GAWTC 2 cut(s) 94, 437
Tru1I TTAA 5 cut(s) 47, 69, 960, 1010, 1378
Tru9I TTAA 5 cut(s) 47, 69, 960, 1010, 1378
TscAI CASTG 8 cut(s) 132, 311, 357, 391, 516, 576, 661, 859
TseFI GTSAC 4 cut(s) 123, 382, 421, 511
TseI GCWGC 2 cut(s) 549, 1050
Tsp45I GTSAC 4 cut(s) 123, 382, 421, 511
TspDTI ATGAA 5 cut(s) 20, 338, 507, 594, 1379
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 8 cut(s) 132, 311, 357, 391, 516, 576, 661, 859
Van91I CCANNNNNTGG 1 cut(s) 908
VpaK11BI GGWCC 3 cut(s) 26, 86, 719
XapI RAATTY 5 cut(s) 279, 735, 868, 991, 1193
XceI RCATGY 1 cut(s) 457
XhoI CTCGAG 1 cut(s) 1172
XmiI GTMKAC 1 cut(s) 1302
ZrmI AGTACT 2 cut(s) 410, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.