Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0015161

Physical Location & Seq

Genomic Coordinates Forward (+)

23855577 .. 23856188

Gene Structure 612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCTTCCTCCTCCATCTCAATCTCCTCCTCCTCGTCCTCCTCCCCACCACCACCACCACCACAGCCATGTAATTCCACAAACACCACCTCCAAAACCCAACCCAAAGCTCCTTTCTCTAATCATCAAGGCCCTGGTGATGACCTTTATAACCTCCGTCTTCTTCCTCTTCCTCGGCTTCGCCGCCACCGTTCTCTTCCCCTTCTTCGCCGTTGGCGCTCTCCACCGCCGCCGCACCCAATCCCCCCATCCCTCATCTGGGTTCTCTCCCAAACATCTCAAGACCCTCCCCCAATTCCGCTTCAGAGCTGCCCGGCCCCAGCCCCAATCGCAATCCTCGTCCTCGTCGCCGTCGCCGCAGACAGACTGCGTTGTTTGCCTCGACTCGTTCCGGGAAGGCCAGTGGTGCAGGAAACTCCCGGCGTGCGATCACGTGTTCCATAGGCGCTGCCTGGACACCTGGTTGGTTAAGGTGTCGGCGTGCCCGATTTGCCGAACACGTGTAAGGTTAGATTACGGGGACACGGAGTCGGTGGTTGATTTGGACGGAGAAGAGGAAGCAAAGTACTTGTGGAATTTTAATAGAAACAACAATGGTTTGAGGGTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

204

Amino Acids

23.03

Weight (kDa)

9.69

Isoelectric Point (pI)

76.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	122 - 165	1.8e-12	Ring finger domain
zf-RING_11	PF17123	122 - 151	2.5e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	123 - 164	1.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	124 - 165	2.4e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18670 AT4G30370
fragaria_vesca	FvH4_4g08660
malus_domestica	MD16G1263200.v1.1
prunus_persica	Prupe.1G096100_v2.0.a1
pyrus_communis	pycom16g23210
rosa_chinensis	RchiOBHm_Chr4g0404731
rosa_laevigata	RLG00000008904
rosa_multiflora	Rmu_sc0001179.1_g000046
rosa_roxburghii	Rroxscaffold_5G00348920
rosa_rugosa	Rorug01G0142000.1 Rorug04G0049100
rosa_samantha	Rh4AG124800 Rh4BG119100 Rh4DG118200
rosa_wichuraiana	Rw4G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
AciI	CCGC	6 cut(s)	183, 226, 229, 232, 298, 356
AcsI	RAATTY	1 cut(s)	574
AcuI	CTGAAG	1 cut(s)	286
AcvI	CACGTG	2 cut(s)	433, 500
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	2 cut(s)	257, 258
AflIII	ACRYGT	3 cut(s)	432, 497, 499
AhdI	GACNNNNNGTC	1 cut(s)	526
AjnI	CCWGG	3 cut(s)	132, 450, 458
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	2 cut(s)	109, 308
AluI	AGCT	2 cut(s)	109, 308
AoxI	GGCC	3 cut(s)	129, 314, 397
ApeKI	GCWGC	2 cut(s)	308, 447
ApoI	RAATTY	1 cut(s)	574
AspLEI	GCGC	2 cut(s)	218, 447
AspS9I	GGNCC	2 cut(s)	130, 315
AsuC2I	CCSGG	3 cut(s)	313, 392, 419
AsuHPI	GGTGA	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	485
BbrPI	CACGTG	2 cut(s)	433, 500
BbsI	GAAGAC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	295, 434
BccI	CCATC	2 cut(s)	22, 255
BceAI	ACGGC	2 cut(s)	194, 334
BciT130I	CCWGG	3 cut(s)	134, 452, 460
BcnI	CCSGG	3 cut(s)	313, 392, 419
BfoI	RGCGCY	2 cut(s)	219, 448
BisI	GCNGC	6 cut(s)	183, 229, 232, 309, 356, 448
BlsI	GCNGC	6 cut(s)	184, 230, 233, 310, 357, 449
BmcAI	AGTACT	1 cut(s)	566
Bme1390I	CCNGG	6 cut(s)	134, 313, 392, 419, 452, 460
BmeRI	GACNNNNNGTC	1 cut(s)	526
BmgT120I	GGNCC	2 cut(s)	130, 315
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	6 cut(s)	134, 313, 392, 419, 452, 460
BpiI	GAAGAC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	3 cut(s)	313, 392, 419
BsaAI	YACGTR	2 cut(s)	433, 500
BsaJI	CCNNGG	2 cut(s)	132, 172
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 258
Bse1I	ACTGG	1 cut(s)	400
BseBI	CCWGG	3 cut(s)	134, 452, 460
BseDI	CCNNGG	2 cut(s)	132, 172
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	2 cut(s)	257, 258
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	4 cut(s)	15, 18, 21, 30
BseSI	GKGCMC	1 cut(s)	485
BseXI	GCAGC	2 cut(s)	295, 434
BseYI	CCCAGC	1 cut(s)	318
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	3 cut(s)	131, 316, 399
BsiSI	CCGG	3 cut(s)	313, 391, 419
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	257, 258
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	3 cut(s)	131, 316, 399
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	6 cut(s)	183, 226, 229, 232, 298, 356
BspANI	GGCC	3 cut(s)	131, 316, 399
BspLI	GGNNCC	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	132, 172
BssMI	GATC	1 cut(s)	427
Bst2UI	CCWGG	3 cut(s)	134, 452, 460
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	3 cut(s)	173, 200, 546
BstBAI	YACGTR	2 cut(s)	433, 500
BstC8I	GCNNGC	2 cut(s)	424, 481
BstF5I	GGATG	1 cut(s)	247
BstH2I	RGCGCY	2 cut(s)	219, 448
BstHHI	GCGC	2 cut(s)	218, 447
BstKTI	GATC	1 cut(s)	430
BstMBI	GATC	1 cut(s)	427
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 328, 355, 375, 405, 489
BstNI	CCWGG	3 cut(s)	134, 452, 460
BstSCI	CCNGG	6 cut(s)	132, 311, 390, 417, 450, 458
BstSLI	GKGCMC	1 cut(s)	485
BstV1I	GCAGC	2 cut(s)	295, 434
BstV2I	GAAGAC	1 cut(s)	151
BsuRI	GGCC	3 cut(s)	131, 316, 399
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	407
Cac8I	GCNNGC	2 cut(s)	424, 481
CfoI	GCGC	2 cut(s)	218, 447
Cfr13I	GGNCC	2 cut(s)	130, 315
CsiI	ACCWGGT	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	8 cut(s)	66, 109, 131, 177, 308, 316, 322, 399
CviKI_1	RGCY	8 cut(s)	66, 109, 131, 177, 308, 316, 322, 399
CviQI	GTAC	1 cut(s)	565
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
DriI	GACNNNNNGTC	1 cut(s)	526
Eam1104I	CTCTTC	3 cut(s)	173, 200, 546
Eam1105I	GACNNNNNGTC	1 cut(s)	526
EarI	CTCTTC	3 cut(s)	173, 200, 546
Eco57I	CTGAAG	1 cut(s)	286
Eco72I	CACGTG	2 cut(s)	433, 500
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRII	CCWGG	3 cut(s)	132, 450, 458
FaeI	CATG	1 cut(s)	71
FaiI	YATR	3 cut(s)	69, 149, 441
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	1 cut(s)	67
Fnu4HI	GCNGC	6 cut(s)	183, 229, 232, 309, 356, 448
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	6 cut(s)	183, 229, 232, 309, 356, 448
GlaI	GCGC	2 cut(s)	217, 446
GluI	GCNGC	6 cut(s)	183, 229, 232, 309, 356, 448
GsaI	CCCAGC	1 cut(s)	322
HaeII	RGCGCY	2 cut(s)	219, 448
HaeIII	GGCC	3 cut(s)	131, 316, 399
HapII	CCGG	3 cut(s)	313, 391, 419
HhaI	GCGC	2 cut(s)	218, 447
Hin1II	CATG	1 cut(s)	71
Hin6I	GCGC	2 cut(s)	216, 445
HinP1I	GCGC	2 cut(s)	216, 445
HinfI	GANTC	2 cut(s)	383, 527
HpaII	CCGG	3 cut(s)	313, 391, 419
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	1 cut(s)	280
Hpy99I	CGWCG	2 cut(s)	349, 355
HpyAV	CCTTC	2 cut(s)	211, 389
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	2 cut(s)	432, 499
HpyCH4V	TGCA	1 cut(s)	408
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 328, 355, 375, 405, 489
HpySE526I	ACGT	2 cut(s)	432, 499
Hsp92II	CATG	1 cut(s)	71
HspAI	GCGC	2 cut(s)	216, 445
Kzo9I	GATC	1 cut(s)	427
LmnI	GCTCC	1 cut(s)	114
Lsp1109I	GCAGC	2 cut(s)	295, 434
MabI	ACCWGGT	1 cut(s)	458
MaeII	ACGT	2 cut(s)	432, 499
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	6 cut(s)	151, 154, 160, 187, 196, 563
MhlI	GDGCHC	1 cut(s)	485
MluCI	AATT	3 cut(s)	72, 293, 574
MlyI	GAGTC	2 cut(s)	377, 536
MseI	TTAA	2 cut(s)	468, 579
MslI	CAYNNNNRTG	1 cut(s)	66
MspI	CCGG	3 cut(s)	313, 391, 419
MspR9I	CCNGG	6 cut(s)	134, 313, 392, 419, 452, 460
MvaI	CCWGG	3 cut(s)	134, 452, 460
MwoI	GCNNNNNNNGC	6 cut(s)	215, 328, 355, 375, 405, 489
NciI	CCSGG	3 cut(s)	313, 392, 419
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	317
NmeAIII	GCCGAG	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	3 cut(s)	186, 335, 482
PfoI	TCCNGGA	1 cut(s)	390
PkrI	GCNGC	6 cut(s)	184, 230, 233, 310, 357, 449
PleI	GAGTC	2 cut(s)	377, 535
PmaCI	CACGTG	2 cut(s)	433, 500
PmlI	CACGTG	2 cut(s)	433, 500
PpsI	GAGTC	2 cut(s)	377, 535
Ppu21I	YACGTR	2 cut(s)	433, 500
PsiI	TTATAA	1 cut(s)	149
Psp6I	CCWGG	3 cut(s)	132, 450, 458
PspCI	CACGTG	2 cut(s)	433, 500
PspFI	CCCAGC	1 cut(s)	318
PspGI	CCWGG	3 cut(s)	132, 450, 458
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	2 cut(s)	130, 315
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	468, 579
SatI	GCNGC	6 cut(s)	183, 229, 232, 309, 356, 448
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	2 cut(s)	130, 315
ScaI	AGTACT	1 cut(s)	566
SchI	GAGTC	2 cut(s)	377, 536
ScrFI	CCNGG	6 cut(s)	134, 313, 392, 419, 452, 460
SduI	GDGCHC	1 cut(s)	485
SexAI	ACCWGGT	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	3 cut(s)	72, 293, 574
SsiI	CCGC	6 cut(s)	183, 226, 229, 232, 298, 356
StyD4I	CCNGG	6 cut(s)	132, 311, 390, 417, 450, 458
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	2 cut(s)	435, 502
TaqI	TCGA	1 cut(s)	381
TasI	AATT	3 cut(s)	72, 293, 574
TatI	WGTACW	1 cut(s)	564
TauI	GCSGC	4 cut(s)	185, 231, 234, 358
Tru1I	TTAA	2 cut(s)	468, 579
Tru9I	TTAA	2 cut(s)	468, 579
TscAI	CASTG	1 cut(s)	407
TseI	GCWGC	2 cut(s)	308, 447
TspGWI	ACGGA	3 cut(s)	145, 539, 561
TspRI	CASTG	1 cut(s)	407
XapI	RAATTY	1 cut(s)	574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
ZrmI	AGTACT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.