pycom16g23700

ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
24902807 .. 24909071
6265 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1497 bp
ATGGCGGAATCGGTGGAGCTTCCCACTCGCCTTGGCATCCTTCCTTTCCGAAACAAGGTCCTCCTACCCGGCGCCATCATTCGAATTCGCTGCACTTCACCCAGCAGTGTCAAATTGGTGGAGCAAGAGTTGTGGCAGCGCGAAGAGAAGGGGTTAATTGGTATTCTTCCCGTTCGAGATGCTGCTGATGCAGCAACTGTGGATCCTGTGGTGTCTCAAGGTGTGGGAACTGATTCTGGTGAAAGAAGCTCTAGAGTTCAAGTTGGTGCATCTGATTCTCACAGGCTTGATGGAAAAAATCAGCAGGAAGTTATTCATTGGCATTCAAGGGGAGTTGCTGCACGGGCTTTACATCTCTCAAGAGGAGTTGAGAAGCCAAGTGGGAGGGTTACATATGTAGTTGTCCTTGAAGGTTTGTGTAGATTCAACGTCCAGGAACTTAGCACAAGAGGAACATATTATACTGCACGAATTTCTCCACTTGAAATGACAAAGACTGAAATGGAGCAAGTGGAGCAAGATCCGGACTTCGTATCGTTGTCTCGCCAATTCAAAGCAACTGCTACGGAGCTGATTTCTGTTCTTGAGCAGAAACAAAAGACTGGGGGAAGAACAAAAGTTCTTCTGGAGACAGTTCCGGTTCACAAGTTGGCAGACATATTTGTTGCTAGCTTTGAGATAAGTTTTGAGGAGCAATTGTCTATGTTGGATTCAGTCGATCTGAAAGTAAGACTTTCCAAAGCTACTGAGCTAGTTGACAGGCATTTGCAGTCTATACATGTAGCAGAGAAGATTACACAAAAAGTTGAGGGTCAATTGTCAAAATCACAGAAAGAGTTTCTTTTGCGTCAGCAGATGAGAGCTATAAAAGAGGAGCTTGGCGACAATGATGACGATGAAGATGATGTAGTTGCCTTGGAAAGAAAGATGCAAAGCTCAGGAATGCCTTCAAACATTTGGAAGCACGCACAGAGGGAGTTGAGGAGGCTGAAAAAGATGCAACCCCAACAACCTGGATATAATAGTTCACGTGTTTACCTAGACCTTCTTGCTGATCTTCCCTGGCAGAAGGCCAGTGAAGAATATGAATTGGATTTAAGGGCTGCAAAAGAACGTCTTGACAGTGATCACTATGGTTTAACTAAGGTCAAGCAGCGGATTATTGAGTATCTGGCTGTTCGCAAGCTCAAACCAGATGCCAGAGGTCCCGTGTTGTGTTTTGTTGGACCGCCCGGTGTTGGAAAAACGTCTTTGGCATCATCTATTGCTGCTGCTTTGGGCAGAAAATTTATACGCATATCCCTTGGTGGTGTTAAGGATGAGGCTGATATTCGAGGACACAGGAGGACATACATTGGAAGCATGCCGGGTAGACTCATTGATGGATTAAAGAGAGTAGCTGTTTGCAATCCGGTCATGCTGCTAGATGAAATTGACAAGACAGGTTCTGATGTGCGCGGTGATCGATCAATATTCAGCTCTACTGGAGGTTCTTGA

Protein Analysis

499

Amino Acids

55.48

Weight (kDa)

8.91

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LON_substr_bdg PF02190 11 - 254 1.2e-29 ATP-dependent protease La (LON) substrate-binding domain
AAA PF00004 405 - 485 1.5e-14 ATPase family associated with various cellular activities (AAA)
AAA_5 PF07728 405 - 485 5e-06 AAA domain (dynein-related subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 1372
AccII CGCG 2 cut(s) 141, 1458
AccIII TCCGGA 1 cut(s) 523
AciI CCGC 4 cut(s) 5, 1156, 1229, 1458
AclWI GGATC 3 cut(s) 197, 210, 515
AcsI RAATTY 3 cut(s) 84, 471, 1286
AcvI CACGTG 1 cut(s) 1031
AcyI GRCGYC 1 cut(s) 72
AfiI CCNNNNNNNGG 2 cut(s) 55, 1238
AflIII ACRYGT 2 cut(s) 778, 1030
AgsI TTSAA 7 cut(s) 260, 327, 410, 427, 485, 553, 951
AjnI CCWGG 3 cut(s) 432, 1012, 1061
Alw26I GTCTC 3 cut(s) 219, 546, 623
AlwI GGATC 3 cut(s) 197, 210, 515
AlwNI CAGNNNCTG 2 cut(s) 197, 1448
Aor13HI TCCGGA 1 cut(s) 523
AoxI GGCC 1 cut(s) 1071
ApoI RAATTY 3 cut(s) 84, 471, 1286
Asp700I GAANNNNTTC 3 cut(s) 232, 312, 946
AspLEI GCGC 3 cut(s) 74, 141, 1458
AspS9I GGNCC 3 cut(s) 58, 1205, 1226
AsuC2I CCSGG 3 cut(s) 69, 1233, 1368
AsuHPI GGTGA 3 cut(s) 90, 251, 1472
AsuII TTCGAA 1 cut(s) 82
AsuNHI GCTAGC 1 cut(s) 668
AvaII GGWCC 3 cut(s) 58, 1205, 1226
BamHI GGATCC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 71
BbrPI CACGTG 1 cut(s) 1031
BccI CCATC 3 cut(s) 83, 284, 1376
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BciT130I CCWGG 3 cut(s) 434, 1014, 1063
BclI TGATCA 1 cut(s) 1126
BcnI CCSGG 3 cut(s) 69, 1233, 1368
BcoDI GTCTC 3 cut(s) 219, 546, 623
BfaI CTAG 5 cut(s) 252, 669, 752, 1040, 1424
BfoI RGCGCY 1 cut(s) 75
Bme1390I CCNGG 6 cut(s) 69, 434, 1014, 1063, 1233, 1368
Bme18I GGWCC 3 cut(s) 58, 1205, 1226
BmgT120I GGNCC 3 cut(s) 58, 1205, 1226
BmiI GGNNCC 3 cut(s) 73, 204, 1207
BmrFI CCNGG 6 cut(s) 69, 434, 1014, 1063, 1233, 1368
BmrI ACTGGG 1 cut(s) 612
BmsI GCATC 8 cut(s) 45, 169, 178, 278, 918, 987, 1186, 1265
BmtI GCTAGC 1 cut(s) 672
BmuI ACTGGG 1 cut(s) 612
BpmI CTGGAG 1 cut(s) 647
Bpu10I CCTNAGC 1 cut(s) 937
Bpu14I TTCGAA 1 cut(s) 82
BpuEI CTTGAG 3 cut(s) 201, 343, 605
BpuMI CCSGG 3 cut(s) 69, 1233, 1368
Bsa29I ATCGAT 1 cut(s) 1465
BsaAI YACGTR 1 cut(s) 1031
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 4 cut(s) 31, 915, 1061, 1303
BsaWI WCCGGW 3 cut(s) 523, 637, 1411
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 683, 713
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 1238
Bse1I ACTGG 3 cut(s) 607, 1074, 1489
BseAI TCCGGA 1 cut(s) 523
BseBI CCWGG 3 cut(s) 434, 1014, 1063
BseCI ATCGAT 1 cut(s) 1465
BseDI CCNNGG 4 cut(s) 31, 915, 1061, 1303
BseGI GGATG 2 cut(s) 36, 1324
BseLI CCNNNNNNNGG 2 cut(s) 55, 1238
BseMII CTCAG 2 cut(s) 738, 951
BseNI ACTGG 3 cut(s) 607, 1074, 1489
BseRI GAGGAG 4 cut(s) 378, 704, 887, 997
BseYI CCCAGC 1 cut(s) 101
BsgI GTGCAG 3 cut(s) 76, 324, 450
Bsh1236I CGCG 2 cut(s) 141, 1458
BshFI GGCC 1 cut(s) 1073
BshNI GGYRCC 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 1465
BsiSI CCGG 6 cut(s) 69, 524, 638, 1233, 1367, 1412
BslFI GGGAC 1 cut(s) 1191
BslI CCNNNNNNNGG 2 cut(s) 55, 1238
BsmAI GTCTC 3 cut(s) 219, 546, 623
BsmFI GGGAC 1 cut(s) 1191
BsmI GAATGC 2 cut(s) 322, 948
BsnI GGCC 1 cut(s) 1073
Bsp119I TTCGAA 1 cut(s) 82
Bsp13I TCCGGA 1 cut(s) 523
Bsp143I GATC 7 cut(s) 202, 520, 718, 1054, 1126, 1462, 1466
BspACI CCGC 4 cut(s) 5, 1156, 1229, 1458
BspANI GGCC 1 cut(s) 1073
BspCNI CTCAG 2 cut(s) 739, 950
BspDI ATCGAT 1 cut(s) 1465
BspEI TCCGGA 1 cut(s) 523
BspFNI CGCG 2 cut(s) 141, 1458
BspLI GGNNCC 3 cut(s) 73, 204, 1207
BspOI GCTAGC 1 cut(s) 672
BspPI GGATC 3 cut(s) 197, 210, 515
BspT104I TTCGAA 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 71
BsrI ACTGG 3 cut(s) 607, 1074, 1489
BssECI CCNNGG 4 cut(s) 31, 915, 1061, 1303
BssMI GATC 7 cut(s) 202, 520, 718, 1054, 1126, 1462, 1466
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 3 cut(s) 31, 915, 1303
Bst2UI CCWGG 3 cut(s) 434, 1014, 1063
Bst4CI ACNGT 3 cut(s) 199, 634, 1124
Bst6I CTCTTC 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 1031
BstBI TTCGAA 1 cut(s) 82
BstC8I GCNNGC 4 cut(s) 670, 966, 1184, 1364
BstDEI CTNAG 4 cut(s) 440, 747, 937, 1143
BstF5I GGATG 2 cut(s) 36, 1324
BstFNI CGCG 2 cut(s) 141, 1458
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 3 cut(s) 74, 141, 1458
BstKTI GATC 7 cut(s) 205, 523, 721, 1057, 1129, 1465, 1469
BstMAI GTCTC 3 cut(s) 219, 546, 623
BstMBI GATC 7 cut(s) 202, 520, 718, 1054, 1126, 1462, 1466
BstMWI GCNNNNNNNGC 4 cut(s) 188, 191, 344, 514
BstNI CCWGG 3 cut(s) 434, 1014, 1063
BstNSI RCATGY 2 cut(s) 782, 1366
BstSCI CCNGG 6 cut(s) 67, 432, 1012, 1061, 1231, 1366
BstUI CGCG 2 cut(s) 141, 1458
BstX2I RGATCY 2 cut(s) 202, 520
BstXI CCANNNNNNTGG 1 cut(s) 1013
BstYI RGATCY 2 cut(s) 202, 520
Bsu15I ATCGAT 1 cut(s) 1465
BsuRI GGCC 1 cut(s) 1073
BsuTUI ATCGAT 1 cut(s) 1465
BtsCI GGATG 2 cut(s) 36, 1324
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 3 cut(s) 112, 1081, 1129
Cac8I GCNNGC 4 cut(s) 670, 966, 1184, 1364
CaiI CAGNNNCTG 2 cut(s) 197, 1448
CfoI GCGC 3 cut(s) 74, 141, 1458
Cfr13I GGNCC 3 cut(s) 58, 1205, 1226
ClaI ATCGAT 1 cut(s) 1465
CseI GACGC 1 cut(s) 836
CspCI CAANNNNNGTGG 4 cut(s) 13, 48, 113, 148
CviAII CATG 3 cut(s) 779, 1363, 1417
DdeI CTNAG 4 cut(s) 440, 747, 937, 1143
DinI GGCGCC 1 cut(s) 73
DpnI GATC 7 cut(s) 204, 522, 720, 1056, 1128, 1464, 1468
DpnII GATC 7 cut(s) 202, 520, 718, 1054, 1126, 1462, 1466
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 3 cut(s) 31, 915, 1303
Eco47I GGWCC 3 cut(s) 58, 1205, 1226
Eco72I CACGTG 1 cut(s) 1031
EcoO109I RGGNCCY 2 cut(s) 58, 1205
EcoRI GAATTC 1 cut(s) 84
EcoRII CCWGG 3 cut(s) 432, 1012, 1061
EcoT14I CCWWGG 3 cut(s) 31, 915, 1303
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 3 cut(s) 31, 915, 1303
FaeI CATG 3 cut(s) 782, 1366, 1420
FalI AAGNNNNNCTT 8 cut(s) 717, 749, 825, 857, 861, 893, 1101, 1133
FaqI GGGAC 1 cut(s) 1191
FatI CATG 3 cut(s) 778, 1362, 1416
FauNDI CATATG 1 cut(s) 394
FbaI TGATCA 1 cut(s) 1126
FblI GTMKAC 1 cut(s) 1372
FokI GGATG 2 cut(s) 23, 1331
FspBI CTAG 5 cut(s) 252, 669, 752, 1040, 1424
GlaI GCGC 3 cut(s) 73, 140, 1457
GsaI CCCAGC 1 cut(s) 105
GsuI CTGGAG 1 cut(s) 647
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 1 cut(s) 1073
HapII CCGG 6 cut(s) 69, 524, 638, 1233, 1367, 1412
HgaI GACGC 1 cut(s) 836
HhaI GCGC 3 cut(s) 74, 141, 1458
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 3 cut(s) 782, 1366, 1420
Hin6I GCGC 3 cut(s) 72, 139, 1456
HinP1I GCGC 3 cut(s) 72, 139, 1456
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HinfI GANTC 6 cut(s) 8, 233, 275, 423, 710, 1374
HpaII CCGG 6 cut(s) 69, 524, 638, 1233, 1367, 1412
HphI GGTGA 3 cut(s) 90, 251, 1472
Hpy166II GTNNAC 5 cut(s) 643, 757, 1028, 1036, 1373
Hpy188I TCNGA 4 cut(s) 50, 274, 723, 1450
Hpy188III TCNNGA 9 cut(s) 176, 252, 360, 524, 584, 626, 939, 1118, 1494
Hpy8I GTNNAC 5 cut(s) 643, 757, 1028, 1036, 1373
HpyAV CCTTC 6 cut(s) 50, 142, 404, 957, 1055, 1063
HpyCH4III ACNGT 3 cut(s) 199, 634, 1124
HpyCH4IV ACGT 4 cut(s) 429, 1030, 1114, 1247
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 191, 344, 514
HpyF3I CTNAG 4 cut(s) 440, 747, 937, 1143
HpySE526I ACGT 4 cut(s) 429, 1030, 1114, 1247
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 3 cut(s) 782, 1366, 1420
HspAI GCGC 3 cut(s) 72, 139, 1456
KasI GGCGCC 1 cut(s) 71
Kpn2I TCCGGA 1 cut(s) 523
Ksp22I TGATCA 1 cut(s) 1126
Kzo9I GATC 7 cut(s) 202, 520, 718, 1054, 1126, 1462, 1466
LmnI GCTCC 7 cut(s) 16, 121, 505, 514, 568, 691, 874
LweI GCATC 8 cut(s) 45, 169, 178, 278, 918, 987, 1186, 1265
MaeI CTAG 5 cut(s) 252, 669, 752, 1040, 1424
MaeII ACGT 4 cut(s) 429, 1030, 1114, 1247
MaeIII GTNAC 1 cut(s) 388
MalI GATC 7 cut(s) 204, 522, 720, 1056, 1128, 1464, 1468
MboI GATC 7 cut(s) 202, 520, 718, 1054, 1126, 1462, 1466
MboII GAAGA 8 cut(s) 155, 158, 614, 621, 802, 911, 1049, 1091
MfeI CAATTG 2 cut(s) 695, 815
MflI RGATCY 2 cut(s) 202, 520
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 1 cut(s) 1368
MmeI TCCRAC 3 cut(s) 687, 1204, 1219
MroI TCCGGA 1 cut(s) 523
MroXI GAANNNNTTC 3 cut(s) 232, 312, 946
MseI TTAA 5 cut(s) 155, 1097, 1139, 1314, 1388
MspA1I CMGCKG 1 cut(s) 1156
MspI CCGG 6 cut(s) 69, 524, 638, 1233, 1367, 1412
MspR9I CCNGG 6 cut(s) 69, 434, 1014, 1063, 1233, 1368
MunI CAATTG 2 cut(s) 695, 815
Mva1269I GAATGC 2 cut(s) 322, 948
MvaI CCWGG 3 cut(s) 434, 1014, 1063
MvnI CGCG 2 cut(s) 141, 1458
MwoI GCNNNNNNNGC 4 cut(s) 188, 191, 344, 514
NarI GGCGCC 1 cut(s) 72
NciI CCSGG 3 cut(s) 69, 1233, 1368
NdeI CATATG 1 cut(s) 394
NdeII GATC 7 cut(s) 202, 520, 718, 1054, 1126, 1462, 1466
NheI GCTAGC 1 cut(s) 668
NlaIII CATG 3 cut(s) 782, 1366, 1420
NlaIV GGNNCC 3 cut(s) 73, 204, 1207
NspI RCATGY 2 cut(s) 782, 1366
NspV TTCGAA 1 cut(s) 82
PaeI GCATGC 1 cut(s) 1366
PciI ACATGT 1 cut(s) 778
PctI GAATGC 2 cut(s) 322, 948
PdmI GAANNNNTTC 3 cut(s) 232, 312, 946
PfeI GAWTC 5 cut(s) 8, 233, 275, 423, 710
PfoI TCCNGGA 1 cut(s) 432
PleI GAGTC 1 cut(s) 1368
PluTI GGCGCC 1 cut(s) 75
PmaCI CACGTG 1 cut(s) 1031
PmlI CACGTG 1 cut(s) 1031
PpsI GAGTC 1 cut(s) 1368
Ppu21I YACGTR 1 cut(s) 1031
PpuMI RGGWCCY 2 cut(s) 58, 1205
PscI ACATGT 1 cut(s) 778
Psp5II RGGWCCY 2 cut(s) 58, 1205
Psp6I CCWGG 3 cut(s) 432, 1012, 1061
PspCI CACGTG 1 cut(s) 1031
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 3 cut(s) 432, 1012, 1061
PspN4I GGNNCC 3 cut(s) 73, 204, 1207
PspPI GGNCC 3 cut(s) 58, 1205, 1226
PspPPI RGGWCCY 2 cut(s) 58, 1205
PsrI GAACNNNNNNTAC 2 cut(s) 445, 477
PstNI CAGNNNCTG 2 cut(s) 197, 1448
PsuI RGATCY 2 cut(s) 202, 520
SaqAI TTAA 5 cut(s) 155, 1097, 1139, 1314, 1388
Sau3AI GATC 7 cut(s) 202, 520, 718, 1054, 1126, 1462, 1466
Sau96I GGNCC 3 cut(s) 58, 1205, 1226
SchI GAGTC 1 cut(s) 1368
ScrFI CCNGG 6 cut(s) 69, 434, 1014, 1063, 1233, 1368
SfaNI GCATC 8 cut(s) 45, 169, 178, 278, 918, 987, 1186, 1265
SfoI GGCGCC 1 cut(s) 73
SfuI TTCGAA 1 cut(s) 82
SinI GGWCC 3 cut(s) 58, 1205, 1226
SmlI CTYRAG 3 cut(s) 216, 358, 584
SmoI CTYRAG 3 cut(s) 216, 358, 584
SphI GCATGC 1 cut(s) 1366
SsiI CCGC 4 cut(s) 5, 1156, 1229, 1458
SspDI GGCGCC 1 cut(s) 71
SspI AATATT 1 cut(s) 1473
SspMI CTAG 5 cut(s) 252, 669, 752, 1040, 1424
StyD4I CCNGG 6 cut(s) 67, 432, 1012, 1061, 1231, 1366
StyI CCWWGG 3 cut(s) 31, 915, 1303
TaaI ACNGT 3 cut(s) 199, 634, 1124
TaiI ACGT 4 cut(s) 432, 1033, 1117, 1250
TaqI TCGA 5 cut(s) 82, 175, 717, 1333, 1465
TfiI GAWTC 5 cut(s) 8, 233, 275, 423, 710
Tru1I TTAA 5 cut(s) 155, 1097, 1139, 1314, 1388
Tru9I TTAA 5 cut(s) 155, 1097, 1139, 1314, 1388
TscAI CASTG 3 cut(s) 112, 1081, 1129
TspDTI ATGAA 4 cut(s) 305, 912, 1101, 1443
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 3 cut(s) 112, 1081, 1129
VpaK11BI GGWCC 3 cut(s) 58, 1205, 1226
XapI RAATTY 3 cut(s) 84, 471, 1286
XbaI TCTAGA 1 cut(s) 251
XceI RCATGY 2 cut(s) 782, 1366
XmiI GTMKAC 1 cut(s) 1372
XmnI GAANNNNTTC 3 cut(s) 232, 312, 946
XspI CTAG 5 cut(s) 252, 669, 752, 1040, 1424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.