Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0012296

Physical Location & Seq

Genomic Coordinates Forward (+)

25173684 .. 25177181

Gene Structure 3498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCCTGCAGAGGGTGCTTGGGGTGCTTATTGAAGCTATTGAACTTTGTCTTGACCCTTGTGGGGCTGGCCATGGTGGGCTATGGGGTCTACTTGCTTGTGGAATACTTGAGAGCTGCGGACACAACTGTAATGTCTTCGCCTGTGGGCGACGTTCATGATTTGGTACAGCTGAGCCGGCCTATGCTCATGACTGTGTCTCTTTCAGATAATATCTTGGATAATTTGCCGAAAGCTTGGTTCATATACTTGTTTATTGGAATTGGAGCAATTATATTTGTCATCTCTTGTTTTGGTTGCGTGGGTGCTATGACACGGAATGGCTGCTGCTTGAGTTGTTATTCGGTCCTGGTGATCGATCTTTTGATCTTGGTAGAGCTGGGAGCTGCCGCTTTTATATTCTTTGACAAAAGCTGGGAAGATGAAATCCCAACGGATTCAAGTGGAGATTTTGAGATGATATATGCATTTCTGAAAGCTCATTGGAACATTGTGAGATGGGTTGCTCTTGGAGCTGTTGTCTTCGAGGCTCTACTTTTCTTGCTAGCTCTTGTGGTTAGGGCAGCGAATAGACCAGCAGAGTATGACAGTGATGATGAGCTCATTGCTCCAAGGCAACAAATTAGGCAGCCATTGATCAGCAACCGGCCAGCTGTTCCAGCAACTGGTGTACCTGTTGCTGGGGCTCTTGATCAGAGAGCACCAAACAGAAATGATGCTTGGAGTACACGCATGCGGGAAAAGTACGGACTTGATACAGCTGAGTTTACATATAACCCATCAGAGTCACACAGATTCCAGCAAGTTGCAGCTCAACCACAAGAAGAAAGGAGCCGATGCATTGTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0008150 GO:0009506 GO:0009705 GO:0012505 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0055044 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

284

Amino Acids

31.36

Weight (kDa)

5.02

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tetraspanin	PF00335	9 - 139	2.1e-14	Tetraspanin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32400 AT1G32400 AT1G32400
fragaria_vesca	FvH4_5g21300
malus_domestica	MD06G1039300.v1.1 MD16G1270100.v1.1
prunus_persica	Prupe.5G044200_v2.0.a1 Prupe.5G044200_v2.0.a1 Prupe.5G044200_v2.0.a1
pyrus_communis	pycom06g03290 pycom16g23920
rosa_chinensis	RchiOBHm_Chr7g0208641
rosa_laevigata	RLG00000003206
rosa_roxburghii	Rroxscaffold_3G00250360
rosa_rugosa	Rorug07G0105100
rosa_samantha	Rh7AG240000 Rh7CG254800 Rh7DG245900
rosa_wichuraiana	Rw7G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	665
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	3 cut(s)	119, 390, 736
AcoI	YGGCCR	2 cut(s)	69, 647
AfaI	GTAC	4 cut(s)	168, 672, 727, 746
AfiI	CCNNNNNNNGG	4 cut(s)	12, 63, 665, 680
AgsI	TTSAA	3 cut(s)	34, 43, 441
AjnI	CCWGG	1 cut(s)	348
AjuI	GAANNNNNNNTTGG	2 cut(s)	703, 735
Alw21I	GWGCWC	2 cut(s)	603, 703
Alw26I	GTCTC	1 cut(s)	204
AlwNI	CAGNNNCTG	1 cut(s)	665
AoxI	GGCC	4 cut(s)	3, 69, 179, 647
ApeKI	GCWGC	7 cut(s)	116, 324, 327, 386, 563, 628, 809
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	364
AsuNHI	GCTAGC	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	346
BaeI	ACNNNNGTAYC	2 cut(s)	654, 687
BalI	TGGCCA	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	603, 688
BbsI	GAAGAC	2 cut(s)	129, 514
Bbv12I	GWGCWC	2 cut(s)	603, 703
BbvI	GCAGC	7 cut(s)	103, 311, 314, 373, 575, 640, 821
BccI	CCATC	2 cut(s)	492, 787
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	2 cut(s)	636, 691
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	7
BisI	GCNGC	8 cut(s)	117, 325, 328, 387, 390, 564, 629, 810
BlpI	GCTNAGC	1 cut(s)	173
BlsI	GCNGC	8 cut(s)	118, 326, 329, 388, 391, 565, 630, 811
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	833
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	706, 827
BmtI	GCTAGC	1 cut(s)	548
BpiI	GAAGAC	2 cut(s)	129, 514
Bpu1102I	GCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	130, 352
Bsa29I	ATCGAT	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	72, 611
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 63, 665, 680
Bse118I	RCCGGY	2 cut(s)	177, 645
Bse1I	ACTGG	1 cut(s)	670
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	350
BseCI	ATCGAT	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	72, 611
BseLI	CCNNNNNNNGG	4 cut(s)	12, 63, 665, 680
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	2 cut(s)	164, 753
BseNI	ACTGG	1 cut(s)	670
BseXI	GCAGC	7 cut(s)	103, 311, 314, 373, 575, 640, 821
BseYI	CCCAGC	3 cut(s)	379, 414, 680
BshFI	GGCC	4 cut(s)	5, 71, 181, 649
BshVI	ATCGAT	1 cut(s)	357
BsiHKAI	GWGCWC	2 cut(s)	603, 703
BsiSI	CCGG	2 cut(s)	178, 646
BslI	CCNNNNNNNGG	4 cut(s)	12, 63, 665, 680
BsmAI	GTCTC	1 cut(s)	204
BsnI	GGCC	4 cut(s)	5, 71, 181, 649
Bsp1286I	GDGCHC	3 cut(s)	603, 688, 703
Bsp143I	GATC	5 cut(s)	354, 358, 366, 636, 691
Bsp1720I	GCTNAGC	1 cut(s)	173
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	3 cut(s)	119, 390, 736
BspANI	GGCC	4 cut(s)	5, 71, 181, 649
BspCNI	CTCAG	2 cut(s)	165, 754
BspDI	ATCGAT	1 cut(s)	357
BspHI	TCATGA	2 cut(s)	157, 189
BspLI	GGNNCC	1 cut(s)	833
BspMAI	CTGCAG	1 cut(s)	11
BspOI	GCTAGC	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	603
BsrFI	RCCGGY	2 cut(s)	177, 645
BsrI	ACTGG	1 cut(s)	670
BssAI	RCCGGY	2 cut(s)	177, 645
BssECI	CCNNGG	2 cut(s)	72, 611
BssMI	GATC	5 cut(s)	354, 358, 366, 636, 691
BssT1I	CCWWGG	2 cut(s)	72, 611
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	3 cut(s)	130, 196, 590
BstAPI	GCANNNNNTGC	1 cut(s)	15
BstC8I	GCNNGC	6 cut(s)	7, 69, 179, 546, 651, 734
BstDEI	CTNAG	2 cut(s)	173, 762
BstDSI	CCRYGG	1 cut(s)	72
BstKTI	GATC	5 cut(s)	357, 361, 369, 639, 694
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	5 cut(s)	354, 358, 366, 636, 691
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 24, 178, 512, 659
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	7
BstV1I	GCAGC	7 cut(s)	103, 311, 314, 373, 575, 640, 821
BstV2I	GAAGAC	2 cut(s)	129, 514
Bsu15I	ATCGAT	1 cut(s)	357
BsuRI	GGCC	4 cut(s)	5, 71, 181, 649
BsuTUI	ATCGAT	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	595
Cac8I	GCNNGC	6 cut(s)	7, 69, 179, 546, 651, 734
CaiI	CAGNNNCTG	1 cut(s)	665
CciI	TCATGA	2 cut(s)	157, 189
Cfr10I	RCCGGY	2 cut(s)	177, 645
Cfr13I	GGNCC	1 cut(s)	346
ClaI	ATCGAT	1 cut(s)	357
Csp6I	GTAC	4 cut(s)	167, 671, 726, 745
CviAII	CATG	5 cut(s)	73, 158, 190, 733, 847
CviQI	GTAC	4 cut(s)	167, 671, 726, 745
DdeI	CTNAG	2 cut(s)	173, 762
DpnI	GATC	5 cut(s)	356, 360, 368, 638, 693
DpnII	GATC	5 cut(s)	354, 358, 366, 636, 691
EaeI	YGGCCR	2 cut(s)	69, 647
Ecl136II	GAGCTC	1 cut(s)	601
Eco130I	CCWWGG	2 cut(s)	72, 611
Eco24I	GRGCYC	2 cut(s)	603, 688
Eco47I	GGWCC	1 cut(s)	346
Eco53kI	GAGCTC	1 cut(s)	601
EcoICRI	GAGCTC	1 cut(s)	601
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	72, 611
EcoT22I	ATGCAT	2 cut(s)	469, 842
EcoT38I	GRGCYC	2 cut(s)	603, 688
ErhI	CCWWGG	2 cut(s)	72, 611
FaeI	CATG	5 cut(s)	76, 161, 193, 736, 850
FatI	CATG	5 cut(s)	72, 157, 189, 732, 846
FauI	CCCGC	1 cut(s)	729
FbaI	TGATCA	2 cut(s)	636, 691
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	8 cut(s)	117, 325, 328, 387, 390, 564, 629, 810
FriOI	GRGCYC	2 cut(s)	603, 688
Fsp4HI	GCNGC	8 cut(s)	117, 325, 328, 387, 390, 564, 629, 810
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	8 cut(s)	117, 325, 328, 387, 390, 564, 629, 810
GsaI	CCCAGC	3 cut(s)	383, 418, 684
HaeIII	GGCC	4 cut(s)	5, 71, 181, 649
HapII	CCGG	2 cut(s)	178, 646
Hin1II	CATG	5 cut(s)	76, 161, 193, 736, 850
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	3 cut(s)	437, 785, 795
HpaII	CCGG	2 cut(s)	178, 646
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	4 cut(s)	91, 671, 728, 768
Hpy188I	TCNGA	4 cut(s)	208, 474, 696, 784
Hpy188III	TCNNGA	4 cut(s)	52, 158, 190, 689
Hpy8I	GTNNAC	4 cut(s)	91, 671, 728, 768
Hpy99I	CGWCG	1 cut(s)	155
HpyCH4III	ACNGT	3 cut(s)	130, 196, 590
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	4 cut(s)	9, 467, 809, 840
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 24, 178, 512, 659
HpyF3I	CTNAG	2 cut(s)	173, 762
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	5 cut(s)	76, 161, 193, 736, 850
KroI	GCCGGC	1 cut(s)	177
KroNI	GCCGGC	1 cut(s)	179
Ksp22I	TGATCA	2 cut(s)	636, 691
Kzo9I	GATC	5 cut(s)	354, 358, 366, 636, 691
LmnI	GCTCC	5 cut(s)	266, 383, 512, 613, 831
Lsp1109I	GCAGC	7 cut(s)	103, 311, 314, 373, 575, 640, 821
LweI	GCATC	2 cut(s)	706, 827
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	786
MalI	GATC	5 cut(s)	356, 360, 368, 638, 693
MboI	GATC	5 cut(s)	354, 358, 366, 636, 691
MboII	GAAGA	4 cut(s)	129, 431, 514, 836
MhlI	GDGCHC	3 cut(s)	603, 688, 703
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	4 cut(s)	223, 261, 270, 621
MluNI	TGGCCA	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	794
MnlI	CCTC	2 cut(s)	5, 520
Mox20I	TGGCCA	1 cut(s)	71
Mph1103I	ATGCAT	2 cut(s)	469, 842
MroNI	GCCGGC	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	71
MslI	CAYNNNNRTG	2 cut(s)	194, 845
Msp20I	TGGCCA	1 cut(s)	71
MspA1I	CMGCKG	3 cut(s)	172, 653, 761
MspI	CCGG	2 cut(s)	178, 646
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	5 cut(s)	15, 24, 178, 512, 659
NaeI	GCCGGC	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	5 cut(s)	354, 358, 366, 636, 691
NgoMIV	GCCGGC	1 cut(s)	177
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	5 cut(s)	76, 161, 193, 736, 850
NlaIV	GGNNCC	1 cut(s)	833
NmuCI	GTSAC	1 cut(s)	786
NsiI	ATGCAT	2 cut(s)	469, 842
NspI	RCATGY	1 cut(s)	736
PaeI	GCATGC	1 cut(s)	736
PagI	TCATGA	2 cut(s)	157, 189
PdiI	GCCGGC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	437, 795
PflFI	GACNNNGTC	1 cut(s)	196
PflMI	CCANNNNNTGG	1 cut(s)	665
PkrI	GCNGC	8 cut(s)	118, 326, 329, 388, 391, 565, 630, 811
PleI	GAGTC	1 cut(s)	793
PpsI	GAGTC	1 cut(s)	793
Psp124BI	GAGCTC	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	348
PspFI	CCCAGC	3 cut(s)	379, 414, 680
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	833
PspPI	GGNCC	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	11
PstNI	CAGNNNCTG	1 cut(s)	665
PsyI	GACNNNGTC	1 cut(s)	196
PvuII	CAGCTG	3 cut(s)	172, 653, 761
RsaI	GTAC	4 cut(s)	168, 672, 727, 746
RsaNI	GTAC	4 cut(s)	167, 671, 726, 745
RseI	CAYNNNNRTG	2 cut(s)	194, 845
SacI	GAGCTC	1 cut(s)	603
SatI	GCNGC	8 cut(s)	117, 325, 328, 387, 390, 564, 629, 810
Sau3AI	GATC	5 cut(s)	354, 358, 366, 636, 691
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	794
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	3 cut(s)	603, 688, 703
SfaNI	GCATC	2 cut(s)	706, 827
SfcI	CTRYAG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	2 cut(s)	194, 845
SmlI	CTYRAG	2 cut(s)	109, 331
SmoI	CTYRAG	2 cut(s)	109, 331
SphI	GCATGC	1 cut(s)	736
Sse9I	AATT	4 cut(s)	223, 261, 270, 621
SsiI	CCGC	3 cut(s)	119, 390, 736
SspMI	CTAG	1 cut(s)	545
SstI	GAGCTC	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	72, 611
TaaI	ACNGT	3 cut(s)	130, 196, 590
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	2 cut(s)	357, 525
TaqII	GACCGA	1 cut(s)	334
TasI	AATT	4 cut(s)	223, 261, 270, 621
TatI	WGTACW	1 cut(s)	725
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	2 cut(s)	437, 795
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	786
TseI	GCWGC	7 cut(s)	116, 324, 327, 386, 563, 628, 809
Tsp45I	GTSAC	1 cut(s)	786
TspDTI	ATGAA	3 cut(s)	146, 232, 438
TspGWI	ACGGA	3 cut(s)	331, 449, 762
TspRI	CASTG	1 cut(s)	595
Tth111I	GACNNNGTC	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	346
XceI	RCATGY	1 cut(s)	736
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	545
Zsp2I	ATGCAT	2 cut(s)	469, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.