pycom16g26090

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0009563
Physical Location & Seq
Reverse (-)
28349186 .. 28352047
2862 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1146 bp
ATGATCTTATCTCCTGTCTTCATGTACCATGGTATAACCACAGGACCAGCTCCTGTCAAGGGTGAAACAGTGGCCAAATTGAAGGTGGCAATCAATGGATTTGGACGCATTGGCAGGAACTTCCTCCGATGCTGGCATGGCCGCAGGGACTCACCCCTAGAAGTCATTGTTGTTAATGACAGCGGTGGTGTCAAGAACGCTTCGCACTTGCTGAAATATGACTCAATGCTGGGTACTTTCAAAGCAGACGTGAAAATCGTGGACAATGAGACCATCAGTGTTGATGGCAAGCCCGTCAAGGTTGTCTCTAACAGAGATCCCCTGAAGCTTCCATGGACTGAGATGGGCATTGACATTGTTATCGAGGGAACAGGAGTCTTTGTCGATGGCCCTGGTGCCGGCAAACATATCCAAGCAGGTGCCAAGAAAGTCATCATTACAGCTCCAGCAAAAGGTGCTGACATTCCTACCTATGTTGTGGGGCTGAATGAAAAAGACTATGACCACAACGTTGCCAACATTGTAAGCAACGCTTCTTGCACAACAAACTGCCTGGCTCCTTTCGTAAAGGTCCTGGATGAAGAATTTGGTAAGGCGTCATTTAGGCTTTTGGATGCTTCTCATCGGGACTTAAGGAGAGCTAGAGCGGCAGCGCTAAACATAGTCCCTACAAGCACTGGTGCAGCAAAGGCTGTGTCCCTTGTGCTGCCTCAACTCAAGGGCAAGCTCAACGGCATTGCCCTCCGTGTGCCAACACTTAATGTATCCGTGGTTGACCTTGTGATCAACGTTGCAAAGAAGGGTATTTCAGCAGAAGATGTCAATGCAGCCTTCAGAAAGGCAGCGGACGGACCACTTAAGGGAATATTGGCAGTGTGCGACATTCCTCTTGTGTCTGTGGACTTCAGGTGCACGGATGTTTCCTCCACCATAGACTCCTCCTTGATCATGGTCATGGGTGATGATATGGTCAAGGTGGTGGCCTGGTACGACAACGAATGGGGATACAGTCAAAGGGTTGTGGATTTGGCACATTTGGTGGCAAGCAAGTGGCCAGGCACGGCACAAGCGGGAAGCGGAGACCCATTGGAGGATTTCTGCAAGACAAACCCGGCTGACGAGGAGTGCAAAGTCTATGAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200
Pfam Domains
Protein Families
CP12 Gp_dh_C Gp_dh_N

Protein Analysis

382

Amino Acids

40.71

Weight (kDa)

7.04

Isoelectric Point (pI)

27.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 28 - 129 3.1e-31 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 202 - 330 1.7e-47 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 407
Acc36I ACCTGC 1 cut(s) 407
AccB1I GGYRCC 2 cut(s) 395, 419
AccBSI CCGCTC 1 cut(s) 647
AciI CCGC 6 cut(s) 142, 183, 647, 845, 1070, 1077
AclI AACGTT 2 cut(s) 510, 789
AclWI GGATC 1 cut(s) 311
AcoI YGGCCR 3 cut(s) 72, 139, 1052
AcsI RAATTY 1 cut(s) 584
AcuI CTGAAG 3 cut(s) 344, 817, 889
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 3 cut(s) 26, 235, 989
AfeI AGCGCT 1 cut(s) 654
AfiI CCNNNNNNNGG 5 cut(s) 59, 398, 452, 860, 1090
AflII CTTAAG 2 cut(s) 631, 857
AgsI TTSAA 2 cut(s) 82, 241
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 5 cut(s) 391, 552, 573, 983, 1054
AluBI AGCT 5 cut(s) 50, 328, 443, 641, 727
AluI AGCT 5 cut(s) 50, 328, 443, 641, 727
Alw21I GWGCWC 1 cut(s) 914
Alw26I GTCTC 3 cut(s) 263, 310, 1074
Alw44I GTGCAC 1 cut(s) 910
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 53
Aor51HI AGCGCT 1 cut(s) 654
AoxI GGCC 5 cut(s) 72, 139, 388, 981, 1052
ApaLI GTGCAC 1 cut(s) 910
ApeKI GCWGC 5 cut(s) 650, 683, 706, 827, 842
ApoI RAATTY 1 cut(s) 584
ArsI GACNNNNNNTTYG 2 cut(s) 680, 712
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 4 cut(s) 44, 389, 571, 851
AsuC2I CCSGG 1 cut(s) 1112
AsuHPI GGTGA 3 cut(s) 74, 144, 971
AvaII GGWCC 3 cut(s) 44, 571, 851
BaeGI GKGCMC 1 cut(s) 914
BalI TGGCCA 2 cut(s) 74, 1054
BanI GGYRCC 2 cut(s) 395, 419
BbsI GAAGAC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 914
BbvI GCAGC 5 cut(s) 662, 693, 695, 839, 854
BccI CCATC 4 cut(s) 278, 281, 337, 380
BceAI ACGGC 2 cut(s) 748, 1077
BciT130I CCWGG 5 cut(s) 393, 554, 575, 985, 1056
BciVI GTATCC 2 cut(s) 775, 998
BclI TGATCA 2 cut(s) 783, 945
BcnI CCSGG 1 cut(s) 1112
BcoDI GTCTC 3 cut(s) 263, 310, 1074
BfaI CTAG 2 cut(s) 158, 642
BfoI RGCGCY 1 cut(s) 656
BfrI CTTAAG 2 cut(s) 631, 857
BfuAI ACCTGC 1 cut(s) 407
BfuI GTATCC 2 cut(s) 775, 998
BisI GCNGC 7 cut(s) 142, 648, 651, 684, 707, 828, 843
BlsI GCNGC 7 cut(s) 143, 649, 652, 685, 708, 829, 844
Bme1390I CCNGG 6 cut(s) 393, 554, 575, 985, 1056, 1112
Bme18I GGWCC 3 cut(s) 44, 571, 851
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 4 cut(s) 44, 389, 571, 851
BmiI GGNNCC 3 cut(s) 397, 421, 558
BmrFI CCNGG 6 cut(s) 393, 554, 575, 985, 1056, 1112
BmsI GCATC 2 cut(s) 119, 604
BpiI GAAGAC 1 cut(s) 10
BpmI CTGGAG 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 701
BpuMI CCSGG 1 cut(s) 1112
BsaHI GRCGYC 1 cut(s) 596
BsaI GGTCTC 2 cut(s) 263, 1074
BsaJI CCNNGG 4 cut(s) 28, 332, 391, 768
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 398, 452, 860, 1090
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 682
Bse3DI GCAATG 1 cut(s) 735
BseBI CCWGG 5 cut(s) 393, 554, 575, 985, 1056
BseDI CCNNGG 4 cut(s) 28, 332, 391, 768
BseGI GGATG 3 cut(s) 583, 619, 922
BseLI CCNNNNNNNGG 5 cut(s) 59, 398, 452, 860, 1090
BseMI GCAATG 1 cut(s) 735
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 682
BseRI GAGGAG 2 cut(s) 928, 1136
BseSI GKGCMC 1 cut(s) 914
BseXI GCAGC 5 cut(s) 662, 693, 695, 839, 854
BseYI CCCAGC 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 702
BshFI GGCC 5 cut(s) 74, 141, 390, 983, 1054
BshNI GGYRCC 2 cut(s) 395, 419
BsiHKAI GWGCWC 1 cut(s) 914
BsiSI CCGG 2 cut(s) 399, 1112
BslFI GGGAC 4 cut(s) 161, 641, 650, 682
BslI CCNNNNNNNGG 5 cut(s) 59, 398, 452, 860, 1090
BsmAI GTCTC 3 cut(s) 263, 310, 1074
BsmFI GGGAC 4 cut(s) 161, 641, 650, 682
BsnI GGCC 5 cut(s) 74, 141, 390, 983, 1054
Bso31I GGTCTC 2 cut(s) 263, 1074
Bsp1286I GDGCHC 1 cut(s) 914
Bsp143I GATC 4 cut(s) 3, 316, 783, 945
Bsp19I CCATGG 2 cut(s) 28, 332
BspACI CCGC 6 cut(s) 142, 183, 647, 845, 1070, 1077
BspANI GGCC 5 cut(s) 74, 141, 390, 983, 1054
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 3 cut(s) 397, 421, 558
BspMI ACCTGC 1 cut(s) 407
BspPI GGATC 1 cut(s) 311
BspT107I GGYRCC 2 cut(s) 395, 419
BspTI CTTAAG 2 cut(s) 631, 857
BspTNI GGTCTC 2 cut(s) 263, 1074
BsrBI CCGCTC 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 735
BsrFI RCCGGY 1 cut(s) 398
BsrI ACTGG 1 cut(s) 682
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 4 cut(s) 28, 332, 391, 768
BssMI GATC 4 cut(s) 3, 316, 783, 945
BssNI GRCGYC 1 cut(s) 596
BssT1I CCWWGG 2 cut(s) 28, 332
Bst2UI CCWGG 5 cut(s) 393, 554, 575, 985, 1056
Bst4CI ACNGT 2 cut(s) 70, 1010
BstACI GRCGYC 1 cut(s) 596
BstAFI CTTAAG 2 cut(s) 631, 857
BstAPI GCANNNNNTGC 1 cut(s) 455
BstC8I GCNNGC 5 cut(s) 134, 290, 400, 725, 1045
BstDEI CTNAG 1 cut(s) 339
BstDSI CCRYGG 3 cut(s) 28, 332, 768
BstF5I GGATG 3 cut(s) 583, 619, 922
BstH2I RGCGCY 1 cut(s) 656
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 4 cut(s) 6, 319, 786, 948
BstMAI GTCTC 3 cut(s) 263, 310, 1074
BstMBI GATC 4 cut(s) 3, 316, 783, 945
BstMWI GCNNNNNNNGC 4 cut(s) 138, 455, 647, 689
BstNI CCWGG 5 cut(s) 393, 554, 575, 985, 1056
BstSCI CCNGG 6 cut(s) 391, 552, 573, 983, 1054, 1110
BstSLI GKGCMC 1 cut(s) 914
BstV1I GCAGC 5 cut(s) 662, 693, 695, 839, 854
BstV2I GAAGAC 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuI GTATCC 2 cut(s) 775, 998
BsuRI GGCC 5 cut(s) 74, 141, 390, 983, 1054
BtgI CCRYGG 3 cut(s) 28, 332, 768
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 3 cut(s) 583, 619, 922
BtsI GCAGTG 1 cut(s) 879
BtsIMutI CAGTG 4 cut(s) 75, 283, 675, 879
BveI ACCTGC 1 cut(s) 407
Cac8I GCNNGC 5 cut(s) 134, 290, 400, 725, 1045
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 1 cut(s) 655
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 4 cut(s) 44, 389, 571, 851
CseI GACGC 2 cut(s) 114, 585
Csp6I GTAC 3 cut(s) 25, 234, 988
CviAII CATG 6 cut(s) 22, 29, 137, 333, 949, 955
CviQI GTAC 3 cut(s) 25, 234, 988
DdeI CTNAG 1 cut(s) 339
DpnI GATC 4 cut(s) 5, 318, 785, 947
DpnII GATC 4 cut(s) 3, 316, 783, 945
EaeI YGGCCR 3 cut(s) 72, 139, 1052
Eco130I CCWWGG 2 cut(s) 28, 332
Eco31I GGTCTC 2 cut(s) 263, 1074
Eco47I GGWCC 3 cut(s) 44, 571, 851
Eco47III AGCGCT 1 cut(s) 654
Eco57I CTGAAG 3 cut(s) 344, 817, 889
EcoO109I RGGNCCY 1 cut(s) 571
EcoRII CCWGG 5 cut(s) 391, 552, 573, 983, 1054
EcoT14I CCWWGG 2 cut(s) 28, 332
ErhI CCWWGG 2 cut(s) 28, 332
FaeI CATG 6 cut(s) 25, 32, 140, 336, 952, 958
FalI AAGNNNNNCTT 2 cut(s) 517, 549
FaqI GGGAC 4 cut(s) 161, 641, 650, 682
FatI CATG 6 cut(s) 21, 28, 136, 332, 948, 954
FauI CCCGC 1 cut(s) 1063
FbaI TGATCA 2 cut(s) 783, 945
Fnu4HI GCNGC 7 cut(s) 142, 648, 651, 684, 707, 828, 843
FokI GGATG 3 cut(s) 590, 626, 929
Fsp4HI GCNGC 7 cut(s) 142, 648, 651, 684, 707, 828, 843
FspBI CTAG 2 cut(s) 158, 642
GlaI GCGC 1 cut(s) 654
GluI GCNGC 7 cut(s) 142, 648, 651, 684, 707, 828, 843
GsaI CCCAGC 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 429
HaeII RGCGCY 1 cut(s) 656
HaeIII GGCC 5 cut(s) 74, 141, 390, 983, 1054
HapII CCGG 2 cut(s) 399, 1112
HgaI GACGC 2 cut(s) 114, 585
HhaI GCGC 1 cut(s) 655
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 6 cut(s) 25, 32, 140, 336, 952, 958
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 4 cut(s) 149, 221, 375, 935
HpaII CCGG 2 cut(s) 399, 1112
HphI GGTGA 3 cut(s) 74, 144, 971
Hpy166II GTNNAC 4 cut(s) 262, 775, 901, 912
Hpy188I TCNGA 2 cut(s) 128, 836
Hpy188III TCNNGA 2 cut(s) 193, 626
Hpy8I GTNNAC 4 cut(s) 262, 775, 901, 912
HpyAV CCTTC 3 cut(s) 76, 793, 841
HpyCH4III ACNGT 2 cut(s) 70, 1010
HpyCH4IV ACGT 3 cut(s) 249, 510, 789
HpyCH4V TGCA 7 cut(s) 540, 683, 794, 827, 912, 1101, 1128
HpyF10VI GCNNNNNNNGC 4 cut(s) 138, 455, 647, 689
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 3 cut(s) 249, 510, 789
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 6 cut(s) 25, 32, 140, 336, 952, 958
HspAI GCGC 1 cut(s) 653
KroI GCCGGC 1 cut(s) 398
KroNI GCCGGC 1 cut(s) 400
Ksp22I TGATCA 2 cut(s) 783, 945
Kzo9I GATC 4 cut(s) 3, 316, 783, 945
LmnI GCTCC 3 cut(s) 55, 448, 562
Lsp1109I GCAGC 5 cut(s) 662, 693, 695, 839, 854
LweI GCATC 2 cut(s) 119, 604
MaeI CTAG 2 cut(s) 158, 642
MaeII ACGT 3 cut(s) 249, 510, 789
MalI GATC 4 cut(s) 5, 318, 785, 947
MbiI CCGCTC 1 cut(s) 647
MboI GATC 4 cut(s) 3, 316, 783, 945
MboII GAAGA 3 cut(s) 10, 593, 827
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 914
MlsI TGGCCA 2 cut(s) 74, 1054
MluCI AATT 2 cut(s) 77, 584
MluNI TGGCCA 2 cut(s) 74, 1054
MlyI GAGTC 4 cut(s) 143, 215, 384, 929
MnlI CCTC 9 cut(s) 134, 358, 720, 752, 897, 934, 949, 1084, 1114
Mox20I TGGCCA 2 cut(s) 74, 1054
MroNI GCCGGC 1 cut(s) 398
MscI TGGCCA 2 cut(s) 74, 1054
MseI TTAA 4 cut(s) 174, 632, 759, 858
MslI CAYNNNNRTG 1 cut(s) 953
Msp20I TGGCCA 2 cut(s) 74, 1054
MspA1I CMGCKG 2 cut(s) 183, 845
MspCI CTTAAG 2 cut(s) 631, 857
MspI CCGG 2 cut(s) 399, 1112
MspR9I CCNGG 6 cut(s) 393, 554, 575, 985, 1056, 1112
MvaI CCWGG 5 cut(s) 393, 554, 575, 985, 1056
MwoI GCNNNNNNNGC 4 cut(s) 138, 455, 647, 689
NaeI GCCGGC 1 cut(s) 400
NciI CCSGG 1 cut(s) 1112
NcoI CCATGG 2 cut(s) 28, 332
NdeII GATC 4 cut(s) 3, 316, 783, 945
NgoMIV GCCGGC 1 cut(s) 398
NlaIII CATG 6 cut(s) 25, 32, 140, 336, 952, 958
NlaIV GGNNCC 3 cut(s) 397, 421, 558
PaqCI CACCTGC 1 cut(s) 407
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PdiI GCCGGC 1 cut(s) 400
PfoI TCCNGGA 1 cut(s) 573
PkrI GCNGC 7 cut(s) 143, 649, 652, 685, 708, 829, 844
PleI GAGTC 4 cut(s) 143, 215, 383, 929
PpsI GAGTC 4 cut(s) 143, 215, 383, 929
PpuMI RGGWCCY 1 cut(s) 571
Psp1406I AACGTT 2 cut(s) 510, 789
Psp5II RGGWCCY 1 cut(s) 571
Psp6I CCWGG 5 cut(s) 391, 552, 573, 983, 1054
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 5 cut(s) 391, 552, 573, 983, 1054
PspN4I GGNNCC 3 cut(s) 397, 421, 558
PspPI GGNCC 4 cut(s) 44, 389, 571, 851
PspPPI RGGWCCY 1 cut(s) 571
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 3 cut(s) 26, 235, 989
RsaNI GTAC 3 cut(s) 25, 234, 988
RseI CAYNNNNRTG 1 cut(s) 953
SaqAI TTAA 4 cut(s) 174, 632, 759, 858
SatI GCNGC 7 cut(s) 142, 648, 651, 684, 707, 828, 843
Sau3AI GATC 4 cut(s) 3, 316, 783, 945
Sau96I GGNCC 4 cut(s) 44, 389, 571, 851
SchI GAGTC 4 cut(s) 143, 215, 384, 929
ScrFI CCNGG 6 cut(s) 393, 554, 575, 985, 1056, 1112
SduI GDGCHC 1 cut(s) 914
SfaNI GCATC 2 cut(s) 119, 604
SinI GGWCC 3 cut(s) 44, 571, 851
SmiMI CAYNNNNRTG 1 cut(s) 953
SmlI CTYRAG 3 cut(s) 631, 716, 857
SmoI CTYRAG 3 cut(s) 631, 716, 857
Sse9I AATT 2 cut(s) 77, 584
SsiI CCGC 6 cut(s) 142, 183, 647, 845, 1070, 1077
SspI AATATT 1 cut(s) 867
SspMI CTAG 2 cut(s) 158, 642
StyD4I CCNGG 6 cut(s) 391, 552, 573, 983, 1054, 1110
StyI CCWWGG 2 cut(s) 28, 332
TaaI ACNGT 2 cut(s) 70, 1010
TaiI ACGT 3 cut(s) 252, 513, 792
TaqI TCGA 2 cut(s) 363, 384
TasI AATT 2 cut(s) 77, 584
TauI GCSGC 2 cut(s) 144, 650
Tru1I TTAA 4 cut(s) 174, 632, 759, 858
Tru9I TTAA 4 cut(s) 174, 632, 759, 858
TscAI CASTG 4 cut(s) 75, 283, 682, 879
TseI GCWGC 5 cut(s) 650, 683, 706, 827, 842
TspDTI ATGAA 3 cut(s) 10, 504, 594
TspGWI ACGGA 4 cut(s) 734, 757, 864, 929
TspRI CASTG 4 cut(s) 75, 283, 682, 879
Vha464I CTTAAG 2 cut(s) 631, 857
VneI GTGCAC 1 cut(s) 910
VpaK11BI GGWCC 3 cut(s) 44, 571, 851
XapI RAATTY 1 cut(s) 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XspI CTAG 2 cut(s) 158, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.