pycom16g26420

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT5G52430.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012074
Physical Location & Seq
Forward (+)
28930230 .. 28933008
2779 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1365 bp
ATGGGCTCCGAGCAGAATAGATTCCCTCAGCAGGAGCGGAGAAAGAGATGGGGAGGATGTTGGGGTGCATTCTCTTGCTTTCCCTCACAAAAAGGAGGAAAGCGCATAGTGCCTGCAACTCGCATTCCTGAAGGCAATGCATCAGCAAATCAGCCAAATGGACCCCAAACAGTTGGGCTTGCCAACCAAACAACATCGCTAGCTCCTTCTCTTCTAGCTCCGCCTTCTTCTCCAGCATCATTTACAAATTCAGCCCTTCCTTCAACAGCGCAGTCTCCTAGTTGTTTCTTGTCTGCCAACTCACCTGGAGGTCCTTCATCCACCATGTATGCCACCGGGCCATATGCCAACGAAACACAACTTGTCTCTCCTCCTGTTTTCTCAACCTTCACAACTGAGCCGTCCACTGCCCCTCTCACTCCCCCACCAGAGTTGGCTCACTTAACTACTCCATCTTCCCCAGATGTACCGTACGCTCATTTCCTCTCATCTTCAGTAGACCTTAAAAGTACTGAGAAGACCAATTACATTGCTGCAAATGATCTTCATTCAACATATTCCCTCTATCCTGGAAGTCCTGCTAGTAGTCTCAGATTACCAATTTCAAGGGCATCAAACAATTGCTCATCGTCATCTTTTCCTGAGCGTGATTTCCCCTCACATTGGGATCCATCAGCTTCTCCCCAAAATGGCACCTATCCAAGGCGTGGTTCTGCAAGGATGTTTGGACATGACCCAGTTGGAGCCTCTGTGTCATCTCAAGACTCAAATTTCTTTTGTCCTGCTACATTTGCACAGTTTTATCTGGATAATCCACCATTACCTCATGCTGCTGGAAGGTTAAGTGTGTCCAAGGATTCAGATGTTTACACTACTGGTGGGAATGGAAGTCAGAGCAGACACAGTAGAAGCCCCAAGCAAGATGTGGAAGAAATAGAAGCGTATAGAGCATCCTTTGGGTTTAGTGCTGATGAAATTATCACCACAACACAATATGTGGAGATTTCTGATGTAATGGAGGACTCGTTTACCATGACACCTTTCCCCTCGCATAAATTGCCTTCCGAAGAAAGTATGGAACCGACATCTGTCAATGAAGGACTAAAAGGACATAAGACAAAAACAAACTTGCAGAGTCAGGATAGTCTTAAATCAGAACCAGATCTTGATGACGGTGGACATTGTGACTTGGCCATATCGTGTACTGGATCTGAAGATCACAAATCATGGAGGCAGTCTAGTGACGTCTCTCGATCAGGTACACGTGGAATTCGTATTATGCAGAAATTGATTATAGAAGGGGGAGAAGCTTACGGGAGAGAAAATGAGAATTTGCGTGGAATGACTAAGAGTGGAATGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

455

Amino Acids

48.75

Weight (kDa)

5.8

Isoelectric Point (pI)

72.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76660 AT1G76660
fragaria_vesca FvH4_5g26800 FvH4_5g26800 FvH4_5g26800
malus_domestica MD00G1147000.v1.1 MD16G1282800.v1.1
prunus_persica Prupe.5G000400_v2.0.a1
pyrus_communis pycom16g26420
rosa_chinensis RchiOBHm_Chr7g0217711
rosa_laevigata RLG00000002445
rosa_multiflora Rmu_sc0000202.1_g000008
rosa_roxburghii Rroxscaffold_3G00241770
rosa_rugosa Rorug07G0170700
rosa_samantha Rh7AG311200 Rh7BG303100 Rh7CG330200 Rh7DG311000
rosa_wichuraiana Rw7G026420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1248
AccB1I GGYRCC 1 cut(s) 692
AccB7I CCANNNNNTGG 1 cut(s) 707
AccBSI CCGCTC 1 cut(s) 37
AccI GTMKAC 1 cut(s) 498
AciI CCGC 2 cut(s) 37, 221
AclWI GGATC 3 cut(s) 662, 675, 1216
AcoI YGGCCR 1 cut(s) 1191
AcsI RAATTY 4 cut(s) 247, 769, 1269, 1330
AcuI CTGAAG 3 cut(s) 150, 477, 1233
AcvI CACGTG 1 cut(s) 1265
AcyI GRCGYC 1 cut(s) 1245
AfaI GTAC 5 cut(s) 468, 473, 511, 1204, 1261
AfiI CCNNNNNNNGG 5 cut(s) 31, 663, 689, 702, 707
AflIII ACRYGT 1 cut(s) 1262
AgsI TTSAA 3 cut(s) 264, 552, 606
AjnI CCWGG 2 cut(s) 304, 568
AjuI GAANNNNNNNTTGG 2 cut(s) 694, 726
AluBI AGCT 4 cut(s) 203, 218, 677, 1310
AluI AGCT 4 cut(s) 203, 218, 677, 1310
Alw26I GTCTC 4 cut(s) 279, 370, 593, 1252
AlwI GGATC 3 cut(s) 662, 675, 1216
AoxI GGCC 2 cut(s) 338, 1191
ApeKI GCWGC 2 cut(s) 533, 830
ApoI RAATTY 4 cut(s) 247, 769, 1269, 1330
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 2 cut(s) 105, 271
AspS9I GGNCC 3 cut(s) 161, 311, 338
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 2 cut(s) 294, 973
AsuNHI GCTAGC 1 cut(s) 199
AvaII GGWCC 2 cut(s) 161, 311
BalI TGGCCA 1 cut(s) 1193
BamHI GGATCC 1 cut(s) 667
BanI GGYRCC 1 cut(s) 692
BanII GRGCYC 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 509, 541
BbrPI CACGTG 1 cut(s) 1265
BbsI GAAGAC 1 cut(s) 524
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 520, 817
BccI CCATC 3 cut(s) 42, 460, 679
BceAI ACGGC 1 cut(s) 385
BciT130I CCWGG 2 cut(s) 306, 570
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 4 cut(s) 279, 370, 593, 1252
BfaI CTAG 5 cut(s) 200, 215, 279, 582, 1239
BglII AGATCT 1 cut(s) 1162
BisI GCNGC 2 cut(s) 534, 831
BlsI GCNGC 2 cut(s) 535, 832
BmcAI AGTACT 1 cut(s) 511
Bme1390I CCNGG 3 cut(s) 306, 337, 570
Bme18I GGWCC 2 cut(s) 161, 311
BmgT120I GGNCC 3 cut(s) 161, 311, 338
BmiI GGNNCC 6 cut(s) 7, 163, 669, 694, 745, 1080
BmrFI CCNGG 3 cut(s) 306, 337, 570
BmrI ACTGGG 1 cut(s) 731
BmsI GCATC 4 cut(s) 149, 245, 620, 959
BmtI GCTAGC 1 cut(s) 203
BmuI ACTGGG 1 cut(s) 731
BoxI GACNNNNGTC 1 cut(s) 1088
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 2 cut(s) 216, 327
Bpu10I CCTNAGC 2 cut(s) 27, 642
BpuEI CTTGAG 1 cut(s) 744
BpuMI CCSGG 1 cut(s) 337
BsaAI YACGTR 1 cut(s) 1265
BsaHI GRCGYC 1 cut(s) 1245
BsaJI CCNNGG 2 cut(s) 701, 852
BsaXI ACNNNNNCTCC 4 cut(s) 735, 765, 1010, 1040
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 663, 689, 702, 707
Bse1I ACTGG 3 cut(s) 737, 880, 1210
Bse3DI GCAATG 2 cut(s) 142, 528
BseBI CCWGG 2 cut(s) 306, 570
BseDI CCNNGG 2 cut(s) 701, 852
BseGI GGATG 4 cut(s) 62, 317, 726, 950
BseLI CCNNNNNNNGG 5 cut(s) 31, 663, 689, 702, 707
BseMI GCAATG 2 cut(s) 142, 528
BseMII CTCAG 5 cut(s) 41, 387, 504, 604, 633
BseNI ACTGG 3 cut(s) 737, 880, 1210
BseRI GAGGAG 1 cut(s) 360
BseXI GCAGC 2 cut(s) 520, 817
BshFI GGCC 2 cut(s) 340, 1193
BshNI GGYRCC 1 cut(s) 692
BsiSI CCGG 1 cut(s) 336
BsiWI CGTACG 1 cut(s) 471
BslI CCNNNNNNNGG 5 cut(s) 31, 663, 689, 702, 707
BsmAI GTCTC 4 cut(s) 279, 370, 593, 1252
BsmBI CGTCTC 1 cut(s) 1252
BsmI GAATGC 2 cut(s) 68, 123
BsnI GGCC 2 cut(s) 340, 1193
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 7 cut(s) 541, 667, 1162, 1208, 1216, 1253, 1359
BspACI CCGC 2 cut(s) 37, 221
BspANI GGCC 2 cut(s) 340, 1193
BspCNI CTCAG 5 cut(s) 40, 388, 505, 603, 634
BspLI GGNNCC 6 cut(s) 7, 163, 669, 694, 745, 1080
BspOI GCTAGC 1 cut(s) 203
BspPI GGATC 3 cut(s) 662, 675, 1216
BspT107I GGYRCC 1 cut(s) 692
BsrBI CCGCTC 1 cut(s) 37
BsrDI GCAATG 2 cut(s) 142, 528
BsrI ACTGG 3 cut(s) 737, 880, 1210
BssECI CCNNGG 2 cut(s) 701, 852
BssMI GATC 7 cut(s) 541, 667, 1162, 1208, 1216, 1253, 1359
BssNI GRCGYC 1 cut(s) 1245
BssT1I CCWWGG 2 cut(s) 701, 852
Bst2UI CCWGG 2 cut(s) 306, 570
Bst4CI ACNGT 5 cut(s) 172, 471, 798, 905, 1175
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 1245
BstAPI GCANNNNNTGC 1 cut(s) 1057
BstBAI YACGTR 1 cut(s) 1265
BstC8I GCNNGC 3 cut(s) 114, 180, 201
BstDEI CTNAG 6 cut(s) 27, 396, 513, 590, 642, 1347
BstENI CCTNNNNNAGG 1 cut(s) 700
BstF5I GGATG 4 cut(s) 62, 317, 726, 950
BstHHI GCGC 2 cut(s) 105, 271
BstKTI GATC 7 cut(s) 544, 670, 1165, 1211, 1219, 1256, 1362
BstMAI GTCTC 4 cut(s) 279, 370, 593, 1252
BstMBI GATC 7 cut(s) 541, 667, 1162, 1208, 1216, 1253, 1359
BstMWI GCNNNNNNNGC 4 cut(s) 109, 791, 947, 1057
BstNI CCWGG 2 cut(s) 306, 570
BstPAI GACNNNNGTC 1 cut(s) 1088
BstSCI CCNGG 3 cut(s) 304, 335, 568
BstV1I GCAGC 2 cut(s) 520, 817
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 3 cut(s) 667, 1162, 1208
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 3 cut(s) 667, 1162, 1208
BsuRI GGCC 2 cut(s) 340, 1193
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 4 cut(s) 62, 317, 726, 950
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 3 cut(s) 114, 180, 201
CfoI GCGC 2 cut(s) 105, 271
Cfr13I GGNCC 3 cut(s) 161, 311, 338
Csp6I GTAC 5 cut(s) 467, 472, 510, 1203, 1260
CspCI CAANNNNNGTGG 2 cut(s) 414, 449
CviAII CATG 5 cut(s) 325, 731, 827, 1033, 1227
CviQI GTAC 5 cut(s) 467, 472, 510, 1203, 1260
DdeI CTNAG 6 cut(s) 27, 396, 513, 590, 642, 1347
DpnI GATC 7 cut(s) 543, 669, 1164, 1210, 1218, 1255, 1361
DpnII GATC 7 cut(s) 541, 667, 1162, 1208, 1216, 1253, 1359
EaeI YGGCCR 1 cut(s) 1191
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EciI GGCGGA 1 cut(s) 210
Eco130I CCWWGG 2 cut(s) 701, 852
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 2 cut(s) 161, 311
Eco57I CTGAAG 3 cut(s) 150, 477, 1233
Eco72I CACGTG 1 cut(s) 1265
EcoNI CCTNNNNNAGG 1 cut(s) 700
EcoO109I RGGNCCY 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 1269
EcoRII CCWGG 2 cut(s) 304, 568
EcoT14I CCWWGG 2 cut(s) 701, 852
EcoT22I ATGCAT 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 701, 852
Esp3I CGTCTC 1 cut(s) 1252
FaeI CATG 5 cut(s) 328, 734, 830, 1036, 1230
FatI CATG 5 cut(s) 324, 730, 826, 1032, 1226
FauNDI CATATG 1 cut(s) 343
FblI GTMKAC 1 cut(s) 498
Fnu4HI GCNGC 2 cut(s) 534, 831
FokI GGATG 4 cut(s) 69, 304, 733, 937
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 534, 831
FspBI CTAG 5 cut(s) 200, 215, 279, 582, 1239
GlaI GCGC 2 cut(s) 104, 270
GluI GCNGC 2 cut(s) 534, 831
GsuI CTGGAG 2 cut(s) 216, 327
HaeIII GGCC 2 cut(s) 340, 1193
HapII CCGG 1 cut(s) 336
HhaI GCGC 2 cut(s) 105, 271
Hin1I GRCGYC 1 cut(s) 1245
Hin1II CATG 5 cut(s) 328, 734, 830, 1036, 1230
Hin6I GCGC 2 cut(s) 103, 269
HinP1I GCGC 2 cut(s) 103, 269
HindIII AAGCTT 1 cut(s) 1308
HinfI GANTC 5 cut(s) 21, 764, 857, 1022, 1135
HpaII CCGG 1 cut(s) 336
HphI GGTGA 2 cut(s) 294, 973
Hpy166II GTNNAC 7 cut(s) 405, 499, 868, 1029, 1178, 1203, 1262
Hpy188I TCNGA 8 cut(s) 10, 593, 862, 894, 1009, 1066, 1156, 1213
Hpy188III TCNNGA 7 cut(s) 128, 641, 761, 806, 1139, 1166, 1251
Hpy8I GTNNAC 7 cut(s) 405, 499, 868, 1029, 1178, 1203, 1262
HpyCH4III ACNGT 5 cut(s) 172, 471, 798, 905, 1175
HpyCH4IV ACGT 2 cut(s) 1245, 1264
HpyCH4V TGCA 8 cut(s) 68, 116, 140, 536, 716, 794, 1132, 1282
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 791, 947, 1057
HpyF3I CTNAG 6 cut(s) 27, 396, 513, 590, 642, 1347
HpySE526I ACGT 2 cut(s) 1245, 1264
Hsp92I GRCGYC 1 cut(s) 1245
Hsp92II CATG 5 cut(s) 328, 734, 830, 1036, 1230
HspAI GCGC 2 cut(s) 103, 269
Kzo9I GATC 7 cut(s) 541, 667, 1162, 1208, 1216, 1253, 1359
LmnI GCTCC 5 cut(s) 11, 34, 208, 223, 743
Lsp1109I GCAGC 2 cut(s) 520, 817
LweI GCATC 4 cut(s) 149, 245, 620, 959
MaeI CTAG 5 cut(s) 200, 215, 279, 582, 1239
MaeII ACGT 2 cut(s) 1245, 1264
MaeIII GTNAC 2 cut(s) 1184, 1241
MalI GATC 7 cut(s) 543, 669, 1164, 1210, 1218, 1255, 1361
MbiI CCGCTC 1 cut(s) 37
MboI GATC 7 cut(s) 541, 667, 1162, 1208, 1216, 1253, 1359
MboII GAAGA 9 cut(s) 203, 219, 447, 483, 529, 536, 941, 1079, 1226
MfeI CAATTG 1 cut(s) 619
MflI RGATCY 3 cut(s) 667, 1162, 1208
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 1193
MluNI TGGCCA 1 cut(s) 1193
MlyI GAGTC 3 cut(s) 758, 1016, 1144
MmeI TCCRAC 1 cut(s) 721
Mox20I TGGCCA 1 cut(s) 1193
Mph1103I ATGCAT 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 20
MscI TGGCCA 1 cut(s) 1193
MseI TTAA 4 cut(s) 443, 504, 842, 1149
Msp20I TGGCCA 1 cut(s) 1193
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 3 cut(s) 306, 337, 570
MunI CAATTG 1 cut(s) 619
Mva1269I GAATGC 2 cut(s) 68, 123
MvaI CCWGG 2 cut(s) 306, 570
MwoI GCNNNNNNNGC 4 cut(s) 109, 791, 947, 1057
NciI CCSGG 1 cut(s) 337
NdeI CATATG 1 cut(s) 343
NdeII GATC 7 cut(s) 541, 667, 1162, 1208, 1216, 1253, 1359
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 5 cut(s) 328, 734, 830, 1036, 1230
NlaIV GGNNCC 6 cut(s) 7, 163, 669, 694, 745, 1080
NmuCI GTSAC 2 cut(s) 1184, 1241
NsiI ATGCAT 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 1270
PctI GAATGC 2 cut(s) 68, 123
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 2 cut(s) 21, 857
Pfl23II CGTACG 1 cut(s) 471
PflMI CCANNNNNTGG 1 cut(s) 707
PfoI TCCNGGA 1 cut(s) 568
PkrI GCNGC 2 cut(s) 535, 832
PleI GAGTC 3 cut(s) 758, 1016, 1143
PmaCI CACGTG 1 cut(s) 1265
PmlI CACGTG 1 cut(s) 1265
PpsI GAGTC 3 cut(s) 758, 1016, 1143
Ppu21I YACGTR 1 cut(s) 1265
PpuMI RGGWCCY 1 cut(s) 311
PshAI GACNNNNGTC 1 cut(s) 1088
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 2 cut(s) 304, 568
PspCI CACGTG 1 cut(s) 1265
PspGI CCWGG 2 cut(s) 304, 568
PspLI CGTACG 1 cut(s) 471
PspN4I GGNNCC 6 cut(s) 7, 163, 669, 694, 745, 1080
PspPI GGNCC 3 cut(s) 161, 311, 338
PspPPI RGGWCCY 1 cut(s) 311
PsuI RGATCY 3 cut(s) 667, 1162, 1208
RsaI GTAC 5 cut(s) 468, 473, 511, 1204, 1261
RsaNI GTAC 5 cut(s) 467, 472, 510, 1203, 1260
SaqAI TTAA 4 cut(s) 443, 504, 842, 1149
SatI GCNGC 2 cut(s) 534, 831
Sau3AI GATC 7 cut(s) 541, 667, 1162, 1208, 1216, 1253, 1359
Sau96I GGNCC 3 cut(s) 161, 311, 338
ScaI AGTACT 1 cut(s) 511
SchI GAGTC 3 cut(s) 758, 1016, 1144
ScrFI CCNGG 3 cut(s) 306, 337, 570
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 4 cut(s) 149, 245, 620, 959
SinI GGWCC 2 cut(s) 161, 311
SmlI CTYRAG 1 cut(s) 759
SmoI CTYRAG 1 cut(s) 759
SsiI CCGC 2 cut(s) 37, 221
SspMI CTAG 5 cut(s) 200, 215, 279, 582, 1239
StyD4I CCNGG 3 cut(s) 304, 335, 568
StyI CCWWGG 2 cut(s) 701, 852
TaaI ACNGT 5 cut(s) 172, 471, 798, 905, 1175
TaiI ACGT 2 cut(s) 1248, 1267
TaqI TCGA 1 cut(s) 1252
TatI WGTACW 2 cut(s) 509, 1202
TfiI GAWTC 2 cut(s) 21, 857
Tru1I TTAA 4 cut(s) 443, 504, 842, 1149
Tru9I TTAA 4 cut(s) 443, 504, 842, 1149
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 2 cut(s) 1184, 1241
TseI GCWGC 2 cut(s) 533, 830
Tsp45I GTSAC 2 cut(s) 1184, 1241
TspDTI ATGAA 4 cut(s) 306, 536, 987, 1110
TspRI CASTG 1 cut(s) 412
Van91I CCANNNNNTGG 1 cut(s) 707
VpaK11BI GGWCC 2 cut(s) 161, 311
XagI CCTNNNNNAGG 1 cut(s) 700
XapI RAATTY 4 cut(s) 247, 769, 1269, 1330
XcmI CCANNNNNNNNNTGG 1 cut(s) 922
XmiI GTMKAC 1 cut(s) 498
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 5 cut(s) 200, 215, 279, 582, 1239
ZraI GACGTC 1 cut(s) 1246
ZrmI AGTACT 1 cut(s) 511
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.