pycom17g00570

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0015014
Physical Location & Seq
Reverse (-)
407212 .. 407899
688 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 540 bp
ATGAATCCAGCAATTCTCGTGGCCATTTCATCTTTCTTCCTCCTCCAGTCAGTAGTGTTTCTGGGAGGAGTTGAAGCAGCAGAAAAAGCCACTAAGCCAGAAGCAAAGGGTAACTCCCAGATCATTGTAATGGGCCTTGTTTACTGTGACATCTGCTCCAACAACACCTTCTCCAGACACAGCTACTTCCTACCAGGTGCTGAAGTAAAAATCGATTGCATCTTCCAAGCTGTTTCGCCAAGAACCTCAGAGCACATATCGTTCTCGGTGAATAGAACTACAAACAGATATGGGGTGTACAAGTTGGAAATCCCATCCGTTGAGGGGATCAAATGTGCAGAGGATTCAGCAATTGTATCTTCCTGCCATGCAAGCTTGATGTGGAGTTCTTCTTCTGCATGCAATGTTCCTGGTTACAAATCCACATCAAATGAAATAGCAGTCAAATCGAAACAGGCCAATCTCTGCATCTACAGCCTAAACGCTTTGAATTTCAGACCTTCAAAGAGAGATGTTAAATTGTGTGGGAAGAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

180

Amino Acids

19.47

Weight (kDa)

9.02

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 43 - 141 1.1e-20 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015014)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26960 AT5G41050
fragaria_vesca FvH4_6g53930
malus_domestica MD17G1011000.v1.1
prunus_persica Prupe.3G309900_v2.0.a1
pyrus_communis pycom17g00570
rosa_chinensis RchiOBHm_Chr2g0176091
rosa_laevigata RLG00000022380
rosa_multiflora Rmu_sc0009879.1_g000002
rosa_roxburghii Rroxscaffold_2G00076780
rosa_rugosa Rorug02G0590400
rosa_samantha Rh2AG669200 Rh2BG680800 Rh2CG643700 Rh2DG694500
rosa_wichuraiana Rw2G054890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 335
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 324
AgsI TTSAA 3 cut(s) 74, 490, 504
AjnI CCWGG 2 cut(s) 193, 409
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 3 cut(s) 183, 230, 375
AluI AGCT 3 cut(s) 183, 230, 375
Alw21I GWGCWC 1 cut(s) 255
AlwI GGATC 1 cut(s) 335
AlwNI CAGNNNCTG 1 cut(s) 200
AoxI GGCC 3 cut(s) 21, 133, 456
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 490
AspS9I GGNCC 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 280
BalI TGGCCA 1 cut(s) 23
BauI CACGAG 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 322
BcgI CGANNNNNNTGC 2 cut(s) 429, 463
BciT130I CCWGG 2 cut(s) 195, 411
BfmI CTRYAG 1 cut(s) 472
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 2 cut(s) 195, 411
BmgT120I GGNCC 1 cut(s) 133
BmrFI CCNGG 2 cut(s) 195, 411
BmsI GCATC 2 cut(s) 228, 477
BpmI CTGGAG 2 cut(s) 29, 157
Bsa29I ATCGAT 1 cut(s) 213
BsaXI ACNNNNNCTCC 4 cut(s) 140, 155, 170, 185
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 409
BseBI CCWGG 2 cut(s) 195, 411
BseCI ATCGAT 1 cut(s) 213
BseGI GGATG 1 cut(s) 314
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 2 cut(s) 32, 81
BseXI GCAGC 1 cut(s) 89
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 3 cut(s) 23, 135, 458
BshVI ATCGAT 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 324
BsnI GGCC 3 cut(s) 23, 135, 458
Bsp1286I GDGCHC 1 cut(s) 255
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 2 cut(s) 120, 327
BspANI GGCC 3 cut(s) 23, 135, 458
BspCNI CTCAG 1 cut(s) 260
BspDI ATCGAT 1 cut(s) 213
BspPI GGATC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 409
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 1 cut(s) 46
BssMI GATC 2 cut(s) 120, 327
BssSI CACGAG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 17
Bst2UI CCWGG 2 cut(s) 195, 411
Bst4CI ACNGT 1 cut(s) 146
BstAUI TGTACA 1 cut(s) 297
BstC8I GCNNGC 2 cut(s) 373, 400
BstDEI CTNAG 2 cut(s) 93, 247
BstF5I GGATG 1 cut(s) 314
BstKTI GATC 2 cut(s) 123, 330
BstMBI GATC 2 cut(s) 120, 327
BstMWI GCNNNNNNNGC 3 cut(s) 86, 372, 474
BstNI CCWGG 2 cut(s) 195, 411
BstNSI RCATGY 1 cut(s) 402
BstSCI CCNGG 2 cut(s) 193, 409
BstSFI CTRYAG 1 cut(s) 472
BstV1I GCAGC 1 cut(s) 89
Bsu15I ATCGAT 1 cut(s) 213
BsuRI GGCC 3 cut(s) 23, 135, 458
BsuTUI ATCGAT 1 cut(s) 213
BtsCI GGATG 1 cut(s) 314
Cac8I GCNNGC 2 cut(s) 373, 400
CaiI CAGNNNCTG 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 133
ClaI ATCGAT 1 cut(s) 213
CsiI ACCWGGT 1 cut(s) 193
Csp6I GTAC 1 cut(s) 298
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 2 cut(s) 368, 399
CviJI RGCY 9 cut(s) 23, 89, 97, 135, 183, 230, 375, 458, 477
CviKI_1 RGCY 9 cut(s) 23, 89, 97, 135, 183, 230, 375, 458, 477
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 2 cut(s) 93, 247
DpnI GATC 2 cut(s) 122, 329
DpnII GATC 2 cut(s) 120, 327
EaeI YGGCCR 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 222
EcoRII CCWGG 2 cut(s) 193, 409
FaeI CATG 2 cut(s) 371, 402
FaiI YATR 4 cut(s) 257, 291, 369, 400
FatI CATG 2 cut(s) 367, 398
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
GsuI CTGGAG 2 cut(s) 29, 157
HaeIII GGCC 3 cut(s) 23, 135, 458
Hin1II CATG 2 cut(s) 371, 402
HindIII AAGCTT 1 cut(s) 373
HinfI GANTC 2 cut(s) 4, 344
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 142, 298
Hpy188I TCNGA 2 cut(s) 250, 497
Hpy188III TCNNGA 1 cut(s) 174
Hpy8I GTNNAC 2 cut(s) 142, 298
HpyAV CCTTC 2 cut(s) 178, 510
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 6 cut(s) 219, 338, 371, 398, 402, 468
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 372, 474
HpyF3I CTNAG 2 cut(s) 93, 247
Hsp92II CATG 2 cut(s) 371, 402
Kzo9I GATC 2 cut(s) 120, 327
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 2 cut(s) 228, 477
MabI ACCWGGT 1 cut(s) 193
MaeIII GTNAC 3 cut(s) 110, 146, 413
MalI GATC 2 cut(s) 122, 329
MboI GATC 2 cut(s) 120, 327
MboII GAAGA 5 cut(s) 28, 214, 351, 381, 384
MfeI CAATTG 1 cut(s) 351
MhlI GDGCHC 1 cut(s) 255
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 4 cut(s) 12, 351, 490, 518
MluNI TGGCCA 1 cut(s) 23
MmeI TCCRAC 2 cut(s) 183, 285
MnlI CCTC 6 cut(s) 50, 53, 59, 256, 316, 334
Mox20I TGGCCA 1 cut(s) 23
MscI TGGCCA 1 cut(s) 23
MseI TTAA 1 cut(s) 516
MslI CAYNNNNRTG 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 23
MspR9I CCNGG 2 cut(s) 195, 411
MunI CAATTG 1 cut(s) 351
MvaI CCWGG 2 cut(s) 195, 411
MwoI GCNNNNNNNGC 3 cut(s) 86, 372, 474
NdeII GATC 2 cut(s) 120, 327
NlaIII CATG 2 cut(s) 371, 402
NmuCI GTSAC 1 cut(s) 146
NspI RCATGY 1 cut(s) 402
PaeI GCATGC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 4, 344
PkrI GCNGC 1 cut(s) 79
Psp6I CCWGG 2 cut(s) 193, 409
PspGI CCWGG 2 cut(s) 193, 409
PspPI GGNCC 1 cut(s) 133
PstNI CAGNNNCTG 1 cut(s) 200
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 2 cut(s) 120, 327
Sau96I GGNCC 1 cut(s) 133
ScrFI CCNGG 2 cut(s) 195, 411
SduI GDGCHC 1 cut(s) 255
SetI ASST 7 cut(s) 170, 185, 199, 232, 248, 377, 502
SexAI ACCWGGT 1 cut(s) 193
SfaNI GCATC 2 cut(s) 228, 477
SfcI CTRYAG 1 cut(s) 472
SmiMI CAYNNNNRTG 1 cut(s) 128
SphI GCATGC 1 cut(s) 402
Sse9I AATT 4 cut(s) 12, 351, 490, 518
StyD4I CCNGG 2 cut(s) 193, 409
TaaI ACNGT 1 cut(s) 146
TaqI TCGA 2 cut(s) 213, 449
TasI AATT 4 cut(s) 12, 351, 490, 518
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 2 cut(s) 4, 344
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 3 cut(s) 17, 18, 447
TspGWI ACGGA 1 cut(s) 307
XapI RAATTY 1 cut(s) 490
XceI RCATGY 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.