pycom17g01650

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013295
Physical Location & Seq
Reverse (-)
1067161 .. 1067983
823 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 528 bp
ATGGCCAACTTCAACTGCAGCATGGTTTATCTGTTTTCTCTGATGATGGTTTTCTTCTGGTTTGGTCATTTCTCGGCCTCCGCCTTTGAGTTCCAGGTTGGTGGATACAAAGACTGGGTTGTCCCTCCTGCCAACGACACCAAAATCTACAACGACTGGGCCTCCGAAAACCGTTTCCAAGTCGGCGACACCATCCGCTTTCACTACAAGAAGGATTCGGTGATGGAGGTGACGGAGGCGGAGTACAAGAAGTGCAACTCGACTCGCCCCAACTTCTTCTCCAACACTGGAAACACCGTTTACACGTTCGACCACTCGGGCTCCTTCTACTTCATCAGTGGAGCCGCTGGACACTGCGAGCGGGGACAGCGCATGACAGTTAAGGTGATGGCGGCGGAGGAGGAGGACTCTCCGTCCGGGGGCGACGCCAAAAGATCTTCCGGTGCTGCAGTTTCCTCAGTTGGAGTCTTCAAGCATGTCCTTGTTCCGTTTGTTATGTCATATGCTGTTGCTTCTGTTATTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

176

Amino Acids

19.59

Weight (kDa)

6.19

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 48 - 123 2.8e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013295)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14345
fragaria_vesca FvH4_6g52240
malus_domestica MD09G1019300.v1.1 MD17G1019900.v1.1
prunus_persica Prupe.3G297100_v2.0.a1 Prupe.3G297700_v2.0.a1
pyrus_communis pycom111g01600 pycom17g01650
rosa_chinensis RchiOBHm_Chr2g0173791
rosa_laevigata RLG00000022222
rosa_multiflora Rmu_sc0033569.1_g000002
rosa_roxburghii Rroxscaffold_2G00078620
rosa_rugosa Rorug02G0572800
rosa_samantha Rh2AG651800 Rh2BG662500 Rh2CG627200 Rh2DG677600
rosa_wichuraiana Rw2G053510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
AccBSI CCGCTC 1 cut(s) 361
AciI CCGC 7 cut(s) 81, 196, 239, 345, 361, 392, 395
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 426
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 419
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 2 cut(s) 13, 472
AhdI GACNNNNNGTC 1 cut(s) 412
AjnI CCWGG 1 cut(s) 93
Ama87I CYCGRG 1 cut(s) 316
AoxI GGCC 3 cut(s) 3, 75, 159
ApeKI GCWGC 2 cut(s) 18, 446
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 3 cut(s) 232, 241, 397
AvaI CYCGRG 1 cut(s) 316
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 460
BbvI GCAGC 2 cut(s) 30, 433
BccI CCATC 4 cut(s) 40, 200, 217, 382
BciT130I CCWGG 1 cut(s) 95
BciVI GTATCC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 418
BfaI CTAG 1 cut(s) 526
BfmI CTRYAG 2 cut(s) 16, 447
BfuI GTATCC 1 cut(s) 98
BglII AGATCT 1 cut(s) 434
BisI GCNGC 4 cut(s) 19, 345, 393, 447
BlsI GCNGC 4 cut(s) 20, 346, 394, 448
Bme1390I CCNGG 2 cut(s) 95, 418
BmeRI GACNNNNNGTC 1 cut(s) 412
BmeT110I CYCGRG 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 2 cut(s) 322, 343
BmrFI CCNGG 2 cut(s) 95, 418
BmrI ACTGGG 2 cut(s) 124, 166
BmuI ACTGGG 2 cut(s) 124, 166
BpiI GAAGAC 1 cut(s) 460
BplI GAGNNNNNCTC 2 cut(s) 392, 424
BpuMI CCSGG 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 417
BsaWI WCCGGW 1 cut(s) 440
BsaXI ACNNNNNCTCC 8 cut(s) 146, 176, 227, 257, 263, 293, 305, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse1I ACTGG 3 cut(s) 119, 161, 292
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 3 cut(s) 119, 161, 292
BseRI GAGGAG 2 cut(s) 413, 416
BseXI GCAGC 2 cut(s) 30, 433
BshFI GGCC 3 cut(s) 5, 77, 161
BsiHKCI CYCGRG 1 cut(s) 316
BsiSI CCGG 2 cut(s) 417, 441
BslFI GGGAC 2 cut(s) 107, 378
BslI CCNNNNNNNGG 1 cut(s) 419
BsmFI GGGAC 2 cut(s) 107, 378
BsnI GGCC 3 cut(s) 5, 77, 161
BsoBI CYCGRG 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 1 cut(s) 434
BspACI CCGC 7 cut(s) 81, 196, 239, 345, 361, 392, 395
BspANI GGCC 3 cut(s) 5, 77, 161
BspCNI CTCAG 1 cut(s) 470
BspLI GGNNCC 2 cut(s) 322, 343
BspMAI CTGCAG 2 cut(s) 20, 451
BsrBI CCGCTC 1 cut(s) 361
BsrI ACTGG 3 cut(s) 119, 161, 292
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 1 cut(s) 434
BssNI GRCGYC 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 3 cut(s) 173, 298, 379
BstACI GRCGYC 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 1 cut(s) 457
BstF5I GGATG 1 cut(s) 192
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 1 cut(s) 437
BstMBI GATC 1 cut(s) 434
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 2 cut(s) 93, 416
BstSFI CTRYAG 2 cut(s) 16, 447
BstV1I GCAGC 2 cut(s) 30, 433
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 1 cut(s) 434
BstXI CCANNNNNNTGG 1 cut(s) 101
BstYI RGATCY 1 cut(s) 434
BsuI GTATCC 1 cut(s) 98
BsuRI GGCC 3 cut(s) 5, 77, 161
BtsCI GGATG 1 cut(s) 192
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 3 cut(s) 285, 343, 352
Cac8I GCNNGC 1 cut(s) 359
CfoI GCGC 1 cut(s) 372
Cfr13I GGNCC 1 cut(s) 159
CseI GACGC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 244
CviAII CATG 3 cut(s) 22, 373, 476
CviJI RGCY 5 cut(s) 5, 77, 161, 321, 344
CviKI_1 RGCY 5 cut(s) 5, 77, 161, 321, 344
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 457
DpnI GATC 1 cut(s) 436
DpnII GATC 1 cut(s) 434
DrdI GACNNNNNNGTC 1 cut(s) 119
DriI GACNNNNNGTC 1 cut(s) 412
DseDI GACNNNNNNGTC 1 cut(s) 119
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 412
EciI GGCGGA 3 cut(s) 70, 254, 410
Eco24I GRGCYC 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 323
FaeI CATG 3 cut(s) 25, 376, 479
FaiI YATR 6 cut(s) 23, 374, 477, 497, 502, 504
FaqI GGGAC 2 cut(s) 107, 378
FatI CATG 3 cut(s) 21, 372, 475
FauI CCCGC 1 cut(s) 354
FauNDI CATATG 1 cut(s) 502
Fnu4HI GCNGC 4 cut(s) 19, 345, 393, 447
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 4 cut(s) 19, 345, 393, 447
FspBI CTAG 1 cut(s) 526
GlaI GCGC 1 cut(s) 371
GluI GCNGC 4 cut(s) 19, 345, 393, 447
HaeIII GGCC 3 cut(s) 5, 77, 161
HapII CCGG 2 cut(s) 417, 441
HgaI GACGC 1 cut(s) 434
HhaI GCGC 1 cut(s) 372
Hin1I GRCGYC 1 cut(s) 426
Hin1II CATG 3 cut(s) 25, 376, 479
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HinfI GANTC 4 cut(s) 215, 262, 407, 465
HpaII CCGG 2 cut(s) 417, 441
HphI GGTGA 3 cut(s) 232, 241, 397
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 2 cut(s) 42, 166
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 1 cut(s) 428
HpyAV CCTTC 2 cut(s) 205, 334
HpyCH4III ACNGT 3 cut(s) 173, 298, 379
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 18, 255, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 1 cut(s) 457
HpySE526I ACGT 1 cut(s) 305
Hsp92I GRCGYC 1 cut(s) 426
Hsp92II CATG 3 cut(s) 25, 376, 479
HspAI GCGC 1 cut(s) 370
Kzo9I GATC 1 cut(s) 434
LmnI GCTCC 2 cut(s) 326, 341
Lsp1109I GCAGC 2 cut(s) 30, 433
MaeI CTAG 1 cut(s) 526
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 436
MbiI CCGCTC 1 cut(s) 361
MboI GATC 1 cut(s) 434
MboII GAAGA 4 cut(s) 46, 268, 429, 460
MflI RGATCY 1 cut(s) 434
MhlI GDGCHC 1 cut(s) 323
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 256, 401, 474
MmeI TCCRAC 2 cut(s) 306, 442
MnlI CCTC 9 cut(s) 88, 135, 172, 220, 229, 391, 394, 397, 466
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 2 cut(s) 417, 441
MspR9I CCNGG 2 cut(s) 95, 418
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 367
NciI CCSGG 1 cut(s) 418
NdeI CATATG 1 cut(s) 502
NdeII GATC 1 cut(s) 434
NlaIII CATG 3 cut(s) 25, 376, 479
NlaIV GGNNCC 2 cut(s) 322, 343
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 1 cut(s) 479
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 4 cut(s) 20, 346, 394, 448
PleI GAGTC 3 cut(s) 256, 401, 473
PpsI GAGTC 3 cut(s) 256, 401, 473
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 2 cut(s) 322, 343
PspPI GGNCC 1 cut(s) 159
PstI CTGCAG 2 cut(s) 20, 451
PsuI RGATCY 1 cut(s) 434
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 4 cut(s) 19, 345, 393, 447
Sau3AI GATC 1 cut(s) 434
Sau96I GGNCC 1 cut(s) 159
SchI GAGTC 3 cut(s) 256, 401, 474
ScrFI CCNGG 2 cut(s) 95, 418
SduI GDGCHC 1 cut(s) 323
SetI ASST 4 cut(s) 99, 231, 308, 387
SfcI CTRYAG 2 cut(s) 16, 447
SsiI CCGC 7 cut(s) 81, 196, 239, 345, 361, 392, 395
SspMI CTAG 1 cut(s) 526
StyD4I CCNGG 2 cut(s) 93, 416
TaaI ACNGT 3 cut(s) 173, 298, 379
TaiI ACGT 1 cut(s) 308
TaqI TCGA 2 cut(s) 260, 309
TatI WGTACW 1 cut(s) 243
TauI GCSGC 2 cut(s) 347, 395
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 3 cut(s) 292, 343, 359
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 2 cut(s) 18, 446
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 322
TspGWI ACGGA 3 cut(s) 248, 402, 477
TspRI CASTG 3 cut(s) 292, 343, 359
XceI RCATGY 1 cut(s) 479
XspI CTAG 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.