Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001979

Physical Location & Seq

Genomic Coordinates Reverse (-)

1195426 .. 1197535

Gene Structure 2110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCAGCGCCGAACATTGCAGGAATACTGGAAAAGTCGAAAGAGCTCGATCAATTAAGGAAAGAGCAAGAAGAGGTGCTCATCGAGATAAATAAGATGCATAAGAAGCTCCAAACTACTCCTGAAGTGGTTGAGAAGCCTGGGGATAATTCATTGTCGAAGCTGAAGAATTTATATGTGCATGCCAAAGATCTTTCTGAAAGTGAAGTAACTGTATCCAATTTGTTGTTGAGTCAACTCGATGCTCTATTGCCTTCTGGACCTCCAGGGCAGCCGCGAAGAAGGATGGAAGGTAATGAGCAGAAAAGGAAGAGAATGAAGACTGATTCAGACATTTCAAGGATTTCCCCTTCCGTGCGAAGTGAACTCGAGGCTTGTGCTAGTCTGAAAGGGGAACAGGTAGCAGCTAGGGTTACAGTCACTCAAGAAGATGCTGACAAGGATGAGTGGTTTGTTGTAAAAGTGATACATTTTGACAAGGATACAAGAGAATTTGAAGTACTAGATGAGGAGCCGGGTGATGATGAAGAGGGTGGTGTCCAAAGAAAATACATGTTACCTATGAGCGCTATTATCCCTTTCCCGAAGAGAAACGATGCTTCCAGTGCTAAAGATTTCCCTACTGGAAGACCCGTTTTGGCTGTATATCCAGGAACAACTGCACTATACAAGGCAACTGTGGTGAATGGCCATCGCAAGAGGAAGACAGATGATTATTTGTTGGAATTCGATGACGACGAGGAAGACGGATCCTTGCCTCAGAGAACAGTGCCCTTCCATAAGGTGGTTGCCCTGCCGGAAGGCCATCGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051276 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1325

Protein Analysis

272

Amino Acids

30.52

Weight (kDa)

5.44

Isoelectric Point (pI)

64.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGF29_Tudor	PF07039	130 - 266	3.3e-33	SGF29 tudor-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT3G27460 AT5G40550 AT5G40550 AT5G40550 AT5G40550
fragaria_vesca	FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240 FvH4_1g25240
malus_domestica	MD09G1022400.v1.1 MD17G1021800.v1.1 MD17G1021900.v1.1
prunus_persica	Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1 Prupe.3G294200_v2.0.a1
pyrus_communis	pycom111g01880 pycom17g01900
rosa_chinensis	RchiOBHm_Chr2g0123161
rosa_laevigata	RLG00000018732
rosa_multiflora	Rmu_sc0005573.1_g000008 Rmu_sc0018145.1_g000002
rosa_roxburghii	Rroxscaffold_2G00120870
rosa_rugosa	Rorug02G0243400 Rorug02G0243400 Rorug02G0243500
rosa_samantha	Rh2AG303000 Rh2BG310900 Rh2CG289300 Rh2DG327000
rosa_wichuraiana	Rw0G004900 Rw2G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	784
AccII	CGCG	1 cut(s)	277
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	2 cut(s)	744, 757
AcoI	YGGCCR	1 cut(s)	688
AcsI	RAATTY	3 cut(s)	169, 491, 725
AcuI	CTGAAG	2 cut(s)	144, 185
AfaI	GTAC	1 cut(s)	501
AfeI	AGCGCT	1 cut(s)	568
AfiI	CCNNNNNNNGG	1 cut(s)	784
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	2 cut(s)	339, 497
AjnI	CCWGG	3 cut(s)	139, 265, 649
AluBI	AGCT	4 cut(s)	46, 109, 163, 407
AluI	AGCT	4 cut(s)	46, 109, 163, 407
Alw21I	GWGCWC	2 cut(s)	48, 81
AlwI	GGATC	2 cut(s)	744, 757
Ama87I	CYCGRG	1 cut(s)	368
Aor51HI	AGCGCT	1 cut(s)	568
AoxI	GGCC	2 cut(s)	688, 802
ApeKI	GCWGC	2 cut(s)	271, 404
ApoI	RAATTY	3 cut(s)	169, 491, 725
AspLEI	GCGC	2 cut(s)	10, 569
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	516
AsuHPI	GGTGA	2 cut(s)	530, 694
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	774
BalI	TGGCCA	1 cut(s)	690
BamHI	GGATCC	1 cut(s)	749
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	4 cut(s)	326, 634, 710, 750
Bbv12I	GWGCWC	2 cut(s)	48, 81
BbvI	GCAGC	2 cut(s)	283, 416
BccI	CCATC	3 cut(s)	280, 699, 813
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	3 cut(s)	141, 267, 651
BciVI	GTATCC	2 cut(s)	226, 475
BcnI	CCSGG	1 cut(s)	516
BfaI	CTAG	3 cut(s)	381, 408, 503
BfoI	RGCGCY	2 cut(s)	11, 570
BfuI	GTATCC	2 cut(s)	226, 475
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	3 cut(s)	272, 275, 405
BlsI	GCNGC	3 cut(s)	273, 276, 406
BmcAI	AGTACT	1 cut(s)	501
Bme1390I	CCNGG	4 cut(s)	141, 267, 516, 651
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	2 cut(s)	513, 751
BmrFI	CCNGG	4 cut(s)	141, 267, 516, 651
BmsI	GCATC	4 cut(s)	87, 232, 421, 586
BpiI	GAAGAC	4 cut(s)	326, 634, 710, 750
BpmI	CTGGAG	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	516
BsaJI	CCNNGG	2 cut(s)	140, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	784
Bse1I	ACTGG	4 cut(s)	33, 603, 628, 811
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	3 cut(s)	141, 267, 651
BseDI	CCNNGG	2 cut(s)	140, 266
BseGI	GGATG	2 cut(s)	291, 448
BseLI	CCNNNNNNNGG	1 cut(s)	784
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	773
BseNI	ACTGG	4 cut(s)	33, 603, 628, 811
BseRI	GAGGAG	1 cut(s)	524
BseSI	GKGCMC	1 cut(s)	774
BseXI	GCAGC	2 cut(s)	283, 416
BsgI	GTGCAG	1 cut(s)	645
Bsh1236I	CGCG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	690, 804
BsiHKAI	GWGCWC	2 cut(s)	48, 81
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	515, 797
BslI	CCNNNNNNNGG	1 cut(s)	784
BsnI	GGCC	2 cut(s)	690, 804
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	3 cut(s)	48, 81, 774
Bsp143I	GATC	3 cut(s)	49, 190, 749
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	2 cut(s)	690, 804
BspCNI	CTCAG	1 cut(s)	772
BspFNI	CGCG	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	513, 751
BspPI	GGATC	2 cut(s)	744, 757
BsrDI	GCAATG	1 cut(s)	15
BsrI	ACTGG	4 cut(s)	33, 603, 628, 811
BssECI	CCNNGG	2 cut(s)	140, 266
BssMI	GATC	3 cut(s)	49, 190, 749
Bst2UI	CCWGG	3 cut(s)	141, 267, 651
Bst4CI	ACNGT	4 cut(s)	214, 418, 679, 769
Bst6I	CTCTTC	4 cut(s)	66, 305, 522, 581
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	759
BstF5I	GGATG	2 cut(s)	291, 448
BstFNI	CGCG	1 cut(s)	277
BstH2I	RGCGCY	2 cut(s)	11, 570
BstHHI	GCGC	2 cut(s)	10, 569
BstKTI	GATC	3 cut(s)	52, 193, 752
BstMBI	GATC	3 cut(s)	49, 190, 749
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 605
BstNI	CCWGG	3 cut(s)	141, 267, 651
BstNSI	RCATGY	2 cut(s)	185, 556
BstSCI	CCNGG	4 cut(s)	139, 265, 514, 649
BstSLI	GKGCMC	1 cut(s)	774
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	283, 416
BstV2I	GAAGAC	4 cut(s)	326, 634, 710, 750
BstX2I	RGATCY	2 cut(s)	190, 749
BstYI	RGATCY	2 cut(s)	190, 749
BsuI	GTATCC	2 cut(s)	226, 475
BsuRI	GGCC	2 cut(s)	690, 804
BtgZI	GCGATG	2 cut(s)	677, 791
BtsCI	GGATG	2 cut(s)	291, 448
BtsIMutI	CAGTG	2 cut(s)	610, 774
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	2 cut(s)	10, 569
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	500
CviAII	CATG	2 cut(s)	182, 553
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	1 cut(s)	759
DpnI	GATC	3 cut(s)	51, 192, 751
DpnII	GATC	3 cut(s)	49, 190, 749
EaeI	YGGCCR	1 cut(s)	688
Eam1104I	CTCTTC	4 cut(s)	66, 305, 522, 581
EarI	CTCTTC	4 cut(s)	66, 305, 522, 581
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	260
Eco47III	AGCGCT	1 cut(s)	568
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	144, 185
Eco88I	CYCGRG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	3 cut(s)	139, 265, 649
EcoT22I	ATGCAT	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	2 cut(s)	185, 556
FaiI	YATR	9 cut(s)	102, 175, 177, 183, 554, 563, 646, 667, 780
FatI	CATG	2 cut(s)	181, 552
Fnu4HI	GCNGC	3 cut(s)	272, 275, 405
FokI	GGATG	2 cut(s)	298, 455
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	3 cut(s)	272, 275, 405
FspBI	CTAG	3 cut(s)	381, 408, 503
GlaI	GCGC	2 cut(s)	9, 568
GluI	GCNGC	3 cut(s)	272, 275, 405
GsuI	CTGGAG	1 cut(s)	249
HaeII	RGCGCY	2 cut(s)	11, 570
HaeIII	GGCC	2 cut(s)	690, 804
HapII	CCGG	2 cut(s)	515, 797
HhaI	GCGC	2 cut(s)	10, 569
Hin1II	CATG	2 cut(s)	185, 556
Hin6I	GCGC	2 cut(s)	8, 567
HinP1I	GCGC	2 cut(s)	8, 567
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HinfI	GANTC	2 cut(s)	232, 326
HpaII	CCGG	2 cut(s)	515, 797
HphI	GGTGA	2 cut(s)	530, 694
Hpy166II	GTNNAC	2 cut(s)	236, 365
Hpy188I	TCNGA	4 cut(s)	199, 331, 387, 762
Hpy188III	TCNNGA	5 cut(s)	85, 122, 258, 425, 583
Hpy8I	GTNNAC	2 cut(s)	236, 365
Hpy99I	CGWCG	1 cut(s)	740
HpyAV	CCTTC	6 cut(s)	264, 276, 284, 360, 784, 794
HpyCH4III	ACNGT	4 cut(s)	214, 418, 679, 769
HpyCH4V	TGCA	4 cut(s)	20, 100, 181, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 605
HpyF3I	CTNAG	1 cut(s)	759
Hsp92II	CATG	2 cut(s)	185, 556
HspAI	GCGC	2 cut(s)	8, 567
Kzo9I	GATC	3 cut(s)	49, 190, 749
LmnI	GCTCC	2 cut(s)	114, 511
Lsp1109I	GCAGC	2 cut(s)	283, 416
LweI	GCATC	4 cut(s)	87, 232, 421, 586
MaeI	CTAG	3 cut(s)	381, 408, 503
MaeIII	GTNAC	4 cut(s)	208, 412, 418, 555
MalI	GATC	3 cut(s)	51, 192, 751
MboI	GATC	3 cut(s)	49, 190, 749
MflI	RGATCY	2 cut(s)	190, 749
MhlI	GDGCHC	3 cut(s)	48, 81, 774
MlsI	TGGCCA	1 cut(s)	690
MluCI	AATT	6 cut(s)	53, 148, 169, 220, 491, 725
MluNI	TGGCCA	1 cut(s)	690
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	8 cut(s)	67, 273, 364, 502, 523, 693, 733, 768
Mox20I	TGGCCA	1 cut(s)	690
Mph1103I	ATGCAT	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	690
MseI	TTAA	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	690
MspI	CCGG	2 cut(s)	515, 797
MspR9I	CCNGG	4 cut(s)	141, 267, 516, 651
MvaI	CCWGG	3 cut(s)	141, 267, 651
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	2 cut(s)	106, 605
NciI	CCSGG	1 cut(s)	516
NdeII	GATC	3 cut(s)	49, 190, 749
NlaIII	CATG	2 cut(s)	185, 556
NlaIV	GGNNCC	2 cut(s)	513, 751
NmuCI	GTSAC	1 cut(s)	418
NsiI	ATGCAT	1 cut(s)	102
NspI	RCATGY	2 cut(s)	185, 556
PaeI	GCATGC	1 cut(s)	185
PaeR7I	CTCGAG	1 cut(s)	368
PciI	ACATGT	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	1 cut(s)	735
PfeI	GAWTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	784
PfoI	TCCNGGA	1 cut(s)	649
PkrI	GCNGC	3 cut(s)	273, 276, 406
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
PscI	ACATGT	1 cut(s)	552
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	3 cut(s)	139, 265, 649
PspGI	CCWGG	3 cut(s)	139, 265, 649
PspN4I	GGNNCC	2 cut(s)	513, 751
PspPI	GGNCC	1 cut(s)	260
PspXI	VCTCGAGB	1 cut(s)	368
PsuI	RGATCY	2 cut(s)	190, 749
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	3 cut(s)	272, 275, 405
Sau3AI	GATC	3 cut(s)	49, 190, 749
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	501
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	4 cut(s)	141, 267, 516, 651
SduI	GDGCHC	3 cut(s)	48, 81, 774
SfaNI	GCATC	4 cut(s)	87, 232, 421, 586
Sfr274I	CTCGAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	368, 423
SmoI	CTYRAG	2 cut(s)	368, 423
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	6 cut(s)	53, 148, 169, 220, 491, 725
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	3 cut(s)	381, 408, 503
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	4 cut(s)	139, 265, 514, 649
TaaI	ACNGT	4 cut(s)	214, 418, 679, 769
TaqI	TCGA	7 cut(s)	38, 48, 84, 158, 240, 369, 729
TasI	AATT	6 cut(s)	53, 148, 169, 220, 491, 725
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	2 cut(s)	610, 774
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	2 cut(s)	271, 404
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	3 cut(s)	141, 332, 540
TspGWI	ACGGA	2 cut(s)	343, 762
TspRI	CASTG	2 cut(s)	610, 774
Van91I	CCANNNNNTGG	1 cut(s)	784
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	3 cut(s)	169, 491, 725
XceI	RCATGY	2 cut(s)	185, 556
XhoI	CTCGAG	1 cut(s)	368
XspI	CTAG	3 cut(s)	381, 408, 503
ZrmI	AGTACT	1 cut(s)	501
Zsp2I	ATGCAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.