Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007283

Physical Location & Seq

Genomic Coordinates Forward (+)

2052477 .. 2053600

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g03110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCGACTCTGCAGCTGCCGAGTTGTAGATCTCACGGTCGCTCTTTTCCTCCGTCGTTGATCAGCGCCTCTACCTCTTCCTCTTCCTCCGCGTTTTGGGGCGGACAGATGGCTTTCATCAACGGCCGCCGTTCATCGGTGGAGAAGCTCCGGTACAAAGGTGGCGGAGCGGTTAGGGTTCTTGCGATGTCGGGCGGTTCGTCTTCGTCGTCGTTCAAGATGAACTTGAACGAGTACATGGTCACTCTCGACAAACCGCTCGGGATTCGGTTCGCGCTCTCCGTCGACGGCCGAATCTTCGTCCACGCCCTCAAGAAAGGGGGGAATGCGGAGAAGTCCAGGATAGTAATGGTGGGCGACACATTGAAAAAGGCCGGCGATTTGTCTGCCGGCAGGCTTGCTGAAGCAAGCGACTTTGGTGATACCCAGAAGATGCTGAAGGAGAAAACAGGATCTATTAGCCTGGTTCTTGAGAGACCCCCCTCTCCTTTTCCAATTCAGCAACTGCTTCTTATGAATCGATCTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009987 GO:0012505 GO:0015980 GO:0016020 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0030867 GO:0031090 GO:0031984 GO:0042175 GO:0042578 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046838 GO:0055114 GO:0071704 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901575 GO:2001069

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM DSPc

Protein Analysis

177

Amino Acids

18.9

Weight (kDa)

10.5

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01510 AT3G01510 AT3G01510
fragaria_vesca	FvH4_6g50790 FvH4_6g50790
malus_domestica	MD09G1032300.v1.1
prunus_persica	Prupe.3G285700_v2.0.a1 Prupe.3G285700_v2.0.a1 Prupe.3G285700_v2.0.a1 Prupe.3G285700_v2.0.a1
pyrus_communis	pycom111g02570 pycom17g03110 pycom17g03130
rosa_chinensis	RchiOBHm_Chr2g0172101 RchiOBHm_Chr2g0172181
rosa_laevigata	RLG00000022090
rosa_multiflora	Rmu_ssc0000252.1_g000048
rosa_roxburghii	Rroxscaffold_2G00080100
rosa_rugosa	Rorug02G0556900
rosa_samantha	Rh2AG632400 Rh2BG646000 Rh2CG612600 Rh2DG653400 Rh2DG660600
rosa_wichuraiana	Rw2G052350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	170, 259
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	2 cut(s)	92, 275
AciI	CCGC	8 cut(s)	90, 102, 127, 165, 170, 195, 257, 329
AclWI	GGATC	1 cut(s)	460
AcoI	YGGCCR	2 cut(s)	124, 289
AcuI	CTGAAG	2 cut(s)	423, 458
AfaI	GTAC	2 cut(s)	155, 236
AfiI	CCNNNNNNNGG	2 cut(s)	96, 136
AgsI	TTSAA	3 cut(s)	217, 229, 367
AjnI	CCWGG	2 cut(s)	338, 462
AluBI	AGCT	2 cut(s)	16, 148
AluI	AGCT	2 cut(s)	16, 148
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	460
AlwNI	CAGNNNCTG	1 cut(s)	505
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	3 cut(s)	124, 289, 372
ApeKI	GCWGC	2 cut(s)	13, 16
AspLEI	GCGC	2 cut(s)	68, 277
AsuHPI	GGTGA	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	260
BaeI	ACNNNNGTAYC	2 cut(s)	145, 178
BarI	GAAGNNNNNNTAC	2 cut(s)	137, 169
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	3, 25
BccI	CCATC	1 cut(s)	103
BceAI	ACGGC	3 cut(s)	114, 139, 304
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	2 cut(s)	340, 464
BclI	TGATCA	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	469
BfmI	CTRYAG	1 cut(s)	11
BfoI	RGCGCY	1 cut(s)	69
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	3 cut(s)	14, 17, 127
BlsI	GCNGC	3 cut(s)	15, 18, 128
Bme1390I	CCNGG	2 cut(s)	340, 464
BmeT110I	CYCGRG	1 cut(s)	260
BmrFI	CCNGG	2 cut(s)	340, 464
BmsI	GCATC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	195
BpuEI	CTTGAG	2 cut(s)	296, 491
Bsa29I	ATCGAT	1 cut(s)	520
BsaI	GGTCTC	1 cut(s)	469
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 136
Bse118I	RCCGGY	2 cut(s)	374, 389
BseBI	CCWGG	2 cut(s)	340, 464
BseCI	ATCGAT	1 cut(s)	520
BseLI	CCNNNNNNNGG	2 cut(s)	96, 136
BseX3I	CGGCCG	2 cut(s)	124, 289
BseXI	GCAGC	2 cut(s)	3, 25
Bsh1236I	CGCG	2 cut(s)	92, 275
Bsh1285I	CGRYCG	3 cut(s)	40, 127, 292
BshFI	GGCC	3 cut(s)	126, 291, 374
BshVI	ATCGAT	1 cut(s)	520
BsiEI	CGRYCG	3 cut(s)	40, 127, 292
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	3 cut(s)	151, 375, 390
BslI	CCNNNNNNNGG	2 cut(s)	96, 136
BsmAI	GTCTC	1 cut(s)	469
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	3 cut(s)	126, 291, 374
Bso31I	GGTCTC	1 cut(s)	469
BsoBI	CYCGRG	1 cut(s)	260
Bsp143I	GATC	4 cut(s)	29, 60, 452, 521
BspACI	CCGC	8 cut(s)	90, 102, 127, 165, 170, 195, 257, 329
BspANI	GGCC	3 cut(s)	126, 291, 374
BspDI	ATCGAT	1 cut(s)	520
BspFNI	CGCG	2 cut(s)	92, 275
BspMAI	CTGCAG	1 cut(s)	15
BspPI	GGATC	1 cut(s)	460
BspTNI	GGTCTC	1 cut(s)	469
BsrBI	CCGCTC	2 cut(s)	170, 259
BsrFI	RCCGGY	2 cut(s)	374, 389
BssAI	RCCGGY	2 cut(s)	374, 389
BssMI	GATC	4 cut(s)	29, 60, 452, 521
Bst2UI	CCWGG	2 cut(s)	340, 464
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	2 cut(s)	82, 88
BstC8I	GCNNGC	5 cut(s)	376, 391, 395, 399, 409
BstFNI	CGCG	2 cut(s)	92, 275
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	68, 277
BstKTI	GATC	4 cut(s)	32, 63, 455, 524
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	4 cut(s)	29, 60, 452, 521
BstMCI	CGRYCG	3 cut(s)	40, 127, 292
BstNI	CCWGG	2 cut(s)	340, 464
BstSCI	CCNGG	2 cut(s)	338, 462
BstSFI	CTRYAG	1 cut(s)	11
BstUI	CGCG	2 cut(s)	92, 275
BstV1I	GCAGC	2 cut(s)	3, 25
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	2 cut(s)	29, 452
BstYI	RGATCY	2 cut(s)	29, 452
BstZI	CGGCCG	2 cut(s)	124, 289
Bsu15I	ATCGAT	1 cut(s)	520
BsuRI	GGCC	3 cut(s)	126, 291, 374
BsuTUI	ATCGAT	1 cut(s)	520
BtgZI	GCGATG	1 cut(s)	200
Cac8I	GCNNGC	5 cut(s)	376, 391, 395, 399, 409
CaiI	CAGNNNCTG	1 cut(s)	505
CfoI	GCGC	2 cut(s)	68, 277
Cfr10I	RCCGGY	2 cut(s)	374, 389
ClaI	ATCGAT	1 cut(s)	520
Csp6I	GTAC	2 cut(s)	154, 235
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	8 cut(s)	16, 113, 126, 148, 291, 374, 397, 462
CviKI_1	RGCY	8 cut(s)	16, 113, 126, 148, 291, 374, 397, 462
CviQI	GTAC	2 cut(s)	154, 235
DpnI	GATC	4 cut(s)	31, 62, 454, 523
DpnII	GATC	4 cut(s)	29, 60, 452, 521
EaeI	YGGCCR	2 cut(s)	124, 289
EagI	CGGCCG	2 cut(s)	124, 289
Eam1104I	CTCTTC	2 cut(s)	82, 88
EarI	CTCTTC	2 cut(s)	82, 88
EciI	GGCGGA	2 cut(s)	117, 180
EclXI	CGGCCG	2 cut(s)	124, 289
Eco31I	GGTCTC	1 cut(s)	469
Eco52I	CGGCCG	2 cut(s)	124, 289
Eco57I	CTGAAG	2 cut(s)	423, 458
Eco88I	CYCGRG	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	338, 462
FaeI	CATG	1 cut(s)	241
FaiI	YATR	2 cut(s)	239, 515
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	1 cut(s)	237
FbaI	TGATCA	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	14, 17, 127
Fsp4HI	GCNGC	3 cut(s)	14, 17, 127
GlaI	GCGC	2 cut(s)	67, 276
GluI	GCNGC	3 cut(s)	14, 17, 127
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	126, 291, 374
HapII	CCGG	3 cut(s)	151, 375, 390
HhaI	GCGC	2 cut(s)	68, 277
Hin1II	CATG	1 cut(s)	241
Hin6I	GCGC	2 cut(s)	66, 275
HinP1I	GCGC	2 cut(s)	66, 275
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	4 cut(s)	7, 265, 294, 517
HpaII	CCGG	3 cut(s)	151, 375, 390
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	2 cut(s)	286, 304
Hpy188III	TCNNGA	6 cut(s)	217, 248, 262, 313, 470, 525
Hpy8I	GTNNAC	2 cut(s)	286, 304
Hpy99I	CGWCG	5 cut(s)	58, 211, 214, 287, 290
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	241
HspAI	GCGC	2 cut(s)	66, 275
KroI	GCCGGC	2 cut(s)	374, 389
KroNI	GCCGGC	2 cut(s)	376, 391
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	4 cut(s)	29, 60, 452, 521
LmnI	GCTCC	2 cut(s)	153, 167
Lsp1109I	GCAGC	2 cut(s)	3, 25
LweI	GCATC	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	4 cut(s)	31, 62, 454, 523
MbiI	CCGCTC	2 cut(s)	170, 259
MboI	GATC	4 cut(s)	29, 60, 452, 521
MboII	GAAGA	5 cut(s)	69, 75, 195, 289, 442
MflI	RGATCY	2 cut(s)	29, 452
MluCI	AATT	1 cut(s)	495
MnlI	CCTC	7 cut(s)	60, 79, 85, 91, 97, 320, 493
MroNI	GCCGGC	2 cut(s)	374, 389
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	3 cut(s)	151, 375, 390
MspR9I	CCNGG	2 cut(s)	340, 464
Mva1269I	GAATGC	1 cut(s)	331
MvaI	CCWGG	2 cut(s)	340, 464
MvnI	CGCG	2 cut(s)	92, 275
NaeI	GCCGGC	2 cut(s)	376, 391
NdeII	GATC	4 cut(s)	29, 60, 452, 521
NgoMIV	GCCGGC	2 cut(s)	374, 389
NlaIII	CATG	1 cut(s)	241
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	3 cut(s)	197, 206, 279
PctI	GAATGC	1 cut(s)	331
PdiI	GCCGGC	2 cut(s)	376, 391
PfeI	GAWTC	3 cut(s)	265, 294, 517
PfoI	TCCNGGA	1 cut(s)	338
PkrI	GCNGC	3 cut(s)	15, 18, 128
Psp6I	CCWGG	2 cut(s)	338, 462
PspGI	CCWGG	2 cut(s)	338, 462
PstI	CTGCAG	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	505
PsuI	RGATCY	2 cut(s)	29, 452
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	2 cut(s)	155, 236
RsaNI	GTAC	2 cut(s)	154, 235
SalI	GTCGAC	1 cut(s)	284
SatI	GCNGC	3 cut(s)	14, 17, 127
Sau3AI	GATC	4 cut(s)	29, 60, 452, 521
ScrFI	CCNGG	2 cut(s)	340, 464
SetI	ASST	4 cut(s)	18, 77, 150, 163
SfaNI	GCATC	1 cut(s)	423
SfcI	CTRYAG	1 cut(s)	11
SgrDI	CGTCGACG	1 cut(s)	284
SmlI	CTYRAG	2 cut(s)	311, 470
SmoI	CTYRAG	2 cut(s)	311, 470
Sse9I	AATT	1 cut(s)	495
SsiI	CCGC	8 cut(s)	90, 102, 127, 165, 170, 195, 257, 329
StyD4I	CCNGG	2 cut(s)	338, 462
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	4 cut(s)	249, 285, 520, 526
TasI	AATT	1 cut(s)	495
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	3 cut(s)	265, 294, 517
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	13, 16
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	4 cut(s)	106, 123, 236, 530
TspGWI	ACGGA	2 cut(s)	42, 271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.