Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007283

Physical Location & Seq

Genomic Coordinates Forward (+)

2055004 .. 2056098

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g03130.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGTGGAAAACGGGAAACATGAAGGGCCTCCAACACATGCTGTGACATTTGTATGGAATGGGCAAGAGGGGGAGGACGTAACCTTAGTTGGAGATTTCACCGCGAACTGGAAAGAACCAATTCGGGCAAATTACAAAGGGGGATCACGATGGGAAGCAGAAGTCAGACTTTCACGAGGAAAGTATTACTACAAGTTCATTGTTAATGGGAATTGGCGGCATTCAACATCCTCCCCATCCGAAAGGGATGGAAGTGGAAATGTCAACAATATAATCATCATTGGCGATACTGCCAGCGTGAGACCTTCTGTTCAGCAACCGCAAAAGGATGTGAATATCGTGAAGGTGATTGAGAGGCCATTGACAGAAAACGAGCGCTTCATGCTGGCGAAAGCTGCTCGTTGCGTTTCATTCTCAATATGCCCGATTAGACTAGCTCCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009987 GO:0012505 GO:0015980 GO:0016020 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0030867 GO:0031090 GO:0031984 GO:0042175 GO:0042578 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046838 GO:0055114 GO:0071704 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901575 GO:2001069

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM DSPc

Protein Analysis

149

Amino Acids

16.62

Weight (kDa)

9.2

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01510 AT3G01510 AT3G01510
fragaria_vesca	FvH4_6g50790 FvH4_6g50790
malus_domestica	MD09G1032300.v1.1
prunus_persica	Prupe.3G285700_v2.0.a1 Prupe.3G285700_v2.0.a1 Prupe.3G285700_v2.0.a1 Prupe.3G285700_v2.0.a1
pyrus_communis	pycom111g02570 pycom17g03110 pycom17g03130
rosa_chinensis	RchiOBHm_Chr2g0172101 RchiOBHm_Chr2g0172181
rosa_laevigata	RLG00000022090
rosa_multiflora	Rmu_ssc0000252.1_g000048
rosa_roxburghii	Rroxscaffold_2G00080100
rosa_rugosa	Rorug02G0556900
rosa_samantha	Rh2AG632400 Rh2BG646000 Rh2CG612600 Rh2DG653400 Rh2DG660600
rosa_wichuraiana	Rw2G052350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	104
AciI	CCGC	3 cut(s)	102, 217, 320
AclWI	GGATC	1 cut(s)	151
AfeI	AGCGCT	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	225
AluBI	AGCT	2 cut(s)	395, 437
AluI	AGCT	2 cut(s)	395, 437
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	151
Aor51HI	AGCGCT	1 cut(s)	377
AoxI	GGCC	2 cut(s)	26, 356
ApeKI	GCWGC	1 cut(s)	395
Asp700I	GAANNNNTTC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	91, 358
BauI	CACGAG	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	3 cut(s)	144, 242, 244
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	1 cut(s)	434
BfoI	RGCGCY	1 cut(s)	379
BisI	GCNGC	2 cut(s)	218, 396
BlsI	GCNGC	2 cut(s)	219, 397
BmgT120I	GGNCC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	113
BseGI	GGATG	4 cut(s)	227, 236, 253, 334
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	382
Bsh1236I	CGCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	28, 358
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	28, 358
Bso31I	GGTCTC	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	143
BspACI	CCGC	3 cut(s)	102, 217, 320
BspANI	GGCC	2 cut(s)	28, 358
BspFNI	CGCG	1 cut(s)	104
BspPI	GGATC	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	113
BssMI	GATC	1 cut(s)	143
BssSI	CACGAG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	295, 387
BstDEI	CTNAG	1 cut(s)	85
BstF5I	GGATG	4 cut(s)	227, 236, 253, 334
BstFNI	CGCG	1 cut(s)	104
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 395
BstNSI	RCATGY	1 cut(s)	41
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	28, 358
BtsCI	GGATG	4 cut(s)	227, 236, 253, 334
Cac8I	GCNNGC	2 cut(s)	295, 387
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	26
CviAII	CATG	3 cut(s)	20, 38, 382
CviJI	RGCY	4 cut(s)	28, 358, 395, 437
CviKI_1	RGCY	4 cut(s)	28, 358, 395, 437
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	295
Eco47III	AGCGCT	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	26
FaeI	CATG	3 cut(s)	23, 41, 385
FaiI	YATR	6 cut(s)	21, 39, 55, 272, 383, 421
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	3 cut(s)	19, 37, 381
Fnu4HI	GCNGC	2 cut(s)	218, 396
FokI	GGATG	4 cut(s)	214, 223, 260, 341
Fsp4HI	GCNGC	2 cut(s)	218, 396
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	2 cut(s)	218, 396
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	2 cut(s)	28, 358
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	3 cut(s)	23, 41, 385
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HphI	GGTGA	2 cut(s)	91, 358
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	167, 241
Hpy188III	TCNNGA	3 cut(s)	147, 174, 340
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	3 cut(s)	17, 315, 337
HpyCH4IV	ACGT	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 395
HpyF3I	CTNAG	1 cut(s)	85
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	23, 41, 385
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	3 cut(s)	94, 307, 371
Lsp1109I	GCAGC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	43, 79
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MluCI	AATT	3 cut(s)	120, 130, 211
MmeI	TCCRAC	2 cut(s)	56, 70
MnlI	CCTC	6 cut(s)	39, 61, 67, 170, 241, 348
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	220
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	382, 395
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	3 cut(s)	23, 41, 385
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	41
PctI	GAATGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	219, 397
PspPI	GGNCC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	218, 396
Sau3AI	GATC	1 cut(s)	143
Sau96I	GGNCC	1 cut(s)	26
SetI	ASST	6 cut(s)	81, 86, 307, 348, 397, 439
SmiMI	CAYNNNNRTG	1 cut(s)	52
Sse9I	AATT	3 cut(s)	120, 130, 211
SsiI	CCGC	3 cut(s)	102, 217, 320
SspMI	CTAG	1 cut(s)	434
TaiI	ACGT	1 cut(s)	81
TasI	AATT	3 cut(s)	120, 130, 211
TauI	GCSGC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	4 cut(s)	36, 187, 370, 399
XceI	RCATGY	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.