Rorug02G0556900

Protein of unknown function (DUF1645)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
68361341 .. 68363156
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0556900.1

Sequence Viewer

Length: 294 bp
ATGGCGGGATTGCTAGCATGGGCGGCGGACGTAGTCGGAGCCGGCGGCGGTCAAGGCAACGAAGACGACAATCCCACTGATATTCACACCGGAGCAGCAAAACAGGAAATGGAGGACACTGAACAGAATTTGGGAGATGAACTGGAAAATGCACAAAAGACACTGAATGCCAGTCAATCTCGCAGATCAGATGGCGACTCCAAAACAACTGCTGAAACTGGAGATGGCATAGAATCATCAAAGAAAGCTATACTAGACAAGTTAGAGGAGGGGAAAATAGATTTCGTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

10.12

Weight (kDa)

4.21

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 5, 23, 26, 45, 48
AcsI RAATTY 1 cut(s) 127
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 127
AsuNHI GCTAGC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 107
BccI CCATC 2 cut(s) 185, 218
BfaI CTAG 2 cut(s) 14, 254
BisI GCNGC 3 cut(s) 24, 46, 96
BlsI GCNGC 3 cut(s) 25, 47, 97
BmiI GGNNCC 1 cut(s) 40
BmtI GCTAGC 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 240
BsaWI WCCGGW 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 3 cut(s) 147, 171, 223
BseNI ACTGG 3 cut(s) 147, 171, 223
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 107
BsiSI CCGG 2 cut(s) 42, 90
BsmI GAATGC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 185
BspACI CCGC 5 cut(s) 5, 23, 26, 45, 48
BspLI GGNNCC 1 cut(s) 40
BspOI GCTAGC 1 cut(s) 17
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 3 cut(s) 147, 171, 223
BssAI RCCGGY 1 cut(s) 41
BssMI GATC 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 15, 43
BstKTI GATC 1 cut(s) 188
BstMBI GATC 1 cut(s) 185
BstMWI GCNNNNNNNGC 2 cut(s) 23, 54
BstV1I GCAGC 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 69
BtsIMutI CAGTG 3 cut(s) 75, 117, 161
Cac8I GCNNGC 2 cut(s) 15, 43
Cfr10I RCCGGY 1 cut(s) 41
CviAII CATG 1 cut(s) 18
CviJI RGCY 2 cut(s) 41, 248
CviKI_1 RGCY 2 cut(s) 41, 248
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
EciI GGCGGA 1 cut(s) 41
FaeI CATG 1 cut(s) 21
FaiI YATR 3 cut(s) 19, 230, 251
FatI CATG 1 cut(s) 17
Fnu4HI GCNGC 3 cut(s) 24, 46, 96
Fsp4HI GCNGC 3 cut(s) 24, 46, 96
FspBI CTAG 2 cut(s) 14, 254
GluI GCNGC 3 cut(s) 24, 46, 96
GsuI CTGGAG 1 cut(s) 240
HapII CCGG 2 cut(s) 42, 90
Hin1II CATG 1 cut(s) 21
HinfI GANTC 2 cut(s) 197, 233
HpaII CCGG 2 cut(s) 42, 90
Hpy188I TCNGA 2 cut(s) 38, 190
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 54
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 1 cut(s) 21
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Kzo9I GATC 1 cut(s) 185
LmnI GCTCC 2 cut(s) 38, 92
LpnPI CCDG 6 cut(s) 55, 89, 103, 128, 184, 204
Lsp1109I GCAGC 1 cut(s) 107
MaeI CTAG 2 cut(s) 14, 254
MaeII ACGT 1 cut(s) 30
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MboII GAAGA 1 cut(s) 74
MluCI AATT 1 cut(s) 127
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 3 cut(s) 106, 259, 262
MroNI GCCGGC 1 cut(s) 41
MspI CCGG 2 cut(s) 42, 90
Mva1269I GAATGC 1 cut(s) 172
MwoI GCNNNNNNNGC 2 cut(s) 23, 54
NaeI GCCGGC 1 cut(s) 43
NdeII GATC 1 cut(s) 185
NgoMIV GCCGGC 1 cut(s) 41
NheI GCTAGC 1 cut(s) 13
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 1 cut(s) 40
PctI GAATGC 1 cut(s) 172
PdiI GCCGGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 233
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 3 cut(s) 25, 47, 97
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 40
PsyI GACNNNGTC 1 cut(s) 32
SatI GCNGC 3 cut(s) 24, 46, 96
Sau3AI GATC 1 cut(s) 185
SchI GAGTC 1 cut(s) 191
SetI ASST 2 cut(s) 33, 250
Sse9I AATT 1 cut(s) 127
SsiI CCGC 5 cut(s) 5, 23, 26, 45, 48
SspMI CTAG 2 cut(s) 14, 254
TaiI ACGT 1 cut(s) 33
TasI AATT 1 cut(s) 127
TauI GCSGC 2 cut(s) 26, 48
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 3 cut(s) 82, 124, 168
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 3 cut(s) 82, 124, 168
Tth111I GACNNNGTC 1 cut(s) 32
XapI RAATTY 1 cut(s) 127
XspI CTAG 2 cut(s) 14, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.