Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007283

Physical Location & Seq

Genomic Coordinates Reverse (-)

80318582 .. 80322915

Gene Structure 4334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G052350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGCTTCTGAAGGGAGGCTTATTGAGACCAAGGACTTCGGTGATACACATCTTTGGTTTCTTCAGGAAGATGCTGAAGGAGAAGACAGGATCTTATAGTCTTGTTCTTGAGAGGCCATTTTCTCCCTTTCCAATTCAACAGCTGCTTCTTATGAATGATCTTGATAATCTATTCAATAGAGGTCGAGTTCCTTTTGCAACTTGGAACAACAGTGTATTGGCTTCAAATTTGCAATCATCTGCTGGAAGCAGTGGCAATTCTGGTTTTGTCACGTTCTCCTCAAAGTTTCTAAAACCACAAGGATGGAATTCCTTGAATGGAAATGGTCATGTTCAACCAACAGTGCAGAGGAACACTACTGCCAAACCCATAAGCCAACTGGTTTGTATTCTGTCTGAAGAGGAGCCTGGAGATGGAGAATGGGCTTACGGAAATTTTCCACTAGAAGAATATATTAAAGCACTGGATCGCTCAAAAGGCGAATTATATTATGATCACTCACTTGGTATGCGCTATAGTAAGATAACAGAGCAAATATATGTCGGGTCATGTATACAAACAGAAGATGATGTGGAGGCATTGTCAAATGCTGCAGGAATTACTGCTATACTAAATTTTCAAACTGGAACCGAGACACAAAACTGGGGAATCAATTCCAATTCAATAAACGAGTCATGTCAGAAGTTCGATATTCTGATGATCAACTATCCAATAAGGGATGGAGATTCTTTTGATTTGAGGAAGAAACTACCTTTTTGTGTGGGGCTATTATTACGTTTATTGAAAAAGAATCATCATGTTTATGTCACTTGTACCAGTGGTTTTGATCGATCTCCTACTTGCGTGATAGCATACTTGCATTGGATGACTGATACTTCCCTTCATGCAGCGTATAATTTTGTTACTGGGTTGCATTTATGTAGGCCTGACAGACCGGCAATTGCTTGGGCAACATGGGATCTTATAGCCATGGTGGAAAAAGGTAAACATGATGGACCTGCAACACATGCTGTCACATTTGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTCACAAATAATTGGAAAGATCCAATTCGGGCAAATCACAAAGGTGGATCACGATCGGAAGTGGAAGTTAGACTTTCACAAGGAAAGTATTACTACAAGTTCATTGTCAATGGGCAATGGCGACATTCAACATCCTCCCCAGCTGAAAGGGATAACAGCGGGAATGTCAACAATGTAATCGTAATCGGTGATACAGCCAGTGTGAGACCTTCTGTTCAACAACAGCAAAAAGATGCAAATATTATCAAGGTGATTGAGAGACCGTTGACAGAAAATGAGCGCTTCATGCTGGCAAAAGCAGCTCGTTGTGTTGCATTTTCTATATGCCCCATTAGATTGGCTCCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009987 GO:0012505 GO:0015980 GO:0016020 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0030867 GO:0031090 GO:0031984 GO:0042175 GO:0042578 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046838 GO:0055114 GO:0071704 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901575 GO:2001069

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM DSPc

Protein Analysis

471

Amino Acids

52.79

Weight (kDa)

8.6

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	180 - 308	1.1e-10	Dual specificity phosphatase, catalytic domain
AMPK1_CBM	PF16561	338 - 419	1.7e-19	Glycogen recognition site of AMP-activated protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01510 AT3G01510 AT3G01510
fragaria_vesca	FvH4_6g50790 FvH4_6g50790
malus_domestica	MD09G1032300.v1.1
prunus_persica	Prupe.3G285700_v2.0.a1 Prupe.3G285700_v2.0.a1 Prupe.3G285700_v2.0.a1 Prupe.3G285700_v2.0.a1
pyrus_communis	pycom111g02570 pycom17g03110 pycom17g03130
rosa_chinensis	RchiOBHm_Chr2g0172101 RchiOBHm_Chr2g0172181
rosa_laevigata	RLG00000022090
rosa_multiflora	Rmu_ssc0000252.1_g000048
rosa_roxburghii	Rroxscaffold_2G00080100
rosa_rugosa	Rorug02G0556900
rosa_samantha	Rh2AG632400 Rh2BG646000 Rh2CG612600 Rh2DG653400 Rh2DG660600
rosa_wichuraiana	Rw2G052350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1006
AccI	GTMKAC	1 cut(s)	553
AciI	CCGC	1 cut(s)	1224
AclWI	GGATC	5 cut(s)	97, 474, 966, 1079, 1120
AcsI	RAATTY	5 cut(s)	226, 307, 433, 613, 1051
AcuI	CTGAAG	4 cut(s)	29, 46, 95, 417
AfaI	GTAC	1 cut(s)	814
AfeI	AGCGCT	1 cut(s)	1346
AfiI	CCNNNNNNNGG	1 cut(s)	413
AjnI	CCWGG	1 cut(s)	406
AleI	CACNNNNGTG	1 cut(s)	1107
AluBI	AGCT	3 cut(s)	142, 1208, 1367
AluI	AGCT	3 cut(s)	142, 1208, 1367
Alw26I	GTCTC	4 cut(s)	19, 626, 1264, 1318
AlwI	GGATC	5 cut(s)	97, 474, 966, 1079, 1120
Aor51HI	AGCGCT	1 cut(s)	1346
AoxI	GGCC	2 cut(s)	113, 923
ApeKI	GCWGC	4 cut(s)	142, 590, 887, 1364
ApoI	RAATTY	5 cut(s)	226, 307, 433, 613, 1051
Asp700I	GAANNNNTTC	1 cut(s)	652
AspLEI	GCGC	2 cut(s)	513, 1347
AspS9I	GGNCC	1 cut(s)	995
AsuHPI	GGTGA	3 cut(s)	52, 1265, 1327
AvaII	GGWCC	1 cut(s)	995
BbsI	GAAGAC	1 cut(s)	89
BbvI	GCAGC	4 cut(s)	129, 577, 899, 1376
BccI	CCATC	4 cut(s)	297, 407, 713, 986
BciT130I	CCWGG	1 cut(s)	408
BclI	TGATCA	2 cut(s)	493, 699
BcoDI	GTCTC	4 cut(s)	19, 626, 1264, 1318
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	2 cut(s)	514, 591
BfoI	RGCGCY	1 cut(s)	1348
BfuAI	ACCTGC	1 cut(s)	1006
BisI	GCNGC	4 cut(s)	143, 591, 888, 1365
BlsI	GCNGC	4 cut(s)	144, 592, 889, 1366
Bme1390I	CCNGG	1 cut(s)	408
Bme18I	GGWCC	1 cut(s)	995
BmgT120I	GGNCC	1 cut(s)	995
BmiI	GGNNCC	3 cut(s)	405, 628, 1407
BmrFI	CCNGG	1 cut(s)	408
BmrI	ACTGGG	2 cut(s)	652, 915
BmsI	GCATC	2 cut(s)	60, 1288
BmuI	ACTGGG	2 cut(s)	652, 915
BpiI	GAAGAC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	128
Bsa29I	ATCGAT	1 cut(s)	829
BsaBI	GATNNNNATC	2 cut(s)	47, 1117
BsaI	GGTCTC	3 cut(s)	19, 1264, 1318
BsaJI	CCNNGG	2 cut(s)	29, 969
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse118I	RCCGGY	1 cut(s)	934
Bse1I	ACTGG	7 cut(s)	384, 468, 628, 647, 816, 910, 1263
Bse3DI	GCAATG	1 cut(s)	1187
Bse8I	GATNNNNATC	2 cut(s)	47, 1117
BseBI	CCWGG	1 cut(s)	408
BseCI	ATCGAT	1 cut(s)	829
BseDI	CCNNGG	2 cut(s)	29, 969
BseGI	GGATG	5 cut(s)	308, 724, 870, 1051, 1196
BseJI	GATNNNNATC	2 cut(s)	47, 1117
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMI	GCAATG	1 cut(s)	1187
BseNI	ACTGG	7 cut(s)	384, 468, 628, 647, 816, 910, 1263
BseRI	GAGGAG	2 cut(s)	268, 416
BseXI	GCAGC	4 cut(s)	129, 577, 899, 1376
BseYI	CCCAGC	1 cut(s)	1204
BsgI	GTGCAG	1 cut(s)	365
Bsh1285I	CGRYCG	1 cut(s)	1121
BshFI	GGCC	2 cut(s)	115, 925
BshVI	ATCGAT	1 cut(s)	829
BsiEI	CGRYCG	1 cut(s)	1121
BsiSI	CCGG	1 cut(s)	935
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	4 cut(s)	19, 626, 1264, 1318
BsnI	GGCC	2 cut(s)	115, 925
Bso31I	GGTCTC	3 cut(s)	19, 1264, 1318
Bsp19I	CCATGG	1 cut(s)	969
BspACI	CCGC	1 cut(s)	1224
BspANI	GGCC	2 cut(s)	115, 925
BspDI	ATCGAT	1 cut(s)	829
BspLI	GGNNCC	3 cut(s)	405, 628, 1407
BspMAI	CTGCAG	1 cut(s)	595
BspMI	ACCTGC	1 cut(s)	1006
BspPI	GGATC	5 cut(s)	97, 474, 966, 1079, 1120
BspTNI	GGTCTC	3 cut(s)	19, 1264, 1318
BsrDI	GCAATG	1 cut(s)	1187
BsrFI	RCCGGY	1 cut(s)	934
BsrI	ACTGG	7 cut(s)	384, 468, 628, 647, 816, 910, 1263
BssAI	RCCGGY	1 cut(s)	934
BssECI	CCNNGG	2 cut(s)	29, 969
BssNAI	GTATAC	1 cut(s)	554
BssT1I	CCWWGG	2 cut(s)	29, 969
Bst1107I	GTATAC	1 cut(s)	554
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	3 cut(s)	212, 343, 1329
Bst6I	CTCTTC	1 cut(s)	393
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstC8I	GCNNGC	1 cut(s)	1356
BstDSI	CCRYGG	1 cut(s)	969
BstF5I	GGATG	5 cut(s)	308, 724, 870, 1051, 1196
BstH2I	RGCGCY	1 cut(s)	1348
BstHHI	GCGC	2 cut(s)	513, 1347
BstMAI	GTCTC	4 cut(s)	19, 626, 1264, 1318
BstMCI	CGRYCG	1 cut(s)	1121
BstMWI	GCNNNNNNNGC	4 cut(s)	477, 1007, 1351, 1364
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	1010
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	2 cut(s)	514, 591
BstV1I	GCAGC	4 cut(s)	129, 577, 899, 1376
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	3 cut(s)	89, 958, 1084
BstXI	CCANNNNNNTGG	2 cut(s)	303, 1402
BstYI	RGATCY	3 cut(s)	89, 958, 1084
BstZ17I	GTATAC	1 cut(s)	554
Bsu15I	ATCGAT	1 cut(s)	829
BsuRI	GGCC	2 cut(s)	115, 925
BsuTUI	ATCGAT	1 cut(s)	829
BtgI	CCRYGG	1 cut(s)	969
BtsCI	GGATG	5 cut(s)	308, 724, 870, 1051, 1196
BtsI	GCAGTG	1 cut(s)	256
BtsIMutI	CAGTG	6 cut(s)	217, 256, 348, 461, 823, 1270
BveI	ACCTGC	1 cut(s)	1006
Cac8I	GCNNGC	1 cut(s)	1356
CfoI	GCGC	2 cut(s)	513, 1347
Cfr10I	RCCGGY	1 cut(s)	934
Cfr13I	GGNCC	1 cut(s)	995
ClaI	ATCGAT	1 cut(s)	829
Csp6I	GTAC	1 cut(s)	813
CviQI	GTAC	1 cut(s)	813
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco130I	CCWWGG	2 cut(s)	29, 969
Eco147I	AGGCCT	1 cut(s)	925
Eco31I	GGTCTC	3 cut(s)	19, 1264, 1318
Eco47I	GGWCC	1 cut(s)	995
Eco47III	AGCGCT	1 cut(s)	1346
Eco57I	CTGAAG	4 cut(s)	29, 46, 95, 417
EcoRI	GAATTC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	2 cut(s)	29, 969
ErhI	CCWWGG	2 cut(s)	29, 969
FalI	AAGNNNNNCTT	3 cut(s)	34, 1122, 1154
FauI	CCCGC	1 cut(s)	1217
FbaI	TGATCA	2 cut(s)	493, 699
FblI	GTMKAC	1 cut(s)	553
Fnu4HI	GCNGC	4 cut(s)	143, 591, 888, 1365
FokI	GGATG	5 cut(s)	315, 731, 877, 1058, 1183
Fsp4HI	GCNGC	4 cut(s)	143, 591, 888, 1365
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	2 cut(s)	512, 1346
GluI	GCNGC	4 cut(s)	143, 591, 888, 1365
GsaI	CCCAGC	1 cut(s)	1208
GsuI	CTGGAG	1 cut(s)	429
HaeII	RGCGCY	1 cut(s)	1348
HaeIII	GGCC	2 cut(s)	115, 925
HapII	CCGG	1 cut(s)	935
HhaI	GCGC	2 cut(s)	513, 1347
Hin6I	GCGC	2 cut(s)	511, 1345
HinP1I	GCGC	2 cut(s)	511, 1345
HincII	GTYRAC	2 cut(s)	1234, 1332
HindII	GTYRAC	2 cut(s)	1234, 1332
HinfI	GANTC	4 cut(s)	648, 671, 725, 790
HpaII	CCGG	1 cut(s)	935
HphI	GGTGA	3 cut(s)	52, 1265, 1327
Hpy166II	GTNNAC	4 cut(s)	554, 986, 1234, 1332
Hpy188I	TCNGA	5 cut(s)	9, 397, 681, 696, 1123
Hpy188III	TCNNGA	4 cut(s)	64, 107, 161, 1116
Hpy8I	GTNNAC	4 cut(s)	554, 986, 1234, 1332
HpyAV	CCTTC	4 cut(s)	4, 70, 890, 1284
HpyCH4III	ACNGT	3 cut(s)	212, 343, 1329
HpyCH4IV	ACGT	2 cut(s)	272, 775
HpyF10VI	GCNNNNNNNGC	4 cut(s)	477, 1007, 1351, 1364
HpySE526I	ACGT	2 cut(s)	272, 775
HspAI	GCGC	2 cut(s)	511, 1345
Ksp22I	TGATCA	2 cut(s)	493, 699
LmnI	GCTCC	2 cut(s)	403, 1411
Lsp1109I	GCAGC	4 cut(s)	129, 577, 899, 1376
LweI	GCATC	2 cut(s)	60, 1288
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	2 cut(s)	272, 775
MaeIII	GTNAC	4 cut(s)	268, 805, 901, 1012
MboII	GAAGA	7 cut(s)	52, 79, 94, 410, 458, 575, 754
MfeI	CAATTG	1 cut(s)	939
MflI	RGATCY	3 cut(s)	89, 958, 1084
MlyI	GAGTC	1 cut(s)	680
MmeI	TCCRAC	1 cut(s)	1039
MroXI	GAANNNNTTC	1 cut(s)	652
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	4 cut(s)	301, 801, 1021, 1107
MspA1I	CMGCKG	3 cut(s)	142, 1208, 1224
MspI	CCGG	1 cut(s)	935
MspR9I	CCNGG	1 cut(s)	408
MunI	CAATTG	1 cut(s)	939
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	4 cut(s)	477, 1007, 1351, 1364
NcoI	CCATGG	1 cut(s)	969
NlaIV	GGNNCC	3 cut(s)	405, 628, 1407
NmuCI	GTSAC	3 cut(s)	268, 805, 1012
NspI	RCATGY	1 cut(s)	1010
OliI	CACNNNNGTG	1 cut(s)	1107
PceI	AGGCCT	1 cut(s)	925
PdmI	GAANNNNTTC	1 cut(s)	652
PfeI	GAWTC	3 cut(s)	648, 725, 790
PkrI	GCNGC	4 cut(s)	144, 592, 889, 1366
Ple19I	CGATCG	1 cut(s)	1121
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
Psp6I	CCWGG	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	1204
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	3 cut(s)	405, 628, 1407
PspPI	GGNCC	1 cut(s)	995
PstI	CTGCAG	1 cut(s)	595
PsuI	RGATCY	3 cut(s)	89, 958, 1084
PvuI	CGATCG	1 cut(s)	1121
PvuII	CAGCTG	2 cut(s)	142, 1208
RsaI	GTAC	1 cut(s)	814
RsaNI	GTAC	1 cut(s)	813
RseI	CAYNNNNRTG	4 cut(s)	301, 801, 1021, 1107
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	4 cut(s)	143, 591, 888, 1365
Sau96I	GGNCC	1 cut(s)	995
SchI	GAGTC	1 cut(s)	680
ScrFI	CCNGG	1 cut(s)	408
SfaNI	GCATC	2 cut(s)	60, 1288
SfcI	CTRYAG	2 cut(s)	514, 591
SinI	GGWCC	1 cut(s)	995
SmiMI	CAYNNNNRTG	4 cut(s)	301, 801, 1021, 1107
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SseBI	AGGCCT	1 cut(s)	925
SsiI	CCGC	1 cut(s)	1224
SspI	AATATT	1 cut(s)	1306
SspMI	CTAG	1 cut(s)	443
StuI	AGGCCT	1 cut(s)	925
StyD4I	CCNGG	1 cut(s)	406
StyI	CCWWGG	2 cut(s)	29, 969
TaaI	ACNGT	3 cut(s)	212, 343, 1329
TaiI	ACGT	2 cut(s)	275, 778
TaqI	TCGA	3 cut(s)	184, 687, 829
TfiI	GAWTC	3 cut(s)	648, 725, 790
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	6 cut(s)	217, 256, 348, 468, 823, 1270
TseFI	GTSAC	3 cut(s)	268, 805, 1012
TseI	GCWGC	4 cut(s)	142, 590, 887, 1364
Tsp45I	GTSAC	3 cut(s)	268, 805, 1012
TspDTI	ATGAA	4 cut(s)	167, 872, 1156, 1339
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	6 cut(s)	217, 256, 348, 468, 823, 1270
VpaK11BI	GGWCC	1 cut(s)	995
XapI	RAATTY	5 cut(s)	226, 307, 433, 613, 1051
XceI	RCATGY	1 cut(s)	1010
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	553
XmnI	GAANNNNTTC	1 cut(s)	652
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.