Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007283

Physical Location & Seq

Genomic Coordinates Reverse (-)

85601505 .. 85603931

Gene Structure 2427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53940

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGACTGATACTTCCCTTCATGCAGCGTATAATTTTGTTACTGGGTTGCATTTGTGTAGGCCTGACAGACCGGCAATTGCTTGGGCAACATGGGATCTTATAGCCATGGTGGAAAAAGGTAAACATGATGGACCTGCAACACATGCTGTCACATTTGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTCACGAATAATTGGAAAGATCCAATTCGGGCAAATCACAAAGGTGGATCACGATCGGAAGCGGAAGTTAGACTTTCACAAGGAAAGTATTACTACAAGTTCATTGTCAATGGGCAATGGCGACATTCAACATCCTCCCCAGCTGAAAGGGATGACAGCGGGAATGTCAACAATGTAATTGTAATCGGTGATACAGCCAGTGTGAGACCTTCTGTTCAACAACAGCAAAAAGATGCAAATATTATCAAGGTGATTGAGAGACCGTTGACAGAAAATGAGCGCTTCATGCTGGCAAAAGCAGCTCGTTGTGTTGCATTTTCTATATGCCCTATTAGACTGGCTCCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009987 GO:0012505 GO:0015980 GO:0016020 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0030867 GO:0031090 GO:0031984 GO:0042175 GO:0042578 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046838 GO:0055114 GO:0071704 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901575 GO:2001069

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM DSPc

Protein Analysis

183

Amino Acids

20.42

Weight (kDa)

8.45

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	50 - 131	3.9e-20	Glycogen recognition site of AMP-activated protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0007283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01510 AT3G01510 AT3G01510
fragaria_vesca	FvH4_6g50790 FvH4_6g50790
malus_domestica	MD09G1032300.v1.1
prunus_persica	Prupe.3G285700_v2.0.a1 Prupe.3G285700_v2.0.a1 Prupe.3G285700_v2.0.a1 Prupe.3G285700_v2.0.a1
pyrus_communis	pycom111g02570 pycom17g03110 pycom17g03130
rosa_chinensis	RchiOBHm_Chr2g0172101 RchiOBHm_Chr2g0172181
rosa_laevigata	RLG00000022090
rosa_multiflora	Rmu_ssc0000252.1_g000048
rosa_roxburghii	Rroxscaffold_2G00080100
rosa_rugosa	Rorug02G0556900
rosa_samantha	Rh2AG632400 Rh2BG646000 Rh2CG612600 Rh2DG653400 Rh2DG660600
rosa_wichuraiana	Rw2G052350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	142
AciI	CCGC	2 cut(s)	263, 360
AclWI	GGATC	3 cut(s)	102, 215, 256
AcsI	RAATTY	1 cut(s)	187
AfeI	AGCGCT	1 cut(s)	482
AgsI	TTSAA	2 cut(s)	330, 419
AleI	CACNNNNGTG	1 cut(s)	243
AluBI	AGCT	2 cut(s)	344, 503
AluI	AGCT	2 cut(s)	344, 503
Alw26I	GTCTC	2 cut(s)	400, 454
AlwI	GGATC	3 cut(s)	102, 215, 256
Aor51HI	AGCGCT	1 cut(s)	482
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	2 cut(s)	23, 500
ApoI	RAATTY	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	401, 463
AvaII	GGWCC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	35, 512
BccI	CCATC	1 cut(s)	122
BcoDI	GTCTC	2 cut(s)	400, 454
BfoI	RGCGCY	1 cut(s)	484
BfuAI	ACCTGC	1 cut(s)	142
BisI	GCNGC	2 cut(s)	24, 501
BlsI	GCNGC	2 cut(s)	25, 502
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	543
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	424
BmuI	ACTGGG	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	253
BsaI	GGTCTC	2 cut(s)	400, 454
BsaJI	CCNNGG	1 cut(s)	105
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	3 cut(s)	46, 399, 543
Bse3DI	GCAATG	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	3 cut(s)	187, 332, 358
BseJI	GATNNNNATC	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	323
BseNI	ACTGG	3 cut(s)	46, 399, 543
BseXI	GCAGC	2 cut(s)	35, 512
BseYI	CCCAGC	1 cut(s)	340
Bsh1285I	CGRYCG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	61
BsiEI	CGRYCG	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	71
BsmAI	GTCTC	2 cut(s)	400, 454
BsnI	GGCC	1 cut(s)	61
Bso31I	GGTCTC	2 cut(s)	400, 454
Bsp143I	GATC	4 cut(s)	94, 220, 248, 254
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	2 cut(s)	263, 360
BspANI	GGCC	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	543
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	3 cut(s)	102, 215, 256
BspTNI	GGTCTC	2 cut(s)	400, 454
BsrDI	GCAATG	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	3 cut(s)	46, 399, 543
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	4 cut(s)	94, 220, 248, 254
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	465
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	492
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	3 cut(s)	187, 332, 358
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	4 cut(s)	97, 223, 251, 257
BstMAI	GTCTC	2 cut(s)	400, 454
BstMBI	GATC	4 cut(s)	94, 220, 248, 254
BstMCI	CGRYCG	1 cut(s)	257
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 487, 500
BstNSI	RCATGY	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	35, 512
BstX2I	RGATCY	2 cut(s)	94, 220
BstYI	RGATCY	2 cut(s)	94, 220
BsuRI	GGCC	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	3 cut(s)	187, 332, 358
BtsIMutI	CAGTG	1 cut(s)	406
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	492
CfoI	GCGC	1 cut(s)	483
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	131
CviAII	CATG	6 cut(s)	20, 90, 106, 125, 143, 487
CviJI	RGCY	6 cut(s)	61, 104, 344, 398, 503, 542
CviKI_1	RGCY	6 cut(s)	61, 104, 344, 398, 503, 542
DpnI	GATC	4 cut(s)	96, 222, 250, 256
DpnII	GATC	4 cut(s)	94, 220, 248, 254
Eco130I	CCWWGG	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	61
Eco31I	GGTCTC	2 cut(s)	400, 454
Eco47I	GGWCC	1 cut(s)	131
Eco47III	AGCGCT	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	6 cut(s)	23, 93, 109, 128, 146, 490
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	6 cut(s)	19, 89, 105, 124, 142, 486
FauI	CCCGC	1 cut(s)	353
Fnu4HI	GCNGC	2 cut(s)	24, 501
FokI	GGATG	3 cut(s)	194, 319, 365
Fsp4HI	GCNGC	2 cut(s)	24, 501
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	2 cut(s)	24, 501
GsaI	CCCAGC	1 cut(s)	344
HaeII	RGCGCY	1 cut(s)	484
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	6 cut(s)	23, 93, 109, 128, 146, 490
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HincII	GTYRAC	2 cut(s)	370, 468
HindII	GTYRAC	2 cut(s)	370, 468
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	2 cut(s)	401, 463
Hpy166II	GTNNAC	3 cut(s)	122, 370, 468
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	2 cut(s)	205, 252
Hpy8I	GTNNAC	3 cut(s)	122, 370, 468
HpyAV	CCTTC	2 cut(s)	26, 420
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4V	TGCA	5 cut(s)	23, 49, 137, 437, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 487, 500
Hsp92II	CATG	6 cut(s)	23, 93, 109, 128, 146, 490
HspAI	GCGC	1 cut(s)	481
Kzo9I	GATC	4 cut(s)	94, 220, 248, 254
LmnI	GCTCC	1 cut(s)	547
LpnPI	CCDG	8 cut(s)	27, 75, 84, 147, 354, 412, 476, 524
Lsp1109I	GCAGC	2 cut(s)	35, 512
LweI	GCATC	1 cut(s)	424
MaeIII	GTNAC	2 cut(s)	37, 148
MalI	GATC	4 cut(s)	96, 222, 250, 256
MboI	GATC	4 cut(s)	94, 220, 248, 254
MfeI	CAATTG	1 cut(s)	75
MflI	RGATCY	2 cut(s)	94, 220
MluCI	AATT	6 cut(s)	31, 75, 187, 211, 225, 378
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	3 cut(s)	166, 172, 346
MslI	CAYNNNNRTG	2 cut(s)	157, 243
MspA1I	CMGCKG	2 cut(s)	344, 360
MspI	CCGG	1 cut(s)	71
MunI	CAATTG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	143, 487, 500
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	4 cut(s)	94, 220, 248, 254
NlaIII	CATG	6 cut(s)	23, 93, 109, 128, 146, 490
NlaIV	GGNNCC	1 cut(s)	543
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	146
OliI	CACNNNNGTG	1 cut(s)	243
PceI	AGGCCT	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	25, 502
Ple19I	CGATCG	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	543
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	94, 220
PvuI	CGATCG	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	344
RseI	CAYNNNNRTG	2 cut(s)	157, 243
SatI	GCNGC	2 cut(s)	24, 501
Sau3AI	GATC	4 cut(s)	94, 220, 248, 254
Sau96I	GGNCC	1 cut(s)	131
SetI	ASST	7 cut(s)	121, 136, 247, 346, 412, 453, 505
SfaNI	GCATC	1 cut(s)	424
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	157, 243
Sse9I	AATT	6 cut(s)	31, 75, 187, 211, 225, 378
SseBI	AGGCCT	1 cut(s)	61
SsiI	CCGC	2 cut(s)	263, 360
SspI	AATATT	1 cut(s)	442
StuI	AGGCCT	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	465
TasI	AATT	6 cut(s)	31, 75, 187, 211, 225, 378
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	23, 500
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	8, 292, 475
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.