Rh2CG612600

Phosphoglucan phosphatase LSF1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
79003715 .. 79007713
3999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG612600.1

Sequence Viewer

Length: 1758 bp
ATGTTCACTCTGCAACTTCCGAGTTGCAGAGCTCTCGATCGCTCGCCGCGGCCATTTCTCGGCGGCGGCTCCTCGTTTTGGGGGACGGCGGTCATCAATTTCAATGGCAGATCCACGGCGGAGAAGAAGCTCCGGTTCGACGGAAGGACGGTCAGGATCGTGGCGATGTCGTCGTGGAGCAGCAACAACACTTTCAAGATGAACTTGAACGAGTACATGGTCACTCTCGAGAAGCCGCTCGGAATCCGCTTCGCGCTCTCCGTCGACGGCAGAATCTTCGTCCATGCTCTCAAGAAAGGGGGGAATGCGGAGAAGTCCAGGATAGTAATGGTGGGCGACACTTTGAAAAAGGCGGGTAATTCGTCTGAAGGGAGGCTTATTGAGACCAAGGACTTCGGTGATACACAGAAGATGCTGAAGGAGAAGACAGGATCTTATAGTCTTGTTCTTGAGAGGCCATTTTCTCCCTTTCCAATTCAACAGCTGCTTCTTATGAATGATCTTGATAATCTATTCAATAGAGGTCGAGTTCCTTTTGCAACTTGGAACAACAGTGTATTGGCTTCAAATTTGCAATCATCTGCTGGAAGCAGTGGCAATTCTGGTTTTGTCACGTTCTCCTCAAAGTTTCTAAAACCACAAGGATGGAATTCCTTGAATGGAAATGGTCATGTTCAACCAACAGTGCAGAGGAACACTACTGCCAAACCCATAAGCCAACTGGTTTGTATTCTGTCTGAAGAGGAGCCTGGAGATGGAGAATGGGCTTACGGAAATTTTCCACTAGAAGAATATATTAAAGCACTGGATCGCTCAAAAGGCGAATTATATTATGATCACTCACTTGGTATGCGCTATAGTAAGATAACGGAGCAAATATATGTCGGGTCATGTATACAAACAGAAGATGATGTGGAGGCATTGTCAAATGCTGCAGGAATTACTGCTATACTAAATTTTCAAACTGGAACCGAGACACAAAACTGGGGAATCAATTCCAATTCAATAAACGAGTCATGTCAGAAGTTCGATATTCTGATGATCAACTATCCAATAAGGGATGGAGATTCTTTTGATTTGAGGAAGAAACTACCTTTTTGTGTGGGGCTATTATTACGTTTATTGAAAAAGAATCATCGTGTTTATGTCACTTGTACCAGTGGTTTTGATCGATCTCCTACTTGCGTGATAGCATACTTGCATTGGATGACTGATACTTCCCTTCATGCAGCGTATAATTTTGTTACTGGGTTGCATTTATGTAGGCCTGACAGACCGGCAATTGCTTGGGCAACATGGGATCTTATAGCCATGGTGGAAAAAGGTAAACATGATGGACCTGCAACACATGCTGTCACATTTGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTCACAAATAATTGGAAAGATCCAATTCGGGCAAATCACAAAGGTGGATCACGATCGGAAGTGGAAGTTAGACTTTCACAAGGAAAGTATTACTACAAGTTCATTGTCAATGGGCAATGGCGACATTCAACATCCTCCCCAGCTGAAAGGGATAACAGCGGGAATGTCAACAATGTAATCGTAATCGGTGATACAGCCAGTGTGAGACCTTCTGTTCAACAACAGCAAAAAGATGCAAATATTATCAAGGTGATTGAGAGACCGTTGACAGAAAATGAGCGCTTCATGCTGGCAAAAGCAGCTCGTTGTGTTGCATTTTCTATATGCCCCATTAGATTGGCTCCAAAGTAA

Protein Analysis

585

Amino Acids

65.29

Weight (kDa)

9.03

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSPc PF00782 294 - 416 1.1e-10 Dual specificity phosphatase, catalytic domain
AMPK1_CBM PF16561 452 - 533 2.4e-19 Glycogen recognition site of AMP-activated protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1348
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 2 cut(s) 264, 895
AccII CGCG 2 cut(s) 49, 254
AclWI GGATC 7 cut(s) 105, 164, 439, 816, 1308, 1421, 1462
AcoI YGGCCR 1 cut(s) 50
AcsI RAATTY 5 cut(s) 568, 649, 775, 955, 1393
AcuI CTGAAG 3 cut(s) 387, 437, 759
AfaI GTAC 2 cut(s) 215, 1156
AfeI AGCGCT 1 cut(s) 1688
AfiI CCNNNNNNNGG 3 cut(s) 59, 78, 755
AjnI CCWGG 2 cut(s) 317, 748
AleI CACNNNNGTG 1 cut(s) 1449
AluBI AGCT 5 cut(s) 32, 130, 484, 1550, 1709
AluI AGCT 5 cut(s) 32, 130, 484, 1550, 1709
Alw21I GWGCWC 1 cut(s) 34
Alw26I GTCTC 4 cut(s) 377, 968, 1606, 1660
AlwI GGATC 7 cut(s) 105, 164, 439, 816, 1308, 1421, 1462
Ama87I CYCGRG 1 cut(s) 227
Aor51HI AGCGCT 1 cut(s) 1688
AoxI GGCC 3 cut(s) 50, 455, 1265
ApeKI GCWGC 5 cut(s) 180, 484, 932, 1229, 1706
ApoI RAATTY 5 cut(s) 568, 649, 775, 955, 1393
Asp700I GAANNNNTTC 1 cut(s) 994
AspLEI GCGC 3 cut(s) 256, 855, 1689
AspS9I GGNCC 1 cut(s) 1337
AsuHPI GGTGA 3 cut(s) 410, 1607, 1669
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 1 cut(s) 1337
BanII GRGCYC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 5 cut(s) 192, 471, 919, 1241, 1718
BccI CCATC 4 cut(s) 639, 749, 1055, 1328
BceAI ACGGC 3 cut(s) 102, 132, 283
BcgI CGANNNNNNTGC 4 cut(s) 16, 50, 259, 293
BciT130I CCWGG 2 cut(s) 319, 750
BclI TGATCA 2 cut(s) 835, 1041
BcoDI GTCTC 4 cut(s) 377, 968, 1606, 1660
BfaI CTAG 1 cut(s) 785
BfmI CTRYAG 2 cut(s) 856, 933
BfoI RGCGCY 1 cut(s) 1690
BfuAI ACCTGC 1 cut(s) 1348
Bme1390I CCNGG 2 cut(s) 319, 750
Bme18I GGWCC 1 cut(s) 1337
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 1337
BmiI GGNNCC 4 cut(s) 70, 747, 970, 1749
BmrFI CCNGG 2 cut(s) 319, 750
BmrI ACTGGG 2 cut(s) 994, 1257
BmsI GCATC 2 cut(s) 402, 1630
BmuI ACTGGG 2 cut(s) 994, 1257
BoxI GACNNNNGTC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 431
BpmI CTGGAG 1 cut(s) 771
BpuEI CTTGAG 2 cut(s) 275, 470
Bsa29I ATCGAT 1 cut(s) 1171
BsaBI GATNNNNATC 1 cut(s) 1459
BsaI GGTCTC 3 cut(s) 377, 1606, 1660
BsaJI CCNNGG 4 cut(s) 47, 114, 387, 1311
BsaWI WCCGGW 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 908, 938
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 78, 755
Bse118I RCCGGY 1 cut(s) 1276
Bse1I ACTGG 7 cut(s) 726, 810, 970, 989, 1158, 1252, 1605
Bse3DI GCAATG 1 cut(s) 1529
Bse8I GATNNNNATC 1 cut(s) 1459
BseBI CCWGG 2 cut(s) 319, 750
BseCI ATCGAT 1 cut(s) 1171
BseDI CCNNGG 4 cut(s) 47, 114, 387, 1311
BseGI GGATG 5 cut(s) 650, 1066, 1212, 1393, 1538
BseJI GATNNNNATC 1 cut(s) 1459
BseLI CCNNNNNNNGG 3 cut(s) 59, 78, 755
BseMI GCAATG 1 cut(s) 1529
BseNI ACTGG 7 cut(s) 726, 810, 970, 989, 1158, 1252, 1605
BseRI GAGGAG 3 cut(s) 61, 610, 758
BseXI GCAGC 5 cut(s) 192, 471, 919, 1241, 1718
BseYI CCCAGC 1 cut(s) 1546
BsgI GTGCAG 1 cut(s) 707
Bsh1236I CGCG 2 cut(s) 49, 254
Bsh1285I CGRYCG 2 cut(s) 40, 1463
BshFI GGCC 3 cut(s) 52, 457, 1267
BshVI ATCGAT 1 cut(s) 1171
BsiEI CGRYCG 2 cut(s) 40, 1463
BsiHKAI GWGCWC 1 cut(s) 34
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 2 cut(s) 133, 1277
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 3 cut(s) 59, 78, 755
BsmAI GTCTC 4 cut(s) 377, 968, 1606, 1660
BsmFI GGGAC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 3 cut(s) 52, 457, 1267
Bso31I GGTCTC 3 cut(s) 377, 1606, 1660
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 34
Bsp19I CCATGG 1 cut(s) 1311
BspANI GGCC 3 cut(s) 52, 457, 1267
BspDI ATCGAT 1 cut(s) 1171
BspFNI CGCG 2 cut(s) 49, 254
BspLI GGNNCC 4 cut(s) 70, 747, 970, 1749
BspMAI CTGCAG 1 cut(s) 937
BspMI ACCTGC 1 cut(s) 1348
BspPI GGATC 7 cut(s) 105, 164, 439, 816, 1308, 1421, 1462
BspTNI GGTCTC 3 cut(s) 377, 1606, 1660
BsrBI CCGCTC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 1529
BsrFI RCCGGY 1 cut(s) 1276
BsrI ACTGG 7 cut(s) 726, 810, 970, 989, 1158, 1252, 1605
BssAI RCCGGY 1 cut(s) 1276
BssECI CCNNGG 4 cut(s) 47, 114, 387, 1311
BssNAI GTATAC 1 cut(s) 896
BssT1I CCWWGG 2 cut(s) 387, 1311
Bst1107I GTATAC 1 cut(s) 896
Bst2UI CCWGG 2 cut(s) 319, 750
Bst4CI ACNGT 4 cut(s) 151, 554, 685, 1671
Bst6I CTCTTC 1 cut(s) 735
BstAPI GCANNNNNTGC 1 cut(s) 1349
BstC8I GCNNGC 2 cut(s) 44, 1698
BstDSI CCRYGG 3 cut(s) 47, 114, 1311
BstF5I GGATG 5 cut(s) 650, 1066, 1212, 1393, 1538
BstFNI CGCG 2 cut(s) 49, 254
BstH2I RGCGCY 1 cut(s) 1690
BstHHI GCGC 3 cut(s) 256, 855, 1689
BstMAI GTCTC 4 cut(s) 377, 968, 1606, 1660
BstMCI CGRYCG 2 cut(s) 40, 1463
BstMWI GCNNNNNNNGC 4 cut(s) 819, 1349, 1693, 1706
BstNI CCWGG 2 cut(s) 319, 750
BstNSI RCATGY 1 cut(s) 1352
BstPAI GACNNNNGTC 1 cut(s) 89
BstSCI CCNGG 2 cut(s) 317, 748
BstSFI CTRYAG 2 cut(s) 856, 933
BstUI CGCG 2 cut(s) 49, 254
BstV1I GCAGC 5 cut(s) 192, 471, 919, 1241, 1718
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 4 cut(s) 110, 431, 1300, 1426
BstXI CCANNNNNNTGG 2 cut(s) 645, 1744
BstYI RGATCY 4 cut(s) 110, 431, 1300, 1426
BstZ17I GTATAC 1 cut(s) 896
Bsu15I ATCGAT 1 cut(s) 1171
BsuRI GGCC 3 cut(s) 52, 457, 1267
BsuTUI ATCGAT 1 cut(s) 1171
BtgI CCRYGG 3 cut(s) 47, 114, 1311
BtgZI GCGATG 1 cut(s) 179
BtsCI GGATG 5 cut(s) 650, 1066, 1212, 1393, 1538
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 6 cut(s) 559, 598, 690, 803, 1165, 1612
BveI ACCTGC 1 cut(s) 1348
Cac8I GCNNGC 2 cut(s) 44, 1698
CfoI GCGC 3 cut(s) 256, 855, 1689
Cfr10I RCCGGY 1 cut(s) 1276
Cfr13I GGNCC 1 cut(s) 1337
Cfr42I CCGCGG 1 cut(s) 50
ClaI ATCGAT 1 cut(s) 1171
Csp6I GTAC 2 cut(s) 214, 1155
CviQI GTAC 2 cut(s) 214, 1155
EaeI YGGCCR 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 735
EarI CTCTTC 1 cut(s) 735
EciI GGCGGA 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 387, 1311
Eco147I AGGCCT 1 cut(s) 1267
Eco24I GRGCYC 1 cut(s) 34
Eco31I GGTCTC 3 cut(s) 377, 1606, 1660
Eco47I GGWCC 1 cut(s) 1337
Eco47III AGCGCT 1 cut(s) 1688
Eco53kI GAGCTC 1 cut(s) 32
Eco57I CTGAAG 3 cut(s) 387, 437, 759
Eco88I CYCGRG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 32
EcoRI GAATTC 1 cut(s) 649
EcoRII CCWGG 2 cut(s) 317, 748
EcoT14I CCWWGG 2 cut(s) 387, 1311
EcoT38I GRGCYC 1 cut(s) 34
ErhI CCWWGG 2 cut(s) 387, 1311
FalI AAGNNNNNCTT 6 cut(s) 188, 220, 360, 392, 1464, 1496
FaqI GGGAC 1 cut(s) 97
FauI CCCGC 2 cut(s) 346, 1559
FbaI TGATCA 2 cut(s) 835, 1041
FblI GTMKAC 2 cut(s) 264, 895
FokI GGATG 5 cut(s) 657, 1073, 1219, 1400, 1525
FriOI GRGCYC 1 cut(s) 34
FspBI CTAG 1 cut(s) 785
GlaI GCGC 3 cut(s) 255, 854, 1688
GsaI CCCAGC 1 cut(s) 1550
GsuI CTGGAG 1 cut(s) 771
HaeII RGCGCY 1 cut(s) 1690
HaeIII GGCC 3 cut(s) 52, 457, 1267
HapII CCGG 2 cut(s) 133, 1277
HhaI GCGC 3 cut(s) 256, 855, 1689
Hin6I GCGC 3 cut(s) 254, 853, 1687
HinP1I GCGC 3 cut(s) 254, 853, 1687
HincII GTYRAC 3 cut(s) 265, 1576, 1674
HindII GTYRAC 3 cut(s) 265, 1576, 1674
HinfI GANTC 6 cut(s) 243, 273, 990, 1013, 1067, 1132
HpaII CCGG 2 cut(s) 133, 1277
HphI GGTGA 3 cut(s) 410, 1607, 1669
Hpy166II GTNNAC 6 cut(s) 6, 265, 896, 1328, 1576, 1674
Hpy188I TCNGA 7 cut(s) 21, 242, 367, 739, 1023, 1038, 1465
Hpy188III TCNNGA 9 cut(s) 35, 154, 196, 227, 229, 292, 449, 503, 1458
Hpy8I GTNNAC 6 cut(s) 6, 265, 896, 1328, 1576, 1674
Hpy99I CGWCG 4 cut(s) 143, 175, 266, 269
HpyAV CCTTC 5 cut(s) 138, 362, 412, 1232, 1626
HpyCH4III ACNGT 4 cut(s) 151, 554, 685, 1671
HpyCH4IV ACGT 2 cut(s) 614, 1117
HpyF10VI GCNNNNNNNGC 4 cut(s) 819, 1349, 1693, 1706
HpySE526I ACGT 2 cut(s) 614, 1117
HspAI GCGC 3 cut(s) 254, 853, 1687
Ksp22I TGATCA 2 cut(s) 835, 1041
KspI CCGCGG 1 cut(s) 50
LmnI GCTCC 6 cut(s) 74, 135, 177, 745, 871, 1753
Lsp1109I GCAGC 5 cut(s) 192, 471, 919, 1241, 1718
LweI GCATC 2 cut(s) 402, 1630
MaeI CTAG 1 cut(s) 785
MaeII ACGT 2 cut(s) 614, 1117
MaeIII GTNAC 5 cut(s) 220, 610, 1147, 1243, 1354
MbiI CCGCTC 1 cut(s) 238
MboII GAAGA 8 cut(s) 136, 268, 421, 436, 752, 800, 917, 1096
MfeI CAATTG 1 cut(s) 1281
MflI RGATCY 4 cut(s) 110, 431, 1300, 1426
MhlI GDGCHC 1 cut(s) 34
MlyI GAGTC 1 cut(s) 1022
MmeI TCCRAC 1 cut(s) 1381
MroXI GAANNNNTTC 1 cut(s) 994
MseI TTAA 1 cut(s) 798
MslI CAYNNNNRTG 3 cut(s) 643, 1363, 1449
MspA1I CMGCKG 4 cut(s) 49, 484, 1550, 1566
MspI CCGG 2 cut(s) 133, 1277
MspR9I CCNGG 2 cut(s) 319, 750
MunI CAATTG 1 cut(s) 1281
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 2 cut(s) 319, 750
MvnI CGCG 2 cut(s) 49, 254
MwoI GCNNNNNNNGC 4 cut(s) 819, 1349, 1693, 1706
NcoI CCATGG 1 cut(s) 1311
NlaIV GGNNCC 4 cut(s) 70, 747, 970, 1749
NmeAIII GCCGAG 1 cut(s) 39
NmuCI GTSAC 4 cut(s) 220, 610, 1147, 1354
NspI RCATGY 1 cut(s) 1352
OliI CACNNNNGTG 1 cut(s) 1449
PaeR7I CTCGAG 1 cut(s) 227
PceI AGGCCT 1 cut(s) 1267
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PctI GAATGC 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 994
PfeI GAWTC 5 cut(s) 243, 273, 990, 1067, 1132
PfoI TCCNGGA 1 cut(s) 317
Ple19I CGATCG 2 cut(s) 40, 1463
PleI GAGTC 1 cut(s) 1021
PpsI GAGTC 1 cut(s) 1021
PshAI GACNNNNGTC 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 34
Psp6I CCWGG 2 cut(s) 317, 748
PspFI CCCAGC 1 cut(s) 1546
PspGI CCWGG 2 cut(s) 317, 748
PspN4I GGNNCC 4 cut(s) 70, 747, 970, 1749
PspPI GGNCC 1 cut(s) 1337
PstI CTGCAG 1 cut(s) 937
PsuI RGATCY 4 cut(s) 110, 431, 1300, 1426
PvuI CGATCG 2 cut(s) 40, 1463
PvuII CAGCTG 2 cut(s) 484, 1550
RsaI GTAC 2 cut(s) 215, 1156
RsaNI GTAC 2 cut(s) 214, 1155
RseI CAYNNNNRTG 3 cut(s) 643, 1363, 1449
SacI GAGCTC 1 cut(s) 34
SacII CCGCGG 1 cut(s) 50
SalI GTCGAC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 798
Sau96I GGNCC 1 cut(s) 1337
SchI GAGTC 1 cut(s) 1022
ScrFI CCNGG 2 cut(s) 319, 750
SduI GDGCHC 1 cut(s) 34
SfaNI GCATC 2 cut(s) 402, 1630
SfcI CTRYAG 2 cut(s) 856, 933
Sfr274I CTCGAG 1 cut(s) 227
Sfr303I CCGCGG 1 cut(s) 50
SgrBI CCGCGG 1 cut(s) 50
SgrDI CGTCGACG 1 cut(s) 263
SinI GGWCC 1 cut(s) 1337
SlaI CTCGAG 1 cut(s) 227
SmiMI CAYNNNNRTG 3 cut(s) 643, 1363, 1449
SmlI CTYRAG 3 cut(s) 227, 290, 449
SmoI CTYRAG 3 cut(s) 227, 290, 449
SseBI AGGCCT 1 cut(s) 1267
SspI AATATT 1 cut(s) 1648
SspMI CTAG 1 cut(s) 785
SstI GAGCTC 1 cut(s) 34
StuI AGGCCT 1 cut(s) 1267
StyD4I CCNGG 2 cut(s) 317, 748
StyI CCWWGG 2 cut(s) 387, 1311
TaaI ACNGT 4 cut(s) 151, 554, 685, 1671
TaiI ACGT 2 cut(s) 617, 1120
TaqI TCGA 7 cut(s) 36, 138, 228, 264, 526, 1029, 1171
TatI WGTACW 1 cut(s) 213
TauI GCSGC 5 cut(s) 49, 52, 66, 69, 238
TfiI GAWTC 5 cut(s) 243, 273, 990, 1067, 1132
Tru1I TTAA 1 cut(s) 798
Tru9I TTAA 1 cut(s) 798
TscAI CASTG 6 cut(s) 559, 598, 690, 810, 1165, 1612
TseFI GTSAC 4 cut(s) 220, 610, 1147, 1354
TseI GCWGC 5 cut(s) 180, 484, 932, 1229, 1706
Tsp45I GTSAC 4 cut(s) 220, 610, 1147, 1354
TspDTI ATGAA 5 cut(s) 215, 509, 1214, 1498, 1681
TspGWI ACGGA 4 cut(s) 156, 250, 786, 884
TspRI CASTG 6 cut(s) 559, 598, 690, 810, 1165, 1612
VpaK11BI GGWCC 1 cut(s) 1337
XapI RAATTY 5 cut(s) 568, 649, 775, 955, 1393
XceI RCATGY 1 cut(s) 1352
XcmI CCANNNNNNNNNTGG 2 cut(s) 325, 718
XhoI CTCGAG 1 cut(s) 227
XmiI GTMKAC 2 cut(s) 264, 895
XmnI GAANNNNTTC 1 cut(s) 994
XspI CTAG 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.