Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007283

Physical Location & Seq

Genomic Coordinates Forward (+)

2052477 .. 2053600

Gene Structure 1124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCGACTCTGCAGCTGCCGAGTTGTAGATCTCACGGTCGCTCTTTTCCTCCGTCGTTGATCAGCGCCTCTACCTCTTCCTCTTCCTCCGCGTTTTGGGGCGGACAGATGGCTTTCATCAACGGCCGCCGTTCATCGGTGGAGAAGCTCCGGTACAAAGGTGGCGGAGCGGTTAGGGTTCTTGCGATGTCGGGCGGTTCGTCTTCGTCGTCGTTCAAGATGAACTTGAACGAGTACATGGTCACTCTCGACAAACCGCTCGGGATTCGGTTCGCGCTCTCCGTCGACGGCCGAATCTTCGTCCACGCCCTCAAGAAAGGGGGGAATGCGGAGAAGTCCAGGATAGTAATGGTGGGCGACACATTGAAAAAGGCCGGCGATTTGTCTGCCGGCAGGCTTGCTGAAGCAAGCGACTTTGGTGATACCCAGAAGATGCTGAAGGAGAAAACAGGATCTATTAGCCTGGTTCTTGAGAGACCCCCCTCTCCTTTTCCAATTCAGCAACTGCTTCTTATGAATCGATCTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009987 GO:0012505 GO:0015980 GO:0016020 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0030867 GO:0031090 GO:0031984 GO:0042175 GO:0042578 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046838 GO:0055114 GO:0071704 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901575 GO:2001069

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM DSPc

Protein Analysis

177

Amino Acids

18.9

Weight (kDa)

10.5

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01510 AT3G01510 AT3G01510
fragaria_vesca	FvH4_6g50790 FvH4_6g50790
malus_domestica	MD09G1032300.v1.1
prunus_persica	Prupe.3G285700_v2.0.a1 Prupe.3G285700_v2.0.a1 Prupe.3G285700_v2.0.a1 Prupe.3G285700_v2.0.a1
pyrus_communis	pycom111g02570 pycom17g03110 pycom17g03130
rosa_chinensis	RchiOBHm_Chr2g0172101 RchiOBHm_Chr2g0172181
rosa_laevigata	RLG00000022090
rosa_multiflora	Rmu_ssc0000252.1_g000048
rosa_roxburghii	Rroxscaffold_2G00080100
rosa_rugosa	Rorug02G0556900
rosa_samantha	Rh2AG632400 Rh2BG646000 Rh2CG612600 Rh2DG653400 Rh2DG660600
rosa_wichuraiana	Rw2G052350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	170, 259
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	2 cut(s)	92, 275
AciI	CCGC	8 cut(s)	90, 102, 127, 165, 170, 195, 257, 329
AclWI	GGATC	1 cut(s)	460
AcoI	YGGCCR	2 cut(s)	124, 289
AcuI	CTGAAG	2 cut(s)	423, 458
AfaI	GTAC	2 cut(s)	155, 236
AfiI	CCNNNNNNNGG	2 cut(s)	96, 136
AgsI	TTSAA	3 cut(s)	217, 229, 367
AjnI	CCWGG	2 cut(s)	338, 462
AluBI	AGCT	2 cut(s)	16, 148
AluI	AGCT	2 cut(s)	16, 148
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	460
AlwNI	CAGNNNCTG	1 cut(s)	505
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	3 cut(s)	124, 289, 372
ApeKI	GCWGC	2 cut(s)	13, 16
AspLEI	GCGC	2 cut(s)	68, 277
AsuHPI	GGTGA	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	260
BaeI	ACNNNNGTAYC	2 cut(s)	145, 178
BarI	GAAGNNNNNNTAC	2 cut(s)	137, 169
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	3, 25
BccI	CCATC	1 cut(s)	103
BceAI	ACGGC	3 cut(s)	114, 139, 304
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	2 cut(s)	340, 464
BclI	TGATCA	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	469
BfmI	CTRYAG	1 cut(s)	11
BfoI	RGCGCY	1 cut(s)	69
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	3 cut(s)	14, 17, 127
BlsI	GCNGC	3 cut(s)	15, 18, 128
Bme1390I	CCNGG	2 cut(s)	340, 464
BmeT110I	CYCGRG	1 cut(s)	260
BmrFI	CCNGG	2 cut(s)	340, 464
BmsI	GCATC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	195
BpuEI	CTTGAG	2 cut(s)	296, 491
Bsa29I	ATCGAT	1 cut(s)	520
BsaI	GGTCTC	1 cut(s)	469
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 136
Bse118I	RCCGGY	2 cut(s)	374, 389
BseBI	CCWGG	2 cut(s)	340, 464
BseCI	ATCGAT	1 cut(s)	520
BseLI	CCNNNNNNNGG	2 cut(s)	96, 136
BseX3I	CGGCCG	2 cut(s)	124, 289
BseXI	GCAGC	2 cut(s)	3, 25
Bsh1236I	CGCG	2 cut(s)	92, 275
Bsh1285I	CGRYCG	3 cut(s)	40, 127, 292
BshFI	GGCC	3 cut(s)	126, 291, 374
BshVI	ATCGAT	1 cut(s)	520
BsiEI	CGRYCG	3 cut(s)	40, 127, 292
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	3 cut(s)	151, 375, 390
BslI	CCNNNNNNNGG	2 cut(s)	96, 136
BsmAI	GTCTC	1 cut(s)	469
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	3 cut(s)	126, 291, 374
Bso31I	GGTCTC	1 cut(s)	469
BsoBI	CYCGRG	1 cut(s)	260
Bsp143I	GATC	4 cut(s)	29, 60, 452, 521
BspACI	CCGC	8 cut(s)	90, 102, 127, 165, 170, 195, 257, 329
BspANI	GGCC	3 cut(s)	126, 291, 374
BspDI	ATCGAT	1 cut(s)	520
BspFNI	CGCG	2 cut(s)	92, 275
BspMAI	CTGCAG	1 cut(s)	15
BspPI	GGATC	1 cut(s)	460
BspTNI	GGTCTC	1 cut(s)	469
BsrBI	CCGCTC	2 cut(s)	170, 259
BsrFI	RCCGGY	2 cut(s)	374, 389
BssAI	RCCGGY	2 cut(s)	374, 389
BssMI	GATC	4 cut(s)	29, 60, 452, 521
Bst2UI	CCWGG	2 cut(s)	340, 464
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	2 cut(s)	82, 88
BstC8I	GCNNGC	5 cut(s)	376, 391, 395, 399, 409
BstFNI	CGCG	2 cut(s)	92, 275
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	68, 277
BstKTI	GATC	4 cut(s)	32, 63, 455, 524
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	4 cut(s)	29, 60, 452, 521
BstMCI	CGRYCG	3 cut(s)	40, 127, 292
BstNI	CCWGG	2 cut(s)	340, 464
BstSCI	CCNGG	2 cut(s)	338, 462
BstSFI	CTRYAG	1 cut(s)	11
BstUI	CGCG	2 cut(s)	92, 275
BstV1I	GCAGC	2 cut(s)	3, 25
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	2 cut(s)	29, 452
BstYI	RGATCY	2 cut(s)	29, 452
BstZI	CGGCCG	2 cut(s)	124, 289
Bsu15I	ATCGAT	1 cut(s)	520
BsuRI	GGCC	3 cut(s)	126, 291, 374
BsuTUI	ATCGAT	1 cut(s)	520
BtgZI	GCGATG	1 cut(s)	200
Cac8I	GCNNGC	5 cut(s)	376, 391, 395, 399, 409
CaiI	CAGNNNCTG	1 cut(s)	505
CfoI	GCGC	2 cut(s)	68, 277
Cfr10I	RCCGGY	2 cut(s)	374, 389
ClaI	ATCGAT	1 cut(s)	520
Csp6I	GTAC	2 cut(s)	154, 235
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	8 cut(s)	16, 113, 126, 148, 291, 374, 397, 462
CviKI_1	RGCY	8 cut(s)	16, 113, 126, 148, 291, 374, 397, 462
CviQI	GTAC	2 cut(s)	154, 235
DpnI	GATC	4 cut(s)	31, 62, 454, 523
DpnII	GATC	4 cut(s)	29, 60, 452, 521
EaeI	YGGCCR	2 cut(s)	124, 289
EagI	CGGCCG	2 cut(s)	124, 289
Eam1104I	CTCTTC	2 cut(s)	82, 88
EarI	CTCTTC	2 cut(s)	82, 88
EciI	GGCGGA	2 cut(s)	117, 180
EclXI	CGGCCG	2 cut(s)	124, 289
Eco31I	GGTCTC	1 cut(s)	469
Eco52I	CGGCCG	2 cut(s)	124, 289
Eco57I	CTGAAG	2 cut(s)	423, 458
Eco88I	CYCGRG	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	338, 462
FaeI	CATG	1 cut(s)	241
FaiI	YATR	2 cut(s)	239, 515
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	1 cut(s)	237
FbaI	TGATCA	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	14, 17, 127
Fsp4HI	GCNGC	3 cut(s)	14, 17, 127
GlaI	GCGC	2 cut(s)	67, 276
GluI	GCNGC	3 cut(s)	14, 17, 127
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	126, 291, 374
HapII	CCGG	3 cut(s)	151, 375, 390
HhaI	GCGC	2 cut(s)	68, 277
Hin1II	CATG	1 cut(s)	241
Hin6I	GCGC	2 cut(s)	66, 275
HinP1I	GCGC	2 cut(s)	66, 275
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	4 cut(s)	7, 265, 294, 517
HpaII	CCGG	3 cut(s)	151, 375, 390
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	2 cut(s)	286, 304
Hpy188III	TCNNGA	6 cut(s)	217, 248, 262, 313, 470, 525
Hpy8I	GTNNAC	2 cut(s)	286, 304
Hpy99I	CGWCG	5 cut(s)	58, 211, 214, 287, 290
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	241
HspAI	GCGC	2 cut(s)	66, 275
KroI	GCCGGC	2 cut(s)	374, 389
KroNI	GCCGGC	2 cut(s)	376, 391
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	4 cut(s)	29, 60, 452, 521
LmnI	GCTCC	2 cut(s)	153, 167
Lsp1109I	GCAGC	2 cut(s)	3, 25
LweI	GCATC	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	4 cut(s)	31, 62, 454, 523
MbiI	CCGCTC	2 cut(s)	170, 259
MboI	GATC	4 cut(s)	29, 60, 452, 521
MboII	GAAGA	5 cut(s)	69, 75, 195, 289, 442
MflI	RGATCY	2 cut(s)	29, 452
MluCI	AATT	1 cut(s)	495
MnlI	CCTC	7 cut(s)	60, 79, 85, 91, 97, 320, 493
MroNI	GCCGGC	2 cut(s)	374, 389
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	3 cut(s)	151, 375, 390
MspR9I	CCNGG	2 cut(s)	340, 464
Mva1269I	GAATGC	1 cut(s)	331
MvaI	CCWGG	2 cut(s)	340, 464
MvnI	CGCG	2 cut(s)	92, 275
NaeI	GCCGGC	2 cut(s)	376, 391
NdeII	GATC	4 cut(s)	29, 60, 452, 521
NgoMIV	GCCGGC	2 cut(s)	374, 389
NlaIII	CATG	1 cut(s)	241
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	3 cut(s)	197, 206, 279
PctI	GAATGC	1 cut(s)	331
PdiI	GCCGGC	2 cut(s)	376, 391
PfeI	GAWTC	3 cut(s)	265, 294, 517
PfoI	TCCNGGA	1 cut(s)	338
PkrI	GCNGC	3 cut(s)	15, 18, 128
Psp6I	CCWGG	2 cut(s)	338, 462
PspGI	CCWGG	2 cut(s)	338, 462
PstI	CTGCAG	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	505
PsuI	RGATCY	2 cut(s)	29, 452
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	2 cut(s)	155, 236
RsaNI	GTAC	2 cut(s)	154, 235
SalI	GTCGAC	1 cut(s)	284
SatI	GCNGC	3 cut(s)	14, 17, 127
Sau3AI	GATC	4 cut(s)	29, 60, 452, 521
ScrFI	CCNGG	2 cut(s)	340, 464
SetI	ASST	4 cut(s)	18, 77, 150, 163
SfaNI	GCATC	1 cut(s)	423
SfcI	CTRYAG	1 cut(s)	11
SgrDI	CGTCGACG	1 cut(s)	284
SmlI	CTYRAG	2 cut(s)	311, 470
SmoI	CTYRAG	2 cut(s)	311, 470
Sse9I	AATT	1 cut(s)	495
SsiI	CCGC	8 cut(s)	90, 102, 127, 165, 170, 195, 257, 329
StyD4I	CCNGG	2 cut(s)	338, 462
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	4 cut(s)	249, 285, 520, 526
TasI	AATT	1 cut(s)	495
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	3 cut(s)	265, 294, 517
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	13, 16
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	4 cut(s)	106, 123, 236, 530
TspGWI	ACGGA	2 cut(s)	42, 271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.