pycom17g04870
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011691
Physical Location & Seq
Forward (+)
3352030 .. 3353293
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1068 bp
ATGGAAAATACTTCTGGGTTTATTATGGAAGATGAGAAGATGGAACTTCCTCCGGGGTTCCGATTTCATCCAACGGATGAAGAGCTCGTAAGTCACTACCTATCCCCCAAAGTTCTTGACAACTTCTTCTGTGCTAGAGCAATTGGCGAGGTGGATTTGAACAAGTGTGAGCCTTGGGATTTGCCTTGGAAGGCAAAAATGGGAGAAAAGGAATGGTACTTCTTCTGTGTGAAAGACAGAAAATACCCAACTGGTCTGAGAACAAACCGGGCAACGGAGGCCGGGTACTGGAAAGCCACAGGCAAAGATAAGGAGATTTACAAGGCCAAAACCCTGGTTGGAATGAAGAAAACTCTGGTTTTCTACACAGGAAGAGCCCCAAAAGGTGTGAAGACCAATTGGGTCATGCATGAATACAGATTGGAGGGCGAAAGCTCTACCCATAATCTCCCCAAAACTGCGAAGAATGAGTGGGTGATTTGCAGAATTTTCCAAAAGAGTAGCGGTGGGAAGAAGACTCATATTTCAGGGTTGCTGAGGCCGAGCCCCTTCGGGAACGAATTGCGCCCTTCTTTACTCCCGCCATTAATGGATTCCCCAGCCTACAACAGCGACGCTAGAACAACAGCCACCGCCTGCGAAACCTCGCACGTGTCCTGCTTTTCTGATCCAGCGGAGGATCAGAAGACTGAGGACGACATTATGGACAGCTTCAACAACAGCTACAACCACCAACACCACCACCACCACCACAACAACATTCATTTCGCTTCTTCATCACGTTCGAATCCCTCTGCTCATTTGAACTCTTTTTATTCCAACCAAATCCCACCAAACATTGGACTATTGCACCACCAAAACTCAGTTTTGATGCAGGACCCGTCCTTATTGACGATGTTAGTTGAAAACCATGCACCAAACTTGAGGCGTAGTGCAAAAATAGAGTTCTCACCGGACACAGGGCTGAGCATCGATGCTTCCTCAGTGGTTTCAAACAGAGAAATGGTACAGGACGATCCATCGTACTCGTCCGCTCCGATAGAACTCGATGGCCTCTGGAATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0007568 GO:0007569 GO:0008150 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044093 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0046677 GO:0046983 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:0090398 GO:0090400 GO:0090693 GO:0090696 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900140 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:1904248 GO:1904250 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

356

Amino Acids

40.33

Weight (kDa)

6.41

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 17 - 141 1.3e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011691)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39610
fragaria_vesca FvH4_6g48120
malus_domestica MD09G1053700.v1.1 MD17G1051600.v1.1
prunus_persica Prupe.3G264600_v2.0.a1
pyrus_communis pycom111g04470 pycom17g04870
rosa_chinensis RchiOBHm_Chr2g0167461
rosa_laevigata RLG00000021720
rosa_multiflora Rmu_sc0001206.1_g000039 Rmu_sc0019611.1_g000001
rosa_roxburghii Rroxscaffold_2G00083490
rosa_rugosa Rorug02G0530400
rosa_samantha Rh2AG597500 Rh2BG608900 Rh2CG579800 Rh2DG620100 Rh7BG045200
rosa_wichuraiana Rw2G049720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 839
AccBSI CCGCTC 1 cut(s) 1034
AciI CCGC 5 cut(s) 504, 581, 633, 674, 1032
AclWI GGATC 3 cut(s) 662, 687, 1010
AcsI RAATTY 1 cut(s) 486
AcvI CACGTG 1 cut(s) 652
AfaI GTAC 4 cut(s) 218, 287, 1008, 1025
AfiI CCNNNNNNNGG 4 cut(s) 274, 288, 839, 959
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 5 cut(s) 160, 715, 805, 905, 993
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 4 cut(s) 85, 435, 711, 723
AluI AGCT 4 cut(s) 85, 435, 711, 723
Alw21I GWGCWC 1 cut(s) 87
AlwI GGATC 3 cut(s) 662, 687, 1010
AoxI GGCC 4 cut(s) 279, 324, 539, 1051
ApoI RAATTY 1 cut(s) 486
AseI ATTAAT 1 cut(s) 587
AspLEI GCGC 1 cut(s) 567
AspS9I GGNCC 1 cut(s) 877
AsuC2I CCSGG 3 cut(s) 54, 269, 283
AsuHPI GGTGA 2 cut(s) 487, 942
AsuII TTCGAA 1 cut(s) 785
AvaII GGWCC 1 cut(s) 877
BanII GRGCYC 3 cut(s) 87, 379, 548
BbrPI CACGTG 1 cut(s) 652
BbsI GAAGAC 3 cut(s) 398, 521, 692
Bbv12I GWGCWC 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 536
BccI CCATC 3 cut(s) 34, 1027, 1043
BciT130I CCWGG 1 cut(s) 335
BcnI CCSGG 3 cut(s) 54, 269, 283
BfaI CTAG 2 cut(s) 135, 618
BlpI GCTNAGC 1 cut(s) 965
Bme1390I CCNGG 4 cut(s) 54, 269, 283, 335
Bme18I GGWCC 1 cut(s) 877
BmgT120I GGNCC 1 cut(s) 877
BmiI GGNNCC 2 cut(s) 59, 879
BmrFI CCNGG 4 cut(s) 54, 269, 283, 335
BmsI GCATC 3 cut(s) 861, 964, 978
BpiI GAAGAC 3 cut(s) 398, 521, 692
Bpu10I CCTNAGC 1 cut(s) 536
Bpu1102I GCTNAGC 1 cut(s) 965
Bpu14I TTCGAA 1 cut(s) 785
BpuEI CTTGAG 1 cut(s) 943
BpuMI CCSGG 3 cut(s) 54, 269, 283
Bsa29I ATCGAT 1 cut(s) 972
BsaAI YACGTR 1 cut(s) 652
BsaJI CCNNGG 4 cut(s) 53, 173, 185, 333
BsaWI WCCGGW 1 cut(s) 952
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 4 cut(s) 274, 288, 839, 959
Bse1I ACTGG 2 cut(s) 256, 293
BseBI CCWGG 1 cut(s) 335
BseCI ATCGAT 1 cut(s) 972
BseDI CCNNGG 4 cut(s) 53, 173, 185, 333
BseGI GGATG 2 cut(s) 67, 82
BseLI CCNNNNNNNGG 4 cut(s) 274, 288, 839, 959
BseMII CTCAG 6 cut(s) 248, 527, 681, 876, 956, 996
BseNI ACTGG 2 cut(s) 256, 293
BseYI CCCAGC 1 cut(s) 598
BshFI GGCC 4 cut(s) 281, 326, 541, 1053
BshVI ATCGAT 1 cut(s) 972
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 4 cut(s) 53, 268, 282, 953
BslI CCNNNNNNNGG 4 cut(s) 274, 288, 839, 959
BsnI GGCC 4 cut(s) 281, 326, 541, 1053
Bsp119I TTCGAA 1 cut(s) 785
Bsp1286I GDGCHC 3 cut(s) 87, 379, 548
Bsp143I GATC 3 cut(s) 667, 679, 1015
Bsp1720I GCTNAGC 1 cut(s) 965
BspACI CCGC 5 cut(s) 504, 581, 633, 674, 1032
BspANI GGCC 4 cut(s) 281, 326, 541, 1053
BspCNI CTCAG 6 cut(s) 249, 528, 682, 875, 957, 995
BspDI ATCGAT 1 cut(s) 972
BspLI GGNNCC 2 cut(s) 59, 879
BspPI GGATC 3 cut(s) 662, 687, 1010
BspQI GCTCTTC 2 cut(s) 75, 367
BspT104I TTCGAA 1 cut(s) 785
BsrBI CCGCTC 1 cut(s) 1034
BsrI ACTGG 2 cut(s) 256, 293
BssECI CCNNGG 4 cut(s) 53, 173, 185, 333
BssMI GATC 3 cut(s) 667, 679, 1015
BssT1I CCWWGG 2 cut(s) 173, 185
Bst2UI CCWGG 1 cut(s) 335
Bst6I CTCTTC 2 cut(s) 75, 367
BstBAI YACGTR 1 cut(s) 652
BstBI TTCGAA 1 cut(s) 785
BstC8I GCNNGC 1 cut(s) 637
BstDEI CTNAG 6 cut(s) 257, 536, 690, 862, 965, 982
BstF5I GGATG 2 cut(s) 67, 82
BstHHI GCGC 1 cut(s) 567
BstKTI GATC 3 cut(s) 670, 682, 1018
BstMBI GATC 3 cut(s) 667, 679, 1015
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 1 cut(s) 335
BstSCI CCNGG 4 cut(s) 52, 267, 281, 333
BstV2I GAAGAC 3 cut(s) 398, 521, 692
BstXI CCANNNNNNTGG 1 cut(s) 334
Bsu15I ATCGAT 1 cut(s) 972
BsuRI GGCC 4 cut(s) 281, 326, 541, 1053
BsuTUI ATCGAT 1 cut(s) 972
BtsCI GGATG 2 cut(s) 67, 82
BtsIMutI CAGTG 1 cut(s) 990
Cac8I GCNNGC 1 cut(s) 637
CfoI GCGC 1 cut(s) 567
Cfr13I GGNCC 1 cut(s) 877
ClaI ATCGAT 1 cut(s) 972
CseI GACGC 1 cut(s) 623
Csp6I GTAC 4 cut(s) 217, 286, 1007, 1024
CviAII CATG 3 cut(s) 406, 410, 911
CviQI GTAC 4 cut(s) 217, 286, 1007, 1024
DdeI CTNAG 6 cut(s) 257, 536, 690, 862, 965, 982
DpnI GATC 3 cut(s) 669, 681, 1017
DpnII GATC 3 cut(s) 667, 679, 1015
Eam1104I CTCTTC 2 cut(s) 75, 367
EarI CTCTTC 2 cut(s) 75, 367
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 2 cut(s) 173, 185
Eco24I GRGCYC 3 cut(s) 87, 379, 548
Eco47I GGWCC 1 cut(s) 877
Eco53kI GAGCTC 1 cut(s) 85
Eco72I CACGTG 1 cut(s) 652
EcoICRI GAGCTC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 877
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 2 cut(s) 173, 185
EcoT22I ATGCAT 1 cut(s) 411
EcoT38I GRGCYC 3 cut(s) 87, 379, 548
ErhI CCWWGG 2 cut(s) 173, 185
FaeI CATG 3 cut(s) 409, 413, 914
FaiI YATR 7 cut(s) 26, 407, 411, 444, 522, 704, 912
FatI CATG 3 cut(s) 405, 409, 910
FauI CCCGC 1 cut(s) 588
FokI GGATG 2 cut(s) 54, 89
FriOI GRGCYC 3 cut(s) 87, 379, 548
FspBI CTAG 2 cut(s) 135, 618
GlaI GCGC 1 cut(s) 566
GsaI CCCAGC 1 cut(s) 602
HaeIII GGCC 4 cut(s) 281, 326, 541, 1053
HapII CCGG 4 cut(s) 53, 268, 282, 953
HgaI GACGC 1 cut(s) 623
HhaI GCGC 1 cut(s) 567
Hin1II CATG 3 cut(s) 409, 413, 914
Hin6I GCGC 1 cut(s) 565
HinP1I GCGC 1 cut(s) 565
HinfI GANTC 3 cut(s) 517, 593, 787
HpaII CCGG 4 cut(s) 53, 268, 282, 953
HphI GGTGA 2 cut(s) 487, 942
Hpy188I TCNGA 5 cut(s) 62, 258, 667, 684, 1038
Hpy188III TCNNGA 3 cut(s) 116, 553, 1057
Hpy99I CGWCG 1 cut(s) 617
HpyAV CCTTC 3 cut(s) 184, 559, 579
HpyCH4IV ACGT 2 cut(s) 651, 781
HpyCH4V TGCA 6 cut(s) 409, 483, 850, 874, 914, 935
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 6 cut(s) 257, 536, 690, 862, 965, 982
HpySE526I ACGT 2 cut(s) 651, 781
Hsp92II CATG 3 cut(s) 409, 413, 914
HspAI GCGC 1 cut(s) 565
Kzo9I GATC 3 cut(s) 667, 679, 1015
LguI GCTCTTC 2 cut(s) 75, 367
LmnI GCTCC 1 cut(s) 1039
LweI GCATC 3 cut(s) 861, 964, 978
MaeI CTAG 2 cut(s) 135, 618
MaeII ACGT 2 cut(s) 651, 781
MaeIII GTNAC 1 cut(s) 92
MalI GATC 3 cut(s) 669, 681, 1017
MbiI CCGCTC 1 cut(s) 1034
MboI GATC 3 cut(s) 667, 679, 1015
MfeI CAATTG 2 cut(s) 141, 397
MhlI GDGCHC 3 cut(s) 87, 379, 548
MluCI AATT 5 cut(s) 141, 397, 486, 560, 1060
MlyI GAGTC 1 cut(s) 511
MmeI TCCRAC 3 cut(s) 95, 319, 843
Mph1103I ATGCAT 1 cut(s) 411
MseI TTAA 1 cut(s) 587
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 4 cut(s) 53, 268, 282, 953
MspR9I CCNGG 4 cut(s) 54, 269, 283, 335
MunI CAATTG 2 cut(s) 141, 397
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 278
NciI CCSGG 3 cut(s) 54, 269, 283
NdeII GATC 3 cut(s) 667, 679, 1015
NlaIII CATG 3 cut(s) 409, 413, 914
NlaIV GGNNCC 2 cut(s) 59, 879
NmeAIII GCCGAG 1 cut(s) 567
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 411
NspV TTCGAA 1 cut(s) 785
PciSI GCTCTTC 2 cut(s) 75, 367
PcsI WCGNNNNNNNCGW 1 cut(s) 1034
PfeI GAWTC 2 cut(s) 593, 787
PflMI CCANNNNNTGG 1 cut(s) 839
PleI GAGTC 1 cut(s) 511
PmaCI CACGTG 1 cut(s) 652
PmlI CACGTG 1 cut(s) 652
PpsI GAGTC 1 cut(s) 511
Ppu21I YACGTR 1 cut(s) 652
PpuMI RGGWCCY 1 cut(s) 877
PshBI ATTAAT 1 cut(s) 587
Psp124BI GAGCTC 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 877
Psp6I CCWGG 1 cut(s) 333
PspCI CACGTG 1 cut(s) 652
PspFI CCCAGC 1 cut(s) 598
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 2 cut(s) 59, 879
PspPI GGNCC 1 cut(s) 877
PspPPI RGGWCCY 1 cut(s) 877
RsaI GTAC 4 cut(s) 218, 287, 1008, 1025
RsaNI GTAC 4 cut(s) 217, 286, 1007, 1024
SacI GAGCTC 1 cut(s) 87
SapI GCTCTTC 2 cut(s) 75, 367
SaqAI TTAA 1 cut(s) 587
Sau3AI GATC 3 cut(s) 667, 679, 1015
Sau96I GGNCC 1 cut(s) 877
SchI GAGTC 1 cut(s) 511
ScrFI CCNGG 4 cut(s) 54, 269, 283, 335
SduI GDGCHC 3 cut(s) 87, 379, 548
SfaNI GCATC 3 cut(s) 861, 964, 978
SfuI TTCGAA 1 cut(s) 785
SinI GGWCC 1 cut(s) 877
SmlI CTYRAG 1 cut(s) 922
SmoI CTYRAG 1 cut(s) 922
Sse9I AATT 5 cut(s) 141, 397, 486, 560, 1060
SsiI CCGC 5 cut(s) 504, 581, 633, 674, 1032
SspMI CTAG 2 cut(s) 135, 618
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 52, 267, 281, 333
StyI CCWWGG 2 cut(s) 173, 185
TaiI ACGT 2 cut(s) 654, 784
TaqI TCGA 3 cut(s) 785, 972, 1047
TasI AATT 5 cut(s) 141, 397, 486, 560, 1060
TfiI GAWTC 2 cut(s) 593, 787
Tru1I TTAA 1 cut(s) 587
Tru9I TTAA 1 cut(s) 587
TscAI CASTG 1 cut(s) 990
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 6 cut(s) 56, 93, 359, 426, 752, 765
TspGWI ACGGA 2 cut(s) 89, 290
TspRI CASTG 1 cut(s) 990
Van91I CCANNNNNTGG 1 cut(s) 839
VpaK11BI GGWCC 1 cut(s) 877
VspI ATTAAT 1 cut(s) 587
XapI RAATTY 1 cut(s) 486
XspI CTAG 2 cut(s) 135, 618
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.