Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010469

Physical Location & Seq

Genomic Coordinates Forward (+)

3402578 .. 3404673

Gene Structure 2096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAAATTCGGGAAGGAGTTCAGGACCCACCTGGAAGAGACACTCCCGGAGTGGAGGGACAAGTTCCTTTGCTACAAGCTCTTGAAGAAGCTCCTCAAGGGCTTCCTCACCAGCGCGGCCGTTATTGCCGCGGTGGATTCCCTCCATCGCCACCTCGAGTTTCAGCCGGCATATGCGCATCCGGCCGCTGCTGATGAAGGTGGCGGGTTCCATCCTTTAGCGGGACTCCAATATTGGTTCGTTGCGATTTTGAATAAGGAGCTGTATAAGTTAAACGATTTCTATATGGATAAGGAGGAGGATTTCGTTATACGATTCCAGGAGCTGAAAGGAAGAATCGAGATCGTCAGGGAAAGGAGCAGCAGGGGTGGAGTTTTTACATCAGAGACCGAGTTCAGCAAAGAAGTGATGGACATCCGTAAGGACTTTGTCACCATTCACGGGGAGATGGTGCTTCTCAAAAATTATAGCTCGTTGAATTTTGCGGGGGTTGTCAAAATTCTAAAGAAGTACGATAAACGAACTGGAGGAGTATTGCGTTTACGTTTCACGCAAACGCAACTAGCTCACCAGCCTTTCTTTACAACAGAACTTCTGACGGGGCTAGTCCGTGAATGCGAGGCAAATCTCGAGCTTCTCTTCCCACTGGAAGCAGAAGTCATTCAAGGTACACCAACCACACAAGATGAAACCACCCCAGACACAAGTCATTCAAACCCACAATCGAATCATTCGGCAAATATTGCATGTGAGACACCTTCAAACATGGAGGCAAACATGGATATATATCGTGGAACCGTTGCTGCAATGAAGGCCATTCAAGGCCTTCAAAAACCAAGCTCCACTTCCGGTCCATGCTTGCTTTCAAATCACTTTAGAAGCCAGGATGAGGAGAGCACTGGTGCTGTCACTGAAAACTCTACTTCAAACTCTGTAGCGAGCTGGCAAAGCGAAGAGGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

322

Amino Acids

36.17

Weight (kDa)

5.64

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 35	1e-08	SPX domain
SPX	PF03105	138 - 176	1.1e-08	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15330 AT5G15330
fragaria_vesca	FvH4_6g48080
malus_domestica	MD09G1054300.v1.1 MD17G1052000.v1.1 MD17G1052100.v1.1
prunus_persica	Prupe.3G264200_v2.0.a1 Prupe.3G264200_v2.0.a1
pyrus_communis	pycom111g04560 pycom17g04910 pycom17g04920
rosa_chinensis	RchiOBHm_Chr2g0167401
rosa_laevigata	RLG00000021714
rosa_multiflora	Rmu_sc0001840.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083540
rosa_rugosa	Rorug02G0530200
rosa_samantha	Rh2AG597100 Rh2BG608500 Rh2CG579300 Rh2DG619700
rosa_wichuraiana	Rw2G049690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	177
AccII	CGCG	2 cut(s)	116, 131
AciI	CCGC	7 cut(s)	116, 129, 131, 186, 204, 221, 485
AcoI	YGGCCR	2 cut(s)	117, 183
AcsI	RAATTY	3 cut(s)	5, 478, 498
AfaI	GTAC	2 cut(s)	512, 670
AfiI	CCNNNNNNNGG	3 cut(s)	221, 441, 889
AjnI	CCWGG	3 cut(s)	30, 318, 882
AjuI	GAANNNNNNNTTGG	2 cut(s)	829, 861
AluBI	AGCT	9 cut(s)	79, 91, 262, 325, 471, 566, 634, 840, 942
AluI	AGCT	9 cut(s)	79, 91, 262, 325, 471, 566, 634, 840, 942
Alw21I	GWGCWC	1 cut(s)	899
Alw26I	GTCTC	3 cut(s)	32, 380, 746
AlwNI	CAGNNNCTG	1 cut(s)	325
Ama87I	CYCGRG	2 cut(s)	155, 629
AoxI	GGCC	4 cut(s)	117, 183, 813, 823
ApeKI	GCWGC	3 cut(s)	188, 360, 803
ApoI	RAATTY	3 cut(s)	5, 478, 498
Asp700I	GAANNNNTTC	2 cut(s)	17, 660
AspLEI	GCGC	2 cut(s)	116, 178
AspS9I	GGNCC	2 cut(s)	24, 851
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	3 cut(s)	100, 424, 560
AvaI	CYCGRG	2 cut(s)	155, 629
AvaII	GGWCC	2 cut(s)	24, 851
Bbv12I	GWGCWC	1 cut(s)	899
BbvI	GCAGC	3 cut(s)	175, 372, 790
BccI	CCATC	4 cut(s)	153, 219, 403, 442
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	3 cut(s)	32, 320, 884
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	3 cut(s)	32, 380, 746
BfaI	CTAG	2 cut(s)	563, 605
BfmI	CTRYAG	1 cut(s)	933
BisI	GCNGC	6 cut(s)	117, 129, 186, 189, 361, 804
BlsI	GCNGC	6 cut(s)	118, 130, 187, 190, 362, 805
Bme1390I	CCNGG	4 cut(s)	32, 47, 320, 884
Bme18I	GGWCC	2 cut(s)	24, 851
BmeT110I	CYCGRG	2 cut(s)	155, 629
BmgT120I	GGNCC	2 cut(s)	24, 851
BmiI	GGNNCC	3 cut(s)	26, 209, 796
BmrFI	CCNGG	4 cut(s)	32, 47, 320, 884
BmsI	GCATC	1 cut(s)	187
BoxI	GACNNNNGTC	1 cut(s)	705
BpmI	CTGGAG	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	47
BsaBI	GATNNNNATC	2 cut(s)	413, 786
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	848
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 441, 889
Bse118I	RCCGGY	1 cut(s)	166
Bse1I	ACTGG	3 cut(s)	529, 651, 904
Bse3DI	GCAATG	1 cut(s)	813
Bse8I	GATNNNNATC	2 cut(s)	413, 786
BseBI	CCWGG	3 cut(s)	32, 320, 884
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	4 cut(s)	178, 211, 414, 892
BseJI	GATNNNNATC	2 cut(s)	413, 786
BseLI	CCNNNNNNNGG	3 cut(s)	221, 441, 889
BseMI	GCAATG	1 cut(s)	813
BseNI	ACTGG	3 cut(s)	529, 651, 904
BseRI	GAGGAG	4 cut(s)	83, 311, 543, 905
BseX3I	CGGCCG	2 cut(s)	117, 183
BseXI	GCAGC	3 cut(s)	175, 372, 790
Bsh1236I	CGCG	2 cut(s)	116, 131
Bsh1285I	CGRYCG	2 cut(s)	120, 186
BshFI	GGCC	4 cut(s)	119, 185, 815, 825
BsiEI	CGRYCG	2 cut(s)	120, 186
BsiHKAI	GWGCWC	1 cut(s)	899
BsiHKCI	CYCGRG	2 cut(s)	155, 629
BsiSI	CCGG	4 cut(s)	47, 167, 182, 849
BslFI	GGGAC	2 cut(s)	71, 237
BslI	CCNNNNNNNGG	3 cut(s)	221, 441, 889
BsmAI	GTCTC	3 cut(s)	32, 380, 746
BsmFI	GGGAC	2 cut(s)	71, 237
BsmI	GAATGC	1 cut(s)	620
BsnI	GGCC	4 cut(s)	119, 185, 815, 825
Bso31I	GGTCTC	1 cut(s)	380
BsoBI	CYCGRG	2 cut(s)	155, 629
Bsp1286I	GDGCHC	1 cut(s)	899
Bsp143I	GATC	1 cut(s)	342
BspACI	CCGC	7 cut(s)	116, 129, 131, 186, 204, 221, 485
BspANI	GGCC	4 cut(s)	119, 185, 815, 825
BspFNI	CGCG	2 cut(s)	116, 131
BspLI	GGNNCC	3 cut(s)	26, 209, 796
BspTNI	GGTCTC	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	813
BsrFI	RCCGGY	1 cut(s)	166
BsrI	ACTGG	3 cut(s)	529, 651, 904
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	342
Bst2UI	CCWGG	3 cut(s)	32, 320, 884
Bst4CI	ACNGT	1 cut(s)	799
Bst6I	CTCTTC	3 cut(s)	30, 644, 948
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstC8I	GCNNGC	4 cut(s)	168, 860, 940, 944
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	4 cut(s)	178, 211, 414, 892
BstFNI	CGCG	2 cut(s)	116, 131
BstHHI	GCGC	2 cut(s)	116, 178
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	3 cut(s)	32, 380, 746
BstMBI	GATC	1 cut(s)	342
BstMCI	CGRYCG	2 cut(s)	120, 186
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 182, 743, 812, 948
BstNI	CCWGG	3 cut(s)	32, 320, 884
BstNSI	RCATGY	1 cut(s)	750
BstPAI	GACNNNNGTC	1 cut(s)	705
BstSCI	CCNGG	4 cut(s)	30, 45, 318, 882
BstSFI	CTRYAG	1 cut(s)	933
BstUI	CGCG	2 cut(s)	116, 131
BstV1I	GCAGC	3 cut(s)	175, 372, 790
BstZI	CGGCCG	2 cut(s)	117, 183
BsuRI	GGCC	4 cut(s)	119, 185, 815, 825
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	131
BtsCI	GGATG	4 cut(s)	178, 211, 414, 892
BtsIMutI	CAGTG	3 cut(s)	644, 897, 909
Cac8I	GCNNGC	4 cut(s)	168, 860, 940, 944
CaiI	CAGNNNCTG	1 cut(s)	325
CfoI	GCGC	2 cut(s)	116, 178
Cfr10I	RCCGGY	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	24, 851
Cfr42I	CCGCGG	1 cut(s)	132
Csp6I	GTAC	2 cut(s)	511, 669
CviAII	CATG	4 cut(s)	747, 766, 778, 855
CviQI	GTAC	2 cut(s)	511, 669
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
EaeI	YGGCCR	2 cut(s)	117, 183
EagI	CGGCCG	2 cut(s)	117, 183
Eam1104I	CTCTTC	3 cut(s)	30, 644, 948
EarI	CTCTTC	3 cut(s)	30, 644, 948
EclXI	CGGCCG	2 cut(s)	117, 183
Eco147I	AGGCCT	1 cut(s)	825
Eco31I	GGTCTC	1 cut(s)	380
Eco47I	GGWCC	2 cut(s)	24, 851
Eco52I	CGGCCG	2 cut(s)	117, 183
Eco88I	CYCGRG	2 cut(s)	155, 629
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	3 cut(s)	30, 318, 882
FaeI	CATG	4 cut(s)	750, 769, 781, 858
FalI	AAGNNNNNCTT	2 cut(s)	829, 861
FaqI	GGGAC	2 cut(s)	71, 237
FatI	CATG	4 cut(s)	746, 765, 777, 854
FauI	CCCGC	3 cut(s)	197, 214, 478
FauNDI	CATATG	1 cut(s)	172
Fnu4HI	GCNGC	6 cut(s)	117, 129, 186, 189, 361, 804
FokI	GGATG	4 cut(s)	165, 198, 401, 899
Fsp4HI	GCNGC	6 cut(s)	117, 129, 186, 189, 361, 804
FspAI	RTGCGCAY	1 cut(s)	177
FspBI	CTAG	2 cut(s)	563, 605
FspI	TGCGCA	1 cut(s)	177
GlaI	GCGC	2 cut(s)	115, 177
GluI	GCNGC	6 cut(s)	117, 129, 186, 189, 361, 804
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	4 cut(s)	119, 185, 815, 825
HapII	CCGG	4 cut(s)	47, 167, 182, 849
HhaI	GCGC	2 cut(s)	116, 178
Hin1II	CATG	4 cut(s)	750, 769, 781, 858
Hin6I	GCGC	2 cut(s)	114, 176
HinP1I	GCGC	2 cut(s)	114, 176
HinfI	GANTC	5 cut(s)	137, 225, 315, 336, 727
HpaII	CCGG	4 cut(s)	47, 167, 182, 849
HphI	GGTGA	3 cut(s)	100, 424, 560
Hpy166II	GTNNAC	2 cut(s)	542, 671
Hpy188I	TCNGA	2 cut(s)	385, 597
Hpy188III	TCNNGA	5 cut(s)	10, 22, 82, 340, 629
Hpy8I	GTNNAC	2 cut(s)	542, 671
HpyAV	CCTTC	5 cut(s)	7, 191, 768, 805, 836
HpyCH4III	ACNGT	1 cut(s)	799
HpyCH4IV	ACGT	1 cut(s)	544
HpyCH4V	TGCA	2 cut(s)	746, 806
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 182, 743, 812, 948
HpySE526I	ACGT	1 cut(s)	544
Hsp92II	CATG	4 cut(s)	750, 769, 781, 858
HspAI	GCGC	2 cut(s)	114, 176
KroI	GCCGGC	1 cut(s)	166
KroNI	GCCGGC	1 cut(s)	168
KspI	CCGCGG	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	342
LmnI	GCTCC	5 cut(s)	96, 259, 322, 357, 845
Lsp1109I	GCAGC	3 cut(s)	175, 372, 790
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	2 cut(s)	563, 605
MaeII	ACGT	1 cut(s)	544
MaeIII	GTNAC	2 cut(s)	430, 907
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	5 cut(s)	47, 97, 345, 631, 965
MhlI	GDGCHC	1 cut(s)	899
MluCI	AATT	4 cut(s)	5, 463, 478, 498
MlyI	GAGTC	1 cut(s)	219
MroNI	GCCGGC	1 cut(s)	166
MroXI	GAANNNNTTC	2 cut(s)	17, 660
MseI	TTAA	1 cut(s)	272
MspA1I	CMGCKG	2 cut(s)	131, 188
MspI	CCGG	4 cut(s)	47, 167, 182, 849
MspR9I	CCNGG	4 cut(s)	32, 47, 320, 884
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	3 cut(s)	32, 320, 884
MvnI	CGCG	2 cut(s)	116, 131
MwoI	GCNNNNNNNGC	5 cut(s)	125, 182, 743, 812, 948
NaeI	GCCGGC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	1 cut(s)	342
NgoMIV	GCCGGC	1 cut(s)	166
NlaIII	CATG	4 cut(s)	750, 769, 781, 858
NlaIV	GGNNCC	3 cut(s)	26, 209, 796
NmuCI	GTSAC	2 cut(s)	430, 907
NsbI	TGCGCA	1 cut(s)	177
NspI	RCATGY	1 cut(s)	750
PaeR7I	CTCGAG	2 cut(s)	155, 629
PceI	AGGCCT	1 cut(s)	825
PctI	GAATGC	1 cut(s)	620
PdiI	GCCGGC	1 cut(s)	168
PdmI	GAANNNNTTC	2 cut(s)	17, 660
PfeI	GAWTC	4 cut(s)	137, 315, 336, 727
PflFI	GACNNNGTC	1 cut(s)	428
PfoI	TCCNGGA	2 cut(s)	45, 318
PkrI	GCNGC	6 cut(s)	118, 130, 187, 190, 362, 805
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PpuMI	RGGWCCY	1 cut(s)	24
PshAI	GACNNNNGTC	1 cut(s)	705
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	3 cut(s)	30, 318, 882
PspGI	CCWGG	3 cut(s)	30, 318, 882
PspN4I	GGNNCC	3 cut(s)	26, 209, 796
PspPI	GGNCC	2 cut(s)	24, 851
PspPPI	RGGWCCY	1 cut(s)	24
PspXI	VCTCGAGB	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	325
PsyI	GACNNNGTC	1 cut(s)	428
RsaI	GTAC	2 cut(s)	512, 670
RsaNI	GTAC	2 cut(s)	511, 669
SacII	CCGCGG	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	6 cut(s)	117, 129, 186, 189, 361, 804
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	2 cut(s)	24, 851
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	4 cut(s)	32, 47, 320, 884
SduI	GDGCHC	1 cut(s)	899
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	933
Sfr274I	CTCGAG	2 cut(s)	155, 629
Sfr303I	CCGCGG	1 cut(s)	132
SgrBI	CCGCGG	1 cut(s)	132
SinI	GGWCC	2 cut(s)	24, 851
SlaI	CTCGAG	2 cut(s)	155, 629
SmlI	CTYRAG	3 cut(s)	95, 155, 629
SmoI	CTYRAG	3 cut(s)	95, 155, 629
Sse9I	AATT	4 cut(s)	5, 463, 478, 498
SseBI	AGGCCT	1 cut(s)	825
SsiI	CCGC	7 cut(s)	116, 129, 131, 186, 204, 221, 485
SspI	AATATT	2 cut(s)	233, 742
SspMI	CTAG	2 cut(s)	563, 605
StuI	AGGCCT	1 cut(s)	825
StyD4I	CCNGG	4 cut(s)	30, 45, 318, 882
TaaI	ACNGT	1 cut(s)	799
TaiI	ACGT	1 cut(s)	547
TaqI	TCGA	4 cut(s)	156, 339, 630, 725
TaqII	GACCGA	1 cut(s)	404
TasI	AATT	4 cut(s)	5, 463, 478, 498
TauI	GCSGC	3 cut(s)	119, 131, 188
TfiI	GAWTC	4 cut(s)	137, 315, 336, 727
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	3 cut(s)	651, 904, 916
TseFI	GTSAC	2 cut(s)	430, 907
TseI	GCWGC	3 cut(s)	188, 360, 803
Tsp45I	GTSAC	2 cut(s)	430, 907
TspDTI	ATGAA	4 cut(s)	17, 210, 702, 824
TspGWI	ACGGA	2 cut(s)	407, 599
TspRI	CASTG	3 cut(s)	651, 904, 916
Tth111I	GACNNNGTC	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	24, 851
XapI	RAATTY	3 cut(s)	5, 478, 498
XceI	RCATGY	1 cut(s)	750
XhoI	CTCGAG	2 cut(s)	155, 629
XmnI	GAANNNNTTC	2 cut(s)	17, 660
XspI	CTAG	2 cut(s)	563, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.