Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007713

Physical Location & Seq

Genomic Coordinates Reverse (-)

3994132 .. 3996808

Gene Structure 2677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGCAGCTTCACTTCTCGCCTAGTATGAGAAGCATAACGATCTCGAGCAGCAATGGGTTTATTGACTTGATGAAGATCAAGGTCGGAGCTCGCCACATCTCTTATCGAACGGTTTTCCACACCATTCTAATCCTCGCTTTCTTATTGCCTTTCGTCTTCATTCTCACTGCTGTTGTTACTCTTGAAGGTGTCAACAAGTGCTCCTCATTTGACTGTTTAGGTAGGCGCTTGGGACCAAGGCTTCTGGGTAGGGTTGATGATTCAGCGAGACTGGTTAGAGACTTTTACAAGGTTCTAAACCAAGTGAACACTGAAGAAATCCCGGCTGGTCTAAAGCTTCCAGATTCATTTAATCAACTTGTTTCCGAAATGAAGAACAACCAGTATGATGCAAGGACCTTTGCTTTCATGTTAAGAGCAATGATGGAGAATTTTGAAAAGGAAGTCAGAGAGTCTAAGTTTTCAGAGTTGATGAACAAACACTATGCAGCAAGTTCTGTACCCAAAAGTATTCACTGTCTGTCTCTGCGTTTGACTGATGAATATTCATCCAATGCTCATGCACGCAAACAATTGCCTCCTCCAGAATTACTGCCATTGCTCTCTGACAACTCCTATCACCACTTTATTCTATCAACTGATAACATTCTGGCTGCTTCAGTTGTTGTTGCTTCTGCTGTCCAGTCATCTCTACAACCTGAAAAGATAGTCTTCCATGTCATTACTGACAAGAAAACCTACGCGGGTATGCACTCATGGTTTGCACTCAACCCTGTGTCCCCTGCTATTGTTGAAGTGAAAGGTGTGCACCAATTTGATTGGTTAACAAGAGAAAATGTTCCAGTCCTTGAAGCCGTAGAAAACCAATATGGAATCAGGAATTATTACCACGGGAATCATATTTCAGGGGCCAATCTTAGTGCTACAACTCCACGGACATTTGCATCAAAATTGCAGGCTAGAAGTCCAAAATACATATCCTTACTCAACCATCTCCGGATTTATATTCCTGAGCTATTTCCCAACCTTGATAAGGTGGTTTTCCTAGATGATGATGTTGTGATTCAACGAGATTTATCACCACTTTGGGAAATTGACCTTGGAGGAAAGGTCAACGGAGCTGTTGAAACTTGTAGAGGTGAAGATGAGTGGGTGATGTCCAAGCGATTCCGGAACTACTTCAATTTTTCCCATCCCCTCGTATCAAAGAATTTGGACCCTGAAGAATGTGCATGGGCTTATGGGATGAATATTGTTCGATCTCAATGCCTGGAGAAAAACAAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0047262 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090406 GO:0120025 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

430

Amino Acids

48.83

Weight (kDa)

8.39

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	173 - 425	7.1e-43	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01040 AT3G01040 AT3G01040 AT5G15470
fragaria_vesca	FvH4_6g47380 FvH4_6g47380 FvH4_6g47380 FvH4_6g47380
malus_domestica	MD00G1171900.v1.1 MD09G1061900.v1.1
prunus_persica	Prupe.3G258200_v2.0.a1
pyrus_communis	pycom111g05220 pycom17g05600
rosa_chinensis	RchiOBHm_Chr2g0166431
rosa_laevigata	RLG00000021618
rosa_multiflora	Rmu_sc0003016.1_g000006
rosa_roxburghii	Rroxscaffold_2G00084910
rosa_rugosa	Rorug02G0522800 Rorug02G0522900 Rorug02G0523000
rosa_samantha	Rh2BG601100 Rh2CG571700 Rh2DG611300
rosa_wichuraiana	Rw2G049080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	743
AccIII	TCCGGA	2 cut(s)	996, 1170
AciI	CCGC	1 cut(s)	743
AcsI	RAATTY	2 cut(s)	430, 1210
AcuI	CTGAAG	3 cut(s)	333, 642, 1242
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	1 cut(s)	1033
AgsI	TTSAA	7 cut(s)	185, 437, 794, 851, 1067, 1127, 1183
AjnI	CCWGG	1 cut(s)	1269
AjuI	GAANNNNNNNTTGG	2 cut(s)	1083, 1115
AluBI	AGCT	5 cut(s)	7, 89, 337, 1015, 1121
AluI	AGCT	5 cut(s)	7, 89, 337, 1015, 1121
Alw21I	GWGCWC	3 cut(s)	91, 203, 810
Alw26I	GTCTC	3 cut(s)	262, 273, 528
Alw44I	GTGCAC	1 cut(s)	806
Ama87I	CYCGRG	1 cut(s)	43
Aor13HI	TCCGGA	2 cut(s)	996, 1170
AoxI	GGCC	1 cut(s)	909
ApaLI	GTGCAC	1 cut(s)	806
ApeKI	GCWGC	4 cut(s)	4, 48, 488, 653
ApoI	RAATTY	2 cut(s)	430, 1210
Asp700I	GAANNNNTTC	2 cut(s)	837, 1178
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	4 cut(s)	233, 396, 909, 1216
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	4 cut(s)	611, 1071, 1151, 1165
AvaI	CYCGRG	1 cut(s)	43
AvaII	GGWCC	3 cut(s)	233, 396, 1216
BaeGI	GKGCMC	1 cut(s)	810
BanII	GRGCYC	1 cut(s)	91
BbsI	GAAGAC	2 cut(s)	148, 703
Bbv12I	GWGCWC	3 cut(s)	91, 203, 810
BbvI	GCAGC	4 cut(s)	16, 60, 500, 640
BccI	CCATC	3 cut(s)	418, 999, 1200
BceAI	ACGGC	1 cut(s)	839
BcgI	CGANNNNNNTGC	2 cut(s)	1248, 1282
BciT130I	CCWGG	1 cut(s)	1271
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	3 cut(s)	262, 273, 528
BfaI	CTAG	3 cut(s)	21, 960, 1046
BfoI	RGCGCY	1 cut(s)	229
BisI	GCNGC	4 cut(s)	5, 49, 489, 654
BlsI	GCNGC	4 cut(s)	6, 50, 490, 655
Bme1390I	CCNGG	2 cut(s)	323, 1271
Bme18I	GGWCC	3 cut(s)	233, 396, 1216
BmeT110I	CYCGRG	1 cut(s)	43
BmgT120I	GGNCC	4 cut(s)	233, 396, 909, 1216
BmiI	GGNNCC	3 cut(s)	234, 910, 1218
BmrFI	CCNGG	2 cut(s)	323, 1271
BmsI	GCATC	2 cut(s)	379, 953
BpiI	GAAGAC	2 cut(s)	148, 703
BpmI	CTGGAG	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	1011
BpuMI	CCSGG	1 cut(s)	323
BsaBI	GATNNNNATC	1 cut(s)	74
BsaJI	CCNNGG	4 cut(s)	236, 889, 932, 1099
BsaWI	WCCGGW	2 cut(s)	996, 1170
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 1095, 1125
Bsc4I	CCNNNNNNNGG	1 cut(s)	1033
Bse1I	ACTGG	4 cut(s)	276, 382, 682, 842
Bse3DI	GCAATG	3 cut(s)	58, 426, 596
Bse8I	GATNNNNATC	1 cut(s)	74
BseAI	TCCGGA	2 cut(s)	996, 1170
BseBI	CCWGG	1 cut(s)	1271
BseDI	CCNNGG	4 cut(s)	236, 889, 932, 1099
BseGI	GGATG	3 cut(s)	548, 1192, 1251
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	1033
BseMI	GCAATG	3 cut(s)	58, 426, 596
BseMII	CTCAG	1 cut(s)	1002
BseNI	ACTGG	4 cut(s)	276, 382, 682, 842
BseRI	GAGGAG	2 cut(s)	193, 570
BseSI	GKGCMC	1 cut(s)	810
BseXI	GCAGC	4 cut(s)	16, 60, 500, 640
Bsh1236I	CGCG	1 cut(s)	743
BshFI	GGCC	1 cut(s)	911
BsiHKAI	GWGCWC	3 cut(s)	91, 203, 810
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	3 cut(s)	323, 997, 1171
BslFI	GGGAC	2 cut(s)	246, 763
BslI	CCNNNNNNNGG	1 cut(s)	1033
BsmAI	GTCTC	3 cut(s)	262, 273, 528
BsmFI	GGGAC	2 cut(s)	246, 763
BsnI	GGCC	1 cut(s)	911
BsoBI	CYCGRG	1 cut(s)	43
Bsp1286I	GDGCHC	3 cut(s)	91, 203, 810
Bsp13I	TCCGGA	2 cut(s)	996, 1170
Bsp143I	GATC	3 cut(s)	39, 75, 1259
BspACI	CCGC	1 cut(s)	743
BspANI	GGCC	1 cut(s)	911
BspCNI	CTCAG	1 cut(s)	1003
BspEI	TCCGGA	2 cut(s)	996, 1170
BspFNI	CGCG	1 cut(s)	743
BspLI	GGNNCC	3 cut(s)	234, 910, 1218
BsrDI	GCAATG	3 cut(s)	58, 426, 596
BsrI	ACTGG	4 cut(s)	276, 382, 682, 842
BssECI	CCNNGG	4 cut(s)	236, 889, 932, 1099
BssMI	GATC	3 cut(s)	39, 75, 1259
BssT1I	CCWWGG	2 cut(s)	236, 1099
Bst2UI	CCWGG	1 cut(s)	1271
Bst4CI	ACNGT	3 cut(s)	112, 215, 518
BstC8I	GCNNGC	3 cut(s)	91, 565, 957
BstDEI	CTNAG	3 cut(s)	456, 917, 1011
BstDSI	CCRYGG	2 cut(s)	889, 932
BstENI	CCTNNNNNAGG	1 cut(s)	1031
BstF5I	GGATG	3 cut(s)	548, 1192, 1251
BstFNI	CGCG	1 cut(s)	743
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	3 cut(s)	42, 78, 1262
BstMAI	GTCTC	3 cut(s)	262, 273, 528
BstMBI	GATC	3 cut(s)	39, 75, 1259
BstNI	CCWGG	1 cut(s)	1271
BstSCI	CCNGG	2 cut(s)	321, 1269
BstSLI	GKGCMC	1 cut(s)	810
BstUI	CGCG	1 cut(s)	743
BstV1I	GCAGC	4 cut(s)	16, 60, 500, 640
BstV2I	GAAGAC	2 cut(s)	148, 703
BsuRI	GGCC	1 cut(s)	911
BtgI	CCRYGG	2 cut(s)	889, 932
BtsCI	GGATG	3 cut(s)	548, 1192, 1251
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	3 cut(s)	165, 309, 514
Cac8I	GCNNGC	3 cut(s)	91, 565, 957
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	4 cut(s)	233, 396, 909, 1216
Csp6I	GTAC	1 cut(s)	500
CviAII	CATG	5 cut(s)	409, 560, 716, 756, 1233
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	3 cut(s)	456, 917, 1011
DpnI	GATC	3 cut(s)	41, 77, 1261
DpnII	GATC	3 cut(s)	39, 75, 1259
Ecl136II	GAGCTC	1 cut(s)	89
Eco130I	CCWWGG	2 cut(s)	236, 1099
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	3 cut(s)	233, 396, 1216
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	3 cut(s)	333, 642, 1242
Eco88I	CYCGRG	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	89
EcoNI	CCTNNNNNAGG	1 cut(s)	1031
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	1269
EcoT14I	CCWWGG	2 cut(s)	236, 1099
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	2 cut(s)	236, 1099
FaeI	CATG	5 cut(s)	412, 563, 719, 759, 1236
FalI	AAGNNNNNCTT	2 cut(s)	695, 727
FaqI	GGGAC	2 cut(s)	246, 763
FatI	CATG	5 cut(s)	408, 559, 715, 755, 1232
FauI	CCCGC	1 cut(s)	736
Fnu4HI	GCNGC	4 cut(s)	5, 49, 489, 654
FokI	GGATG	3 cut(s)	535, 1179, 1258
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	4 cut(s)	5, 49, 489, 654
FspBI	CTAG	3 cut(s)	21, 960, 1046
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	4 cut(s)	5, 49, 489, 654
GsuI	CTGGAG	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	911
HapII	CCGG	3 cut(s)	323, 997, 1171
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	5 cut(s)	412, 563, 719, 759, 1236
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HincII	GTYRAC	3 cut(s)	193, 825, 1114
HindII	GTYRAC	3 cut(s)	193, 825, 1114
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	7 cut(s)	260, 344, 452, 873, 895, 1063, 1167
HpaI	GTTAAC	1 cut(s)	825
HpaII	CCGG	3 cut(s)	323, 997, 1171
HphI	GGTGA	4 cut(s)	611, 1071, 1151, 1165
Hpy166II	GTNNAC	5 cut(s)	193, 307, 808, 825, 1114
Hpy188I	TCNGA	5 cut(s)	86, 367, 449, 466, 607
Hpy188III	TCNNGA	8 cut(s)	43, 182, 341, 584, 877, 997, 1010, 1171
Hpy8I	GTNNAC	5 cut(s)	193, 307, 808, 825, 1114
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	3 cut(s)	112, 215, 518
HpyF3I	CTNAG	3 cut(s)	456, 917, 1011
Hsp92II	CATG	5 cut(s)	412, 563, 719, 759, 1236
HspAI	GCGC	1 cut(s)	226
Kpn2I	TCCGGA	2 cut(s)	996, 1170
KspAI	GTTAAC	1 cut(s)	825
Kzo9I	GATC	3 cut(s)	39, 75, 1259
LmnI	GCTCC	3 cut(s)	86, 206, 1118
Lsp1109I	GCAGC	4 cut(s)	16, 60, 500, 640
LweI	GCATC	2 cut(s)	379, 953
MaeI	CTAG	3 cut(s)	21, 960, 1046
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	3 cut(s)	41, 77, 1261
MboI	GATC	3 cut(s)	39, 75, 1259
MboII	GAAGA	7 cut(s)	85, 148, 326, 385, 703, 1154, 1235
MfeI	CAATTG	1 cut(s)	572
MhlI	GDGCHC	3 cut(s)	91, 203, 810
MluCI	AATT	9 cut(s)	430, 572, 587, 812, 880, 950, 1092, 1183, 1210
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	7 cut(s)	143, 214, 588, 591, 1097, 1130, 1208
MroI	TCCGGA	2 cut(s)	996, 1170
MroXI	GAANNNNTTC	2 cut(s)	837, 1178
MseI	TTAA	3 cut(s)	351, 413, 824
MspI	CCGG	3 cut(s)	323, 997, 1171
MspR9I	CCNGG	2 cut(s)	323, 1271
MunI	CAATTG	1 cut(s)	572
MvaI	CCWGG	1 cut(s)	1271
MvnI	CGCG	1 cut(s)	743
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	3 cut(s)	39, 75, 1259
NlaIII	CATG	5 cut(s)	412, 563, 719, 759, 1236
NlaIV	GGNNCC	3 cut(s)	234, 910, 1218
PaeR7I	CTCGAG	1 cut(s)	43
PdmI	GAANNNNTTC	2 cut(s)	837, 1178
PfeI	GAWTC	6 cut(s)	260, 344, 873, 895, 1063, 1167
PkrI	GCNGC	4 cut(s)	6, 50, 490, 655
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	1269
PspGI	CCWGG	1 cut(s)	1269
PspN4I	GGNNCC	3 cut(s)	234, 910, 1218
PspPI	GGNCC	4 cut(s)	233, 396, 909, 1216
PspPPI	RGGWCCY	1 cut(s)	396
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	91
SaqAI	TTAA	3 cut(s)	351, 413, 824
SatI	GCNGC	4 cut(s)	5, 49, 489, 654
Sau3AI	GATC	3 cut(s)	39, 75, 1259
Sau96I	GGNCC	4 cut(s)	233, 396, 909, 1216
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	323, 1271
SduI	GDGCHC	3 cut(s)	91, 203, 810
SfaNI	GCATC	2 cut(s)	379, 953
Sfr274I	CTCGAG	1 cut(s)	43
SinI	GGWCC	3 cut(s)	233, 396, 1216
SlaI	CTCGAG	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	9 cut(s)	430, 572, 587, 812, 880, 950, 1092, 1183, 1210
SsiI	CCGC	1 cut(s)	743
SspI	AATATT	3 cut(s)	545, 1252, 1286
SspMI	CTAG	3 cut(s)	21, 960, 1046
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	2 cut(s)	321, 1269
StyI	CCWWGG	2 cut(s)	236, 1099
TaaI	ACNGT	3 cut(s)	112, 215, 518
TaqI	TCGA	3 cut(s)	44, 106, 1258
TasI	AATT	9 cut(s)	430, 572, 587, 812, 880, 950, 1092, 1183, 1210
TfiI	GAWTC	6 cut(s)	260, 344, 873, 895, 1063, 1167
Tru1I	TTAA	3 cut(s)	351, 413, 824
Tru9I	TTAA	3 cut(s)	351, 413, 824
TscAI	CASTG	3 cut(s)	172, 316, 521
TseI	GCWGC	4 cut(s)	4, 48, 488, 653
TspDTI	ATGAA	9 cut(s)	86, 148, 336, 386, 397, 488, 537, 555, 1262
TspGWI	ACGGA	2 cut(s)	949, 1131
TspRI	CASTG	3 cut(s)	172, 316, 521
VneI	GTGCAC	1 cut(s)	806
VpaK11BI	GGWCC	3 cut(s)	233, 396, 1216
XagI	CCTNNNNNAGG	1 cut(s)	1031
XapI	RAATTY	2 cut(s)	430, 1210
XhoI	CTCGAG	1 cut(s)	43
XmnI	GAANNNNTTC	2 cut(s)	837, 1178
XspI	CTAG	3 cut(s)	21, 960, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.