Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0016958

Physical Location & Seq

Genomic Coordinates Forward (+)

4016849 .. 4018485

Gene Structure 1637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAGAAACTGCTTCCTCGACATGTTCAGATCATAGAGATGATTGATGAGGAGCTCATTCAGACCATAATTTCGGAGTATCACACAGCAGACTATGATTTATTAGATAAGAAACTTAAGGAGATGAGAATATTAGAAAATGTTGACTTGCCTGCCAAATTTGCGGATTTGATTGTTAAACCCAAAAAGAGTTCCATTACTGTTCCCAGTGAAGAAATTGAAGATTCAAAAGAGGAAGATGAGTCTGCTGACGAATCTGCTGATGAAGAAAACGTACCTGTGAAGAAACACGAAGAGGAAAAACAAAAAAAGGTTGTGGTGGAACCACCGAAGTTAGTACATAATCAGGACCTCCAAACCCAATGGAGGGAAGCAAAAAGGAACAACAAGTTGAAAGTTGTGTCGTTGATCAAAGAAAGAACGGGATATTCTGTCAACCCTGATGCAATGTTCGATATACAGGTGAAGCGTATTCATGAATACAAGCGACAACTGATGAACATTATGGGAATTGTTTACCGCTACAAGAAAATGAAAGAAATGAGTGCTTCGGAAAGGAAATCAAAGTTTGTTCCACGAGTTTGTATGTTTGGAGGAAAAGCATTTGCTACGTATGTGCAAGCCAAGAGAATCGTGAAATTTATCACAGATGTAGGGGCAACAGTGAATTGTGATCCCAGTATTGGTCGATCTACTGAAGGTTGTCTTCGTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009414 GO:0009415 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010035 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

239

Amino Acids

27.57

Weight (kDa)

7.66

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphorylase	PF00343	111 - 229	8.2e-39	Carbohydrate phosphorylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016958)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06180 pycom17g05650 pycom17g05660
rosa_chinensis	RchiOBHm_Chr1g0375781
rosa_multiflora	Rmu_co8392471.1_g000001 Rmu_sc0000247.1_g000034
rosa_roxburghii	Rroxscaffold_1G00031980
rosa_samantha	Rh2BG532800 Rh2BG532900 Rh2DG541700 Rh2DG541800 Rh3DG289000 Rh4BG206500
rosa_wichuraiana	Rw3G015630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	164, 520
AclWI	GGATC	1 cut(s)	668
AcsI	RAATTY	2 cut(s)	158, 638
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	2 cut(s)	276, 339
AfiI	CCNNNNNNNGG	3 cut(s)	366, 367, 683
AflII	CTTAAG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	22
AgsI	TTSAA	3 cut(s)	221, 228, 394
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw21I	GWGCWC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	668
ApoI	RAATTY	2 cut(s)	158, 638
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	57
BarI	GAAGNNNNNNTAC	2 cut(s)	258, 290
BauI	CACGAG	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	57
BclI	TGATCA	1 cut(s)	408
BfrI	CTTAAG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	324
BmrI	ACTGGG	2 cut(s)	201, 672
BmsI	GCATC	1 cut(s)	433
BmuI	ACTGGG	2 cut(s)	201, 672
BpiI	GAAGAC	1 cut(s)	698
BsaAI	YACGTR	1 cut(s)	612
Bsc4I	CCNNNNNNNGG	3 cut(s)	366, 367, 683
Bse1I	ACTGG	2 cut(s)	207, 678
Bse3DI	GCAATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	3 cut(s)	366, 367, 683
BseMI	GCAATG	1 cut(s)	453
BseNI	ACTGG	2 cut(s)	207, 678
BseRI	GAGGAG	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	696
BslI	CCNNNNNNNGG	3 cut(s)	366, 367, 683
BsmFI	GGGAC	1 cut(s)	696
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	4 cut(s)	30, 408, 673, 689
BspACI	CCGC	2 cut(s)	164, 520
BspHI	TCATGA	1 cut(s)	475
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	668
BspTI	CTTAAG	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	453
BsrI	ACTGG	2 cut(s)	207, 678
BssMI	GATC	4 cut(s)	30, 408, 673, 689
BssSI	CACGAG	1 cut(s)	576
Bst2BI	CACGAG	1 cut(s)	576
Bst4CI	ACNGT	2 cut(s)	202, 664
Bst6I	CTCTTC	1 cut(s)	288
BstAFI	CTTAAG	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	612
BstC8I	GCNNGC	2 cut(s)	153, 621
BstKTI	GATC	4 cut(s)	33, 411, 676, 692
BstMBI	GATC	4 cut(s)	30, 408, 673, 689
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	26
BstSNI	TACGTA	1 cut(s)	612
BstV2I	GAAGAC	1 cut(s)	698
BtsIMutI	CAGTG	2 cut(s)	214, 669
Cac8I	GCNNGC	2 cut(s)	153, 621
CciI	TCATGA	1 cut(s)	475
Cfr13I	GGNCC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	275, 338
CviAII	CATG	2 cut(s)	23, 476
CviJI	RGCY	2 cut(s)	55, 623
CviKI_1	RGCY	2 cut(s)	55, 623
CviQI	GTAC	2 cut(s)	275, 338
DpnI	GATC	4 cut(s)	32, 410, 675, 691
DpnII	GATC	4 cut(s)	30, 408, 673, 689
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Ecl136II	GAGCTC	1 cut(s)	55
Eco105I	TACGTA	1 cut(s)	612
Eco24I	GRGCYC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	717
EcoICRI	GAGCTC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	2 cut(s)	26, 479
FalI	AAGNNNNNCTT	1 cut(s)	690
FaqI	GGGAC	1 cut(s)	696
FatI	CATG	2 cut(s)	22, 475
FbaI	TGATCA	1 cut(s)	408
FriOI	GRGCYC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	26, 479
HincII	GTYRAC	2 cut(s)	145, 436
HindII	GTYRAC	2 cut(s)	145, 436
HinfI	GANTC	4 cut(s)	224, 242, 254, 630
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	3 cut(s)	145, 436, 517
Hpy188I	TCNGA	4 cut(s)	30, 63, 76, 553
Hpy188III	TCNNGA	3 cut(s)	347, 476, 634
Hpy8I	GTNNAC	3 cut(s)	145, 436, 517
HpyAV	CCTTC	1 cut(s)	692
HpyCH4III	ACNGT	2 cut(s)	202, 664
HpyCH4IV	ACGT	2 cut(s)	273, 611
HpyCH4V	TGCA	2 cut(s)	446, 619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpySE526I	ACGT	2 cut(s)	273, 611
Hsp92II	CATG	2 cut(s)	26, 479
Ksp22I	TGATCA	1 cut(s)	408
Kzo9I	GATC	4 cut(s)	30, 408, 673, 689
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	7 cut(s)	165, 220, 291, 332, 446, 453, 691
LweI	GCATC	1 cut(s)	433
MaeII	ACGT	2 cut(s)	273, 611
MalI	GATC	4 cut(s)	32, 410, 675, 691
MboI	GATC	4 cut(s)	30, 408, 673, 689
MboII	GAAGA	7 cut(s)	224, 233, 248, 278, 295, 305, 698
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	6 cut(s)	69, 158, 216, 510, 638, 667
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	7 cut(s)	27, 43, 226, 289, 360, 362, 587
MseI	TTAA	2 cut(s)	117, 177
MslI	CAYNNNNRTG	1 cut(s)	38
MspCI	CTTAAG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	4 cut(s)	30, 408, 673, 689
NlaIII	CATG	2 cut(s)	26, 479
NlaIV	GGNNCC	1 cut(s)	324
NspI	RCATGY	1 cut(s)	26
PagI	TCATGA	1 cut(s)	475
PciI	ACATGT	1 cut(s)	22
PfeI	GAWTC	3 cut(s)	224, 254, 630
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	612
PpuMI	RGGWCCY	1 cut(s)	349
PscI	ACATGT	1 cut(s)	22
Psp124BI	GAGCTC	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	349
PspPPI	RGGWCCY	1 cut(s)	349
RsaI	GTAC	2 cut(s)	276, 339
RsaNI	GTAC	2 cut(s)	275, 338
RseI	CAYNNNNRTG	1 cut(s)	38
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	117, 177
Sau3AI	GATC	4 cut(s)	30, 408, 673, 689
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	8 cut(s)	57, 276, 280, 315, 354, 465, 614, 703
SfaNI	GCATC	1 cut(s)	433
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SnaBI	TACGTA	1 cut(s)	612
Sse9I	AATT	6 cut(s)	69, 158, 216, 510, 638, 667
SsiI	CCGC	2 cut(s)	164, 520
SspI	AATATT	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	202, 664
TaiI	ACGT	2 cut(s)	276, 614
TaqI	TCGA	3 cut(s)	19, 453, 688
TasI	AATT	6 cut(s)	69, 158, 216, 510, 638, 667
TatI	WGTACW	1 cut(s)	337
TfiI	GAWTC	3 cut(s)	224, 254, 630
Tru1I	TTAA	2 cut(s)	117, 177
Tru9I	TTAA	2 cut(s)	117, 177
TscAI	CASTG	2 cut(s)	214, 669
TspDTI	ATGAA	5 cut(s)	279, 464, 492, 512, 548
TspRI	CASTG	2 cut(s)	214, 669
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	2 cut(s)	158, 638
XceI	RCATGY	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.