Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009442

Physical Location & Seq

Genomic Coordinates Reverse (-)

4625606 .. 4627824

Gene Structure 2219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCGGCCTCCATTGGCAACACCGAGATTAATTGGGACAAGCTTGATAAGACTAAATTTTATGTGGTTGGAGCTGGCTTGTTTACAGGGGTCACAGTGGCACTGTACCCAGTATCCGTGGTGAAAACCCGGCTACAAGTTGCTTCCAAAGATGCTCTAGAGGGAGATGCATTGTCTATGGCCAAAGGCATTTGGAAAGCAGATGGTATTCGTGGTTTATACCGAGGGTTTGGCACTGTGATCACCGGTGCAGTTCCTGCCCGGATTATATTTCTCACTGCTTTAGAGGCCACCAAGGTGGCTGCTTTCAAGATGGTTCAACCCTTGAACTTATCTGAGGCTGCAGAGGCAGCTTTGGCTAATGGAGTAGCTGGAATGACTGCCTCGCTTTTCTCTCAGGCTGTCTTTGTTCCCATTGACGTGATTAGTCAAAGATTGATGGTGCAAGGGTACTCGGGCCATGCAAAGTACACCGGGGGGATGGATGTTGCTCGTAAGGTTATAAAGTTGGATGGCATACGAGGACTTTATAGAGGGTTTGGACTTTCTATTATGACTTACTCTCCATCTAGCGCTGTATGGTGGGCTAGTTATGGTTCAAGCCAGCGCTTAATCTGGAGTTTCTTAGGCCGCGGAACTGGTTCTGATGAAGCTGTTCCGAGCGTGGGGAAAATAGTGTTGGTTCAAGCTGCTGGTGGAATTATTGCAGGTGCAACAGCATCCTGCATAACAACTCCATTGGATACCATCAAGACACGACTGCAGACAATGGGACACGATAAGAGACCCACTGCAAGAGAAGTTGTTAAGAACTTGATCAGAGAAGATGGCTGGCAAGGTTTCTACAGAGGGCTAGGTCCAAGATTTTTCAGTATGTCCGCCTGGGGCACCTCGATGATATTGGCTTATGAATATCTGAAGCGCTTGTGCGCAAAAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

315

Amino Acids

33.67

Weight (kDa)

9.67

Isoelectric Point (pI)

18.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	25 - 100	1e-14	Mitochondrial carrier protein
Mito_carr	PF00153	118 - 205	8.7e-20	Mitochondrial carrier protein
Mito_carr	PF00153	228 - 312	2.7e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15640 AT5G15640
fragaria_vesca	FvH4_6g46540 FvH4_6g46540 FvH4_6g46540 FvH4_6g46540
malus_domestica	MD09G1072700.v1.1 MD17G1063900.v1.1
prunus_persica	Prupe.3G250600_v2.0.a1
pyrus_communis	pycom12433g00040 pycom17g06420
rosa_chinensis	RchiOBHm_Chr2g0165181
rosa_laevigata	RLG00000021514
rosa_multiflora	Rmu_sc0001097.1_g000044
rosa_roxburghii	Rroxscaffold_2G00085960
rosa_rugosa	Rorug02G0513000
rosa_samantha	Rh2AG581200 Rh2BG592500 Rh2CG563200 Rh2DG602500
rosa_wichuraiana	Rw0G008420 Rw2G048270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	503
AarI	CACCTGC	1 cut(s)	698
Acc16I	TGCGCA	1 cut(s)	931
Acc36I	ACCTGC	1 cut(s)	698
AccB1I	GGYRCC	1 cut(s)	887
AccII	CGCG	1 cut(s)	633
AciI	CCGC	4 cut(s)	5, 631, 633, 879
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	938
AfaI	GTAC	3 cut(s)	107, 452, 470
AfeI	AGCGCT	3 cut(s)	574, 608, 923
AfiI	CCNNNNNNNGG	1 cut(s)	665
AgeI	ACCGGT	1 cut(s)	245
AgsI	TTSAA	5 cut(s)	310, 320, 328, 600, 686
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	881
AjuI	GAANNNNNNNTTGG	2 cut(s)	662, 694
AleI	CACNNNNGTG	1 cut(s)	296
AluBI	AGCT	6 cut(s)	43, 74, 353, 371, 653, 689
AluI	AGCT	6 cut(s)	43, 74, 353, 371, 653, 689
Alw26I	GTCTC	1 cut(s)	778
AlwNI	CAGNNNCTG	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	454
Aor51HI	AGCGCT	3 cut(s)	574, 608, 923
AoxI	GGCC	5 cut(s)	6, 180, 288, 457, 628
ApeKI	GCWGC	4 cut(s)	302, 341, 350, 689
ApoI	RAATTY	1 cut(s)	56
AseI	ATTAAT	1 cut(s)	30
AsiGI	ACCGGT	1 cut(s)	245
Asp700I	GAANNNNTTC	2 cut(s)	640, 654
AspLEI	GCGC	4 cut(s)	575, 609, 924, 932
AspS9I	GGNCC	2 cut(s)	457, 857
AsuC2I	CCSGG	3 cut(s)	130, 262, 475
AsuHPI	GGTGA	2 cut(s)	133, 235
AvaI	CYCGRG	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	857
BaeGI	GKGCMC	1 cut(s)	890
BalI	TGGCCA	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	887
BbvI	GCAGC	4 cut(s)	289, 328, 362, 676
BccI	CCATC	8 cut(s)	197, 307, 433, 475, 506, 574, 755, 821
BciT130I	CCWGG	1 cut(s)	883
BciVI	GTATCC	2 cut(s)	124, 736
BclI	TGATCA	2 cut(s)	240, 816
BcnI	CCSGG	3 cut(s)	130, 262, 475
BcoDI	GTCTC	1 cut(s)	778
BfaI	CTAG	4 cut(s)	158, 570, 588, 854
BfmI	CTRYAG	3 cut(s)	342, 761, 844
BfoI	RGCGCY	3 cut(s)	576, 610, 925
BfuAI	ACCTGC	1 cut(s)	698
BfuI	GTATCC	2 cut(s)	124, 736
BisI	GCNGC	6 cut(s)	6, 303, 342, 351, 631, 690
BlsI	GCNGC	6 cut(s)	7, 304, 343, 352, 632, 691
Bme1390I	CCNGG	4 cut(s)	130, 262, 475, 883
Bme18I	GGWCC	1 cut(s)	857
BmeT110I	CYCGRG	1 cut(s)	454
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	457, 857
BmiI	GGNNCC	1 cut(s)	889
BmrFI	CCNGG	4 cut(s)	130, 262, 475, 883
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	3 cut(s)	142, 157, 728
BmuI	ACTGGG	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	637
BpuMI	CCSGG	3 cut(s)	130, 262, 475
BsaI	GGTCTC	1 cut(s)	778
BsaJI	CCNNGG	6 cut(s)	117, 223, 294, 474, 631, 882
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	547, 577
Bsc4I	CCNNNNNNNGG	1 cut(s)	665
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	2 cut(s)	110, 643
BseBI	CCWGG	1 cut(s)	883
BseDI	CCNNGG	6 cut(s)	117, 223, 294, 474, 631, 882
BseGI	GGATG	4 cut(s)	486, 490, 517, 719
BseLI	CCNNNNNNNGG	1 cut(s)	665
BseMII	CTCAG	2 cut(s)	327, 410
BseNI	ACTGG	2 cut(s)	110, 643
BseSI	GKGCMC	1 cut(s)	890
BseXI	GCAGC	4 cut(s)	289, 328, 362, 676
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	5 cut(s)	8, 182, 290, 459, 630
BshNI	GGYRCC	1 cut(s)	887
BshTI	ACCGGT	1 cut(s)	245
BsiHKCI	CYCGRG	1 cut(s)	454
BsiSI	CCGG	4 cut(s)	130, 246, 262, 474
BslFI	GGGAC	2 cut(s)	50, 786
BslI	CCNNNNNNNGG	1 cut(s)	665
BsmAI	GTCTC	1 cut(s)	778
BsmFI	GGGAC	2 cut(s)	50, 786
BsnI	GGCC	5 cut(s)	8, 182, 290, 459, 630
Bso31I	GGTCTC	1 cut(s)	778
BsoBI	CYCGRG	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	890
Bsp143I	GATC	2 cut(s)	240, 816
BspACI	CCGC	4 cut(s)	5, 631, 633, 879
BspANI	GGCC	5 cut(s)	8, 182, 290, 459, 630
BspCNI	CTCAG	2 cut(s)	328, 409
BspFNI	CGCG	1 cut(s)	633
BspLI	GGNNCC	1 cut(s)	889
BspMAI	CTGCAG	2 cut(s)	346, 765
BspMI	ACCTGC	1 cut(s)	698
BspT107I	GGYRCC	1 cut(s)	887
BspTNI	GGTCTC	1 cut(s)	778
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	110, 643
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	6 cut(s)	117, 223, 294, 474, 631, 882
BssMI	GATC	2 cut(s)	240, 816
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	883
Bst4CI	ACNGT	3 cut(s)	97, 105, 238
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	3 cut(s)	76, 605, 833
BstDEI	CTNAG	3 cut(s)	336, 396, 625
BstDSI	CCRYGG	2 cut(s)	117, 631
BstF5I	GGATG	4 cut(s)	486, 490, 517, 719
BstFNI	CGCG	1 cut(s)	633
BstH2I	RGCGCY	3 cut(s)	576, 610, 925
BstHHI	GCGC	4 cut(s)	575, 609, 924, 932
BstKTI	GATC	2 cut(s)	243, 819
BstMAI	GTCTC	1 cut(s)	778
BstMBI	GATC	2 cut(s)	240, 816
BstMWI	GCNNNNNNNGC	5 cut(s)	257, 287, 347, 350, 356
BstNI	CCWGG	1 cut(s)	883
BstSCI	CCNGG	4 cut(s)	128, 260, 473, 881
BstSFI	CTRYAG	3 cut(s)	342, 761, 844
BstSLI	GKGCMC	1 cut(s)	890
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	4 cut(s)	289, 328, 362, 676
BstXI	CCANNNNNNTGG	1 cut(s)	298
BsuI	GTATCC	2 cut(s)	124, 736
BsuRI	GGCC	5 cut(s)	8, 182, 290, 459, 630
BtgI	CCRYGG	2 cut(s)	117, 631
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	4 cut(s)	486, 490, 517, 719
BtsI	GCAGTG	2 cut(s)	276, 789
BtsIMutI	CAGTG	5 cut(s)	101, 102, 234, 276, 789
BveI	ACCTGC	1 cut(s)	698
Cac8I	GCNNGC	3 cut(s)	76, 605, 833
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	4 cut(s)	575, 609, 924, 932
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	457, 857
Cfr42I	CCGCGG	1 cut(s)	634
Csp6I	GTAC	3 cut(s)	106, 451, 469
CspAI	ACCGGT	1 cut(s)	245
CviAII	CATG	1 cut(s)	461
CviQI	GTAC	3 cut(s)	106, 451, 469
DdeI	CTNAG	3 cut(s)	336, 396, 625
DpnI	GATC	2 cut(s)	242, 818
DpnII	GATC	2 cut(s)	240, 816
EaeI	YGGCCR	1 cut(s)	180
EciI	GGCGGA	1 cut(s)	868
Eco130I	CCWWGG	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	778
Eco47I	GGWCC	1 cut(s)	857
Eco47III	AGCGCT	3 cut(s)	574, 608, 923
Eco57I	CTGAAG	1 cut(s)	938
Eco88I	CYCGRG	1 cut(s)	454
EcoRII	CCWGG	1 cut(s)	881
EcoT14I	CCWWGG	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	464
FaqI	GGGAC	2 cut(s)	50, 786
FatI	CATG	1 cut(s)	460
FbaI	TGATCA	2 cut(s)	240, 816
Fnu4HI	GCNGC	6 cut(s)	6, 303, 342, 351, 631, 690
FokI	GGATG	4 cut(s)	493, 497, 524, 706
Fsp4HI	GCNGC	6 cut(s)	6, 303, 342, 351, 631, 690
FspBI	CTAG	4 cut(s)	158, 570, 588, 854
FspI	TGCGCA	1 cut(s)	931
GlaI	GCGC	4 cut(s)	574, 608, 923, 931
GluI	GCNGC	6 cut(s)	6, 303, 342, 351, 631, 690
GsuI	CTGGAG	1 cut(s)	637
HaeII	RGCGCY	3 cut(s)	576, 610, 925
HaeIII	GGCC	5 cut(s)	8, 182, 290, 459, 630
HapII	CCGG	4 cut(s)	130, 246, 262, 474
HhaI	GCGC	4 cut(s)	575, 609, 924, 932
Hin1II	CATG	1 cut(s)	464
Hin6I	GCGC	4 cut(s)	573, 607, 922, 930
HinP1I	GCGC	4 cut(s)	573, 607, 922, 930
HindIII	AAGCTT	1 cut(s)	41
HpaII	CCGG	4 cut(s)	130, 246, 262, 474
HphI	GGTGA	2 cut(s)	133, 235
Hpy166II	GTNNAC	2 cut(s)	84, 471
Hpy188I	TCNGA	5 cut(s)	337, 646, 660, 821, 918
Hpy188III	TCNNGA	4 cut(s)	158, 310, 616, 751
Hpy8I	GTNNAC	2 cut(s)	84, 471
HpyCH4III	ACNGT	3 cut(s)	97, 105, 238
HpyCH4IV	ACGT	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	5 cut(s)	257, 287, 347, 350, 356
HpyF3I	CTNAG	3 cut(s)	336, 396, 625
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	1 cut(s)	464
HspAI	GCGC	4 cut(s)	573, 607, 922, 930
Ksp22I	TGATCA	2 cut(s)	240, 816
KspI	CCGCGG	1 cut(s)	634
Kzo9I	GATC	2 cut(s)	240, 816
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	4 cut(s)	289, 328, 362, 676
LweI	GCATC	3 cut(s)	142, 157, 728
MaeI	CTAG	4 cut(s)	158, 570, 588, 854
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	2 cut(s)	242, 818
MboI	GATC	2 cut(s)	240, 816
MboII	GAAGA	1 cut(s)	836
MhlI	GDGCHC	1 cut(s)	890
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	3 cut(s)	31, 56, 699
MluNI	TGGCCA	1 cut(s)	182
MmeI	TCCRAC	2 cut(s)	49, 489
Mox20I	TGGCCA	1 cut(s)	182
Mph1103I	ATGCAT	1 cut(s)	172
MroXI	GAANNNNTTC	2 cut(s)	640, 654
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	3 cut(s)	30, 611, 807
MslI	CAYNNNNRTG	3 cut(s)	296, 419, 893
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	633
MspI	CCGG	4 cut(s)	130, 246, 262, 474
MspR9I	CCNGG	4 cut(s)	130, 262, 475, 883
MvaI	CCWGG	1 cut(s)	883
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	5 cut(s)	257, 287, 347, 350, 356
NciI	CCSGG	3 cut(s)	130, 262, 475
NdeII	GATC	2 cut(s)	240, 816
NlaIII	CATG	1 cut(s)	464
NlaIV	GGNNCC	1 cut(s)	889
NmuCI	GTSAC	1 cut(s)	91
NsbI	TGCGCA	1 cut(s)	931
NsiI	ATGCAT	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	296
PaqCI	CACCTGC	1 cut(s)	698
PdmI	GAANNNNTTC	2 cut(s)	640, 654
PinAI	ACCGGT	1 cut(s)	245
PkrI	GCNGC	6 cut(s)	7, 304, 343, 352, 632, 691
PshBI	ATTAAT	1 cut(s)	30
PsiI	TTATAA	1 cut(s)	503
Psp6I	CCWGG	1 cut(s)	881
PspGI	CCWGG	1 cut(s)	881
PspN4I	GGNNCC	1 cut(s)	889
PspPI	GGNCC	2 cut(s)	457, 857
PstI	CTGCAG	2 cut(s)	346, 765
PstNI	CAGNNNCTG	1 cut(s)	257
RsaI	GTAC	3 cut(s)	107, 452, 470
RsaNI	GTAC	3 cut(s)	106, 451, 469
RseI	CAYNNNNRTG	3 cut(s)	296, 419, 893
SacII	CCGCGG	1 cut(s)	634
SaqAI	TTAA	3 cut(s)	30, 611, 807
SatI	GCNGC	6 cut(s)	6, 303, 342, 351, 631, 690
Sau3AI	GATC	2 cut(s)	240, 816
Sau96I	GGNCC	2 cut(s)	457, 857
ScrFI	CCNGG	4 cut(s)	130, 262, 475, 883
SduI	GDGCHC	1 cut(s)	890
SfaNI	GCATC	3 cut(s)	142, 157, 728
SfcI	CTRYAG	3 cut(s)	342, 761, 844
Sfr303I	CCGCGG	1 cut(s)	634
SgrAI	CRCCGGYG	1 cut(s)	245
SgrBI	CCGCGG	1 cut(s)	634
SinI	GGWCC	1 cut(s)	857
SmiMI	CAYNNNNRTG	3 cut(s)	296, 419, 893
Sse9I	AATT	3 cut(s)	31, 56, 699
SsiI	CCGC	4 cut(s)	5, 631, 633, 879
SspMI	CTAG	4 cut(s)	158, 570, 588, 854
StyD4I	CCNGG	4 cut(s)	128, 260, 473, 881
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	3 cut(s)	97, 105, 238
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	893
TasI	AATT	3 cut(s)	31, 56, 699
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	2 cut(s)	8, 633
Tru1I	TTAA	3 cut(s)	30, 611, 807
Tru9I	TTAA	3 cut(s)	30, 611, 807
TscAI	CASTG	5 cut(s)	102, 108, 241, 283, 796
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	4 cut(s)	302, 341, 350, 689
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	663, 924
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	5 cut(s)	102, 108, 241, 283, 796
VpaK11BI	GGWCC	1 cut(s)	857
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	1 cut(s)	56
XbaI	TCTAGA	1 cut(s)	157
XmnI	GAANNNNTTC	2 cut(s)	640, 654
XspI	CTAG	4 cut(s)	158, 570, 588, 854
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.